 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RNH1,SPRYD3,OS9,ATP6V0D1,EVI5L,LRP10 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000272599 | ENST00000621900 | exon_skip_462673 | chr6:138926400-138926481 | -9.24 | -0.1249 | REPS1 | ENST00000450536 | In-frame | | ENSG00000272599 | ENST00000621900 | exon_skip_470077 | chr7:102397619-102397698 | -10.20 | -0.1925 | PRKRIP1 | ENST00000397912,ENST00000496391 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272599 | ENST00000621900 | exon_skip_11029 | chr1:154989559-154989707 | -18.65 | -0.1392 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_110809 | chr14:105449358-105449409 | -11.26 | -0.3312 | MTA1 | ENST00000331320 | In-frame | | ENSG00000272599 | ENST00000621900 | exon_skip_129375 | chr15:74838265-74838344 | -12.75 | -0.2406 | ULK3 | ENST00000440863 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_353131 | chr20:58669290-58669453 | -26.52 | -0.1842 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_374552 | chr3:50104247-50104308 | -8.76 | -0.1752 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_380242 | chr3:186784961-186785101 | -13.91 | -0.1054 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_382458 | chr3:38131595-38131638 | -7.43 | -0.2397 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_52891 | chr10:98429790-98429889 | -19.57 | -0.2836 | HPS1 | ENST00000325103,ENST00000361490 | In-frame | | ENSG00000272599 | ENST00000621900 | exon_skip_93979 | chr12:57107604-57107743 | -15.31 | -0.1245 | STAT6 | ENST00000300134,ENST00000454075,ENST00000543873,ENST00000556155 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_358821 | chr20:63943652-63943669 | -5.82 | -0.4850 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000272599 | ENST00000621900 | exon_skip_441064 | chr5:10235210-10235261 | -7.00 | -0.2593 | FAM173B | ENST00000511437 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272599.2 | ENST00000608444.1 | 165 | 204 | 701 | | ENSG00000272599.2 | ENST00000621900.1 | 54 | 138 | 302 |
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