 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF22,PLAG1,PHF1,RBM6,ZBED5,HMGN3,GLI4,MYPOP,THOC6,RBM5,CIRBP,TIGD5,MZF1,SGSM2,NRF1,RBM4B,DMTF1,CSTF3,RBM26,DDX51,TRA2A,CWC15,SRSF2,FIZ1,NR2C1,ZMAT1,ZNF83,NSUN6,ZNF34,SAFB2,THOC1,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ADAT1,DHX8,GTF2I | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272343 | ENST00000606048 | exon_skip_62623 | chr11:69079833-69079883 | -6.98 | -0.2792 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_361485 | chr21:29008239-29008307 | -8.45 | -0.1509 | RWDD2B | ENST00000493196 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_16568 | chr1:201989382-201989531 | -12.70 | -0.1067 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_53559 | chr10:101793912-101793998 | -6.56 | -0.1058 | OGA | ENST00000361464 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_66482 | chr11:126274926-126275021 | -9.92 | -0.1600 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_111863 | chr14:23565815-23565892 | -10.29 | -0.1391 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_300663 | chr19:1425877-1425960 | -8.18 | -0.1410 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_382458 | chr3:38131595-38131638 | -6.52 | -0.8150 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272343 | ENST00000606048 | exon_skip_141945 | chr16:11730644-11730774 | -10.70 | -0.1049 | TXNDC11 | ENST00000356957 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272343.1 | ENST00000606048.1 | 87 | 262 | 2 |
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