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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000272462

Summary for U91328.19

check button Gene summary

Gene informationEnsembl ID

ENSG00000272462

Gene symbol

U91328.19

Gene name
HGNC
Entrez ID
Gene typelincRNA
Synonyms
UniProtAcc

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Structure and expression level for U91328.19

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002724623.823664e-019.538128e-03CHOL1.124825e-02
ENSG00000272462-5.101318e-013.280323e-07KICH1.061823e-06
ENSG00000272462-3.781149e-014.230416e-22KIRC4.532589e-21
ENSG00000272462-4.227793e-014.336949e-14KIRP1.261846e-12

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lncRNA-Protein interaction for U91328.19

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000272462ENST00000606723U91328.19ENSG00000104517UBR561.097.7209O95071RBP,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000116539ASH1L60.9297.7325Q9NR48TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000084676NCOA157.7296.5135Q15788TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000084093REST50.1497.7857Q13127TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000115966ATF212.3993.8163P15336TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000036549ZZZ358.196.0362Q8IYH5TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000140396NCOA246.5295.8183Q15596TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000171634BPTF45.1698.1623Q12830TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000140632GLYR129.3294.4723Q49A26TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000141644MBD125.0595.4695Q9UIS9TF,EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000272462ENST00000606723U91328.19ENSG00000125812GZF175.3797.2317Q9H116TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000174282ZBTB469.5296.5953Q9P1Z0TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000096401CDC5L68.5897.1488Q99459TF,RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000115816CEBPZ63.3193.451Q03701TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000116539ASH1L60.9297.7804Q9NR48TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000036549ZZZ358.196.0547Q8IYH5TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000100207TCF2057.8798.0787Q9UGU0TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000084676NCOA157.7296.5715Q15788TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000124782RREB154.1396.8738Q92766TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000117707PROX154.0893.9996Q92786TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000147124ZNF4151.4897.1064P51814TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000084093REST50.1497.8421Q13127TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000124459ZNF4547.0896.8207Q02386TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000140396NCOA246.5295.8343Q15596TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000171634BPTF45.1698.1534Q12830TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000165821SALL244.8795.3954Q9Y467TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000196670ZFP6242.4196.5169Q8NB50TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000180787ZFP340.494.8299Q96NJ6TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000070476ZXDC37.996.3999Q2QGD7TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000105856HBP136.894.2682O60381TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000198455ZXDB36.7694.3488P98169TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000143437ARNT35.0994.8162P27540TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000172845SP331.1792.5569Q02447TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000197857ZNF4430.9296.497P15621TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000172466ZNF2430.7592.3653P17028TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000168795ZBTB529.9996.7145O15062TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000140632GLYR129.3293.8474Q49A26TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000186272ZNF1729.396.7251P17021TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000119950MXI128.6591.5994P50539TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000185129PURA27.9292.2472Q00577TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000105708ZNF1427.0696.2147P17017TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000141644MBD125.0595.5329Q9UIS9TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000141646SMAD422.3790.7162Q13485TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000167182SP222.090.6361Q02086TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000163884KLF1521.6393.2765Q9UIH9TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000065029ZNF7620.2895.4893P36508TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000132846ZBED318.2292.2542Q96IU2TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000119138KLF918.0793.4206Q13886TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000095574IKZF518.0193.9189Q9H5V7TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000175395ZNF2515.2996.6683P17030TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000114126TFDP214.5696.3252Q14188TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000115966ATF212.3994.325P15336TF,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000275111ZNF211.7796.2876Q9BSG1TFNA
ENSG00000272462ENST00000606723U91328.19ENSG00000085274MYNN7.3395.9701Q9NPC7TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000272462ENST00000606723U91328.19ENSG00000096401CDC5L68.5897.1402Q99459TF,RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000137776SLTM65.0297.5477Q9NWH9RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000213079SCAF861.5497.6651Q9UPN6RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000056097ZFR61.196.8992Q96KR1RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000104517UBR561.097.7235O95071RBP,EpiNA
ENSG00000272462ENST00000606723U91328.19ENSG00000198231DDX4259.8896.4219Q86XP3RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000121057AKAP157.6696.2109Q92667RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000163510CWC2251.4394.6564Q9HCG8RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000173933RBM443.4493.9078Q9BWF3RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000129245FXR241.9496.5042P51116RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000164902PHAX38.9794.0389Q9H814RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000113742CPEB434.6795.1092Q17RY0RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000138757G3BP233.9395.8079Q9UN86RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000102081FMR125.4796.789Q06787RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000162613FUBP124.8795.6978Q96AE4RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000131013PPIL419.596.2568Q8WUA2RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000149532CPSF715.792.408Q8N684RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000155858LSM1114.6395.1422P83369RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000080802CNOT413.5791.9725O95628RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000072756TRNT112.2494.0414Q96Q11RBPNA
ENSG00000272462ENST00000606723U91328.19ENSG00000143486EIF2D11.1590.9658P41214RBPNA

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lncRNA-DNA interaction for U91328.19

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
CNOT4,CEBPZ,CWC22,DDX59,NCOA2,AQR,SP2,ZHX3,FMR1,ARNT,TRNT1,PURA,KLF9,ZZZ3,PHAX,ZNF14,G3BP2,ZNF41,KLF15,LSM11,ZBTB4,RBM41,ZBED3,THAP1,GLYR1,RBM4,PUM2,DZIP3,FXR2,SRBD1,SMAD4,ZFP62,ZNF44,CSDE1,SP3,ZNF17,ZNF2,PAIP1,KAT7,ZXDC,ZNF45,SUGP2,CELF1,DDX42,RXRB,VEZF1,GZF1,PPIL4,MBD1,RBM18,ZNF24,ASH1L,UNC50,ATF6B,CASC3,FUBP1,AKAP1,GABPA,IKZF5,DDX31,SF3A1,SP4,SALL2,MYNN,TFDP2,RBM43,ZFP3,CPSF7,KLF11,TCF20,ZBTB5,UBR5,ZFR,RNPC3,THAP6,TDRKH,NOP9,NR2C2,ZNF25,EIF2D,ATF2,SYNJ1
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
AGO1,UBR5,ZBTB4,RBM41,GTF2I,FXR2,ZFR,ZNF14,SYNJ1,SF3A1,FOXO4,ZNF45,FUBP1,REST,RBM43,MYNN,DDX46,CPSF7,PPIL4,EIF2D,ZFP3,SOX13,CASC3,CELF1,CDC5L,BPTF,RXRB,DDX1,AKAP1
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for U91328.19

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for U91328.19

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000272462ENSG00000141646SMAD4ENSG00000104517UBR55CHOL,KIRC,PCPG,SARC,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000174282ZBTB45CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000174282ZBTB45CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000171634BPTFENSG00000174282ZBTB45CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000263001GTF2I5CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000263001GTF2I5CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000171634BPTFENSG00000263001GTF2I5CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000036549ZZZ3ENSG00000056097ZFR5CHOL,KICH,KIRC,LIHC,THCA
ENSG00000272462ENSG00000070476ZXDCENSG00000056097ZFR5CHOL,KICH,KIRP,LIHC,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000056097ZFR6CHOL,KICH,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000096401CDC5LENSG00000056097ZFR5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000105708ZNF14ENSG00000056097ZFR5KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000114126TFDP2ENSG00000056097ZFR5KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000115816CEBPZENSG00000056097ZFR6CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000115966ATF2ENSG00000056097ZFR5CHOL,KICH,KIRC,LIHC,PCPG
ENSG00000272462ENSG00000116539ASH1LENSG00000056097ZFR7CHOL,KICH,KIRC,KIRP,LIHC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000056097ZFR6CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000140396NCOA2ENSG00000056097ZFR5CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000141646SMAD4ENSG00000056097ZFR5CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000147124ZNF41ENSG00000056097ZFR5CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000165821SALL2ENSG00000056097ZFR5CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000167182SP2ENSG00000056097ZFR5CHOL,KICH,KIRC,KIRP,LIHC
ENSG00000272462ENSG00000171634BPTFENSG00000056097ZFR6CHOL,KICH,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172466ZNF24ENSG00000056097ZFR5CHOL,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000056097ZFR5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000185129PURAENSG00000056097ZFR5CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000197857ZNF44ENSG00000056097ZFR5CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000275111ZNF2ENSG00000056097ZFR5CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000105708ZNF145KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000105708ZNF145KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000159082SYNJ15CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000115816CEBPZENSG00000159082SYNJ16CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000159082SYNJ16CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000159082SYNJ16CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000165821SALL2ENSG00000159082SYNJ15CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000171634BPTFENSG00000159082SYNJ15CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000172466ZNF24ENSG00000159082SYNJ15CHOL,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000174282ZBTB4ENSG00000159082SYNJ15CHOL,KICH,KIRC,LGG,PCPG
ENSG00000272462ENSG00000275111ZNF2ENSG00000159082SYNJ15CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000099995SF3A15CHOL,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000070476ZXDCENSG00000184481FOXO45CHOL,KICH,KIRP,LIHC,THCA
ENSG00000272462ENSG00000114126TFDP2ENSG00000184481FOXO45KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000184481FOXO46CHOL,KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000119950MXI1ENSG00000184481FOXO46CHOL,KICH,LIHC,PRAD,SARC,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000184481FOXO45CHOL,KICH,KIRC,KIRP,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000184481FOXO45CHOL,KIRC,LIHC,SARC,THCA
ENSG00000272462ENSG00000167182SP2ENSG00000184481FOXO45CHOL,KICH,KIRC,KIRP,LIHC
ENSG00000272462ENSG00000095574IKZF5ENSG00000124459ZNF455CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000105708ZNF14ENSG00000124459ZNF455KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000115816CEBPZENSG00000124459ZNF456CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000124459ZNF456CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000165821SALL2ENSG00000124459ZNF455CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000171634BPTFENSG00000124459ZNF455CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000172466ZNF24ENSG00000124459ZNF455CHOL,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000275111ZNF2ENSG00000124459ZNF455CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000036549ZZZ3ENSG00000145833DDX465CHOL,KICH,KIRC,LIHC,THCA
ENSG00000272462ENSG00000070476ZXDCENSG00000145833DDX465CHOL,KICH,KIRP,LIHC,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000145833DDX466CHOL,KICH,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000096401CDC5LENSG00000145833DDX465CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000105708ZNF14ENSG00000145833DDX465KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000114126TFDP2ENSG00000145833DDX465KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000115816CEBPZENSG00000145833DDX466CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000145833DDX467CHOL,KICH,KIRC,KIRP,LIHC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000145833DDX466CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000140396NCOA2ENSG00000145833DDX465CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000141646SMAD4ENSG00000145833DDX465CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000147124ZNF41ENSG00000145833DDX465CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000165821SALL2ENSG00000145833DDX465CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000171634BPTFENSG00000145833DDX466CHOL,KICH,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172466ZNF24ENSG00000145833DDX465CHOL,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000145833DDX465CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000185129PURAENSG00000145833DDX465CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000275111ZNF2ENSG00000145833DDX465CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000143842SOX135KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000108349CASC35CHOL,KICH,KIRC,LIHC,PCPG
ENSG00000272462ENSG00000096401CDC5LENSG00000108349CASC35CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000115816CEBPZENSG00000108349CASC35CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000108349CASC36CHOL,KICH,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000108349CASC35CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000141644MBD1ENSG00000108349CASC35CHOL,LIHC,PCPG,SARC,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000108349CASC36CHOL,KIRC,LIHC,PCPG,SARC,THCA
ENSG00000272462ENSG00000165821SALL2ENSG00000108349CASC35CHOL,KICH,KIRC,PCPG,SARC
ENSG00000272462ENSG00000171634BPTFENSG00000108349CASC36CHOL,KICH,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000108349CASC35CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000275111ZNF2ENSG00000108349CASC35CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000149187CELF15CHOL,KIRC,LIHC,SARC,THCA
ENSG00000272462ENSG00000116539ASH1LENSG00000096401CDC5L5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000096401CDC5L5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000036549ZZZ3ENSG00000171634BPTF5CHOL,KICH,KIRC,LIHC,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000171634BPTF5CHOL,KICH,KIRC,LIHC,PCPG
ENSG00000272462ENSG00000115816CEBPZENSG00000171634BPTF5CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000115966ATF2ENSG00000171634BPTF5CHOL,KICH,KIRC,LIHC,PCPG
ENSG00000272462ENSG00000116539ASH1LENSG00000171634BPTF6CHOL,KICH,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000171634BPTF5CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000171634BPTF5CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000171634BPTF5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000275111ZNF2ENSG00000171634BPTF5CHOL,KICH,KIRC,PCPG,THCA
ENSG00000272462ENSG00000171634BPTFENSG00000204231RXRB5CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000036549ZZZ3ENSG00000079785DDX15CHOL,KICH,KIRC,LIHC,THCA
ENSG00000272462ENSG00000095574IKZF5ENSG00000079785DDX15CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000096401CDC5LENSG00000079785DDX15CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000105708ZNF14ENSG00000079785DDX15KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000114126TFDP2ENSG00000079785DDX15KICH,KIRC,KIRP,LIHC,THCA
ENSG00000272462ENSG00000115816CEBPZENSG00000079785DDX16CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000115966ATF2ENSG00000079785DDX15CHOL,KICH,KIRC,LIHC,PCPG
ENSG00000272462ENSG00000116539ASH1LENSG00000079785DDX17CHOL,KICH,KIRC,KIRP,LIHC,PCPG,THCA
ENSG00000272462ENSG00000124459ZNF45ENSG00000079785DDX16CHOL,KICH,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000141646SMAD4ENSG00000079785DDX15CHOL,KIRC,LIHC,PCPG,THCA
ENSG00000272462ENSG00000165821SALL2ENSG00000079785DDX15CHOL,KICH,KIRC,KIRP,PCPG
ENSG00000272462ENSG00000167182SP2ENSG00000079785DDX15CHOL,KICH,KIRC,KIRP,LIHC
ENSG00000272462ENSG00000171634BPTFENSG00000079785DDX15CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000172466ZNF24ENSG00000079785DDX15CHOL,KIRC,KIRP,PCPG,THCA
ENSG00000272462ENSG00000172845SP3ENSG00000079785DDX15CHOL,KICH,LIHC,PCPG,THCA
ENSG00000272462ENSG00000185129PURAENSG00000079785DDX15CHOL,KIRC,KIRP,LIHC,PCPG
ENSG00000272462ENSG00000275111ZNF2ENSG00000079785DDX15CHOL,KICH,KIRC,PCPG,THCA

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000272462.2ENST00000606723.239188307