 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CPSF2,NCOA2,SMAD1,DDX3X,AGFG1,BRF2,SF3A1,HBP1,CSDE1,PPARA,CREB1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000272556 | ENST00000609439 | exon_skip_430601 | chr4:82842139-82842481 | -35.92 | -0.1166 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272556 | ENST00000609439 | exon_skip_7523 | chr1:78660553-78660654 | -9.77 | -0.1018 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_382458 | chr3:38131595-38131638 | -8.94 | -0.2353 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_5818 | chr1:45568484-45568684 | -22.49 | -0.1785 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_309204 | chr19:49181348-49181461 | -19.59 | -0.1797 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_380242 | chr3:186784961-186785101 | -17.79 | -0.1470 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_387016 | chr3:121788283-121788432 | -13.61 | -0.1008 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_436035 | chr5:79656957-79657001 | -6.90 | -0.2029 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_446770 | chr5:178215275-178215430 | -18.33 | -0.1255 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_66482 | chr11:126274926-126275021 | -14.38 | -0.3196 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_133217 | chr16:8635038-8635079 | -11.84 | -0.3947 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_290158 | chr17:42953723-42953778 | -5.36 | -0.1411 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_300663 | chr19:1425877-1425960 | -11.94 | -0.2253 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_302168 | chr19:10680345-10680443 | -13.88 | -0.1525 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_319223 | chr19:43526200-43526349 | -18.20 | -0.1358 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_377198 | chr3:123130479-123130616 | -17.08 | -0.1294 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_442657 | chr5:74730259-74730398 | -16.92 | -0.1376 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000272556 | ENST00000609439 | exon_skip_445390 | chr5:150403120-150403312 | -22.68 | -0.1239 | CD74 | ENST00000009530 | In-frame | | ENSG00000272556 | ENST00000609439 | exon_skip_470226 | chr7:103307595-103307708 | -9.86 | -0.1038 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272556.1 | ENST00000609439.1 | 53 | 121 | 282 |
|
