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lncRNA: ENSG00000272512 |
Summary for RP11-54O7.17 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000272512 | Gene symbol | RP11-54O7.17 |
| Gene name | ||
| HGNC | ||
| Entrez ID | ||
| Gene type | lincRNA | |
| Synonyms | ||
| UniProtAcc |
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Structure and expression level for RP11-54O7.17 |
| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000272512 | 2.725554e+02 | 3.132150e+00 | 5.192422e-01 | 6.032155e+00 | 1.620000e-09 | 1.730000e-08 | UP | CHOL |
| ENSG00000272512 | 1.969760e+02 | 2.061800e+00 | 1.701827e-01 | 1.211521e+01 | 8.770000e-34 | 1.070000e-32 | UP | KIRC |
| ENSG00000272512 | 2.640312e+02 | 1.214857e+00 | 3.894509e-01 | 3.119409e+00 | 1.812142e-03 | 6.336907e-03 | UP | BLCA |
| ENSG00000272512 | 1.846732e+02 | 1.561878e+00 | 4.113467e-01 | 3.796987e+00 | 1.464660e-04 | 1.734153e-03 | UP | ESCA |
| ENSG00000272512 | 1.447970e+02 | 1.606095e+00 | 2.232086e-01 | 7.195489e+00 | 6.220000e-13 | 2.680000e-12 | UP | LUSC |
| ENSG00000272512 | 1.237540e+02 | 1.171360e+00 | 1.470233e-01 | 7.967168e+00 | 1.620000e-15 | 8.420000e-15 | UP | BRCA |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000272512 | 4.227937e-01 | 3.810768e-03 | CHOL | 5.160798e-03 |
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lncRNA-Protein interaction for RP11-54O7.17 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000272512 | ENST00000606034 | RP11-54O7.17 | ENSG00000141258 | SGSM2 | 24.63 | 91.958 | O43147 | TF | NA |
| ENSG00000272512 | ENST00000606034 | RP11-54O7.17 | ENSG00000102878 | HSF4 | 19.41 | 90.3616 | Q9ULV5 | TF | NA |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000272512 | ENST00000606034 | RP11-54O7.17 | ENSG00000071894 | CPSF1 | 25.08 | 91.0363 | Q10570 | RBP | NA |
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