 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | AGAP6,EPOR,ZBTB8OS,GLI4,SLC25A27,SH2B1,C1orf159,MZF1,DMTF1,PIGL,KATNBL1,CSAD,KIAA0895L,ATAD3B,MUTYH,DCAF8,SLX4IP,CCNL2,CAPN10,CENATAC,ANKRD10,MSANTD2,THOC1,PAN3,CCDC14,INTS11,ZBED5,ZNF10,TAZ,SPG7,SIAH1,RBM26,TMEM86B,LCAT,RHPN1,ENDOV,IFT80,CHKB,FBXO44,POLI,CLK1,PRPF39,RABL2A,TRIM45,OFD1,MTRF1,NOL9,ANKS3,ARGLU1,C3orf62,PAXBP1,RGL3,ORMDL1,RSRP1,KLC1,HSPBAP1,YAE1,AGER,GPS2,CENPS,CLEC2D,SRSF2,C1orf52,CDK11A,TTC32,TIA1,GOLGA8B,CCDC191,NSUN6,DCUN1D2,ZNF18,PAN2,GOLGA8A,FAM229A,SETD4,NEIL1,HMGN3,TRMT13,FAM193B,DUSP28,CZIB,LUC7L,COA5,TTLL3,VCPKMT,SCNN1D,CCDC24,TRA2A,UBXN11,KHDC4,NR2C1,CROCC,APBB3,ERCC5,PNISR,CCDC57,TRAPPC2,TEPSIN | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,LUC7L,CCDC66,MZF1,C3orf62,TIA1,E4F1,KIAA0907,RGL3,SETD4,RBM6,PAN3,ACCS,MDM4,STX16 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272420 | ENST00000607858 | exon_skip_382458 | chr3:38131595-38131638 | -6.71 | -0.1917 | ACAA1 | ENST00000333167 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000272420 | ENSG00000132522 | GPS2 | CESC,KIRP,LGG,LUAD,THYM,UCS | KIRP | | | ENSG00000272420 | ENSG00000158062 | UBXN11 | CESC,KIRP,LGG,LUAD,OV,THYM | KIRP | | | ENSG00000272420 | ENSG00000158106 | RHPN1 | CESC,KIRP,LGG,THYM,UCS | KIRP | | | ENSG00000272420 | ENSG00000168096 | ANKS3 | CESC,KIRP,LGG,LUAD,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000175265 | GOLGA8A | CESC,KIRP,LUAD,OV,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000175455 | CCDC14 | CESC,KIRP,LUAD,OV,THYM,UCEC | KIRP | | | ENSG00000272420 | ENSG00000180089 | TMEM86B | CESC,KIRP,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000186166 | CENATAC | CESC,KIRP,LGG,LUAD,OV,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000196123 | KIAA0895L | CESC,KIRP,LUAD,THYM,UCS | KIRP | | | ENSG00000272420 | ENSG00000204149 | AGAP6 | CESC,KIRP,OV,THYM,UCEC | KIRP | | | ENSG00000272420 | ENSG00000204305 | AGER | CESC,KIRP,LGG,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000213398 | LCAT | CESC,KIRP,LUAD,OV,THYM,UCS | KIRP | | | ENSG00000272420 | ENSG00000221978 | CCNL2 | CESC,KIRP,LGG,LUAD,OV,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000069493 | CLEC2D | KIRP,LUAD,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000102125 | TAZ | KIRP,LGG,LUAD,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000162572 | SCNN1D | KIRP,LGG,LUAD,OV,THYM | KIRP | | | ENSG00000272420 | ENSG00000214021 | TTLL3 | KIRP,LUAD,OV,THYM,UCEC,UCS | KIRP | | | ENSG00000272420 | ENSG00000215252 | GOLGA8B | KIRP,LUAD,OV,THYM,UCEC | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272420.1 | ENST00000607858.1 | 111 | 158 | 490 |
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