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lncRNA: ENSG00000272341

Summary for RP1-151F17.2

Gene summary

Gene information	Ensembl ID	ENSG00000272341
	Gene symbol	RP1-151F17.2
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for RP1-151F17.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272341	2.121243e+02	-1.956123e+00	2.620442e-01	-7.464860e+00	8.340000e-14	1.760000e-12	DOWN	CHOL
ENSG00000272341	4.339967e+02	2.293396e+00	4.231443e-01	5.419891e+00	5.960000e-08	2.900000e-06	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272341	-3.188814e-01	7.634511e-15	THCA	1.103534e-13

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lncRNA-Protein interaction for RP1-151F17.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000101126	ADNP	89.75	95.3287	Q9H2P0	TF,Epi	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000116731	PRDM2	78.05	92.6995	Q13029	TF,Epi	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000169057	MECP2	28.17	92.5759	P51608	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000168152	THAP9	121.9	91.888	Q9H5L6	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000135164	DMTF1	102.39	92.1594	Q9Y222	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000101126	ADNP	89.75	95.2226	Q9H2P0	TF,Epi	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000181827	RFX7	87.4	92.3498	Q2KHR2	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000124782	RREB1	84.18	93.6031	Q92766	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000116731	PRDM2	78.05	92.6433	Q13029	TF,Epi	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000189308	LIN54	73.34	90.3719	Q6MZP7	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000167232	ZNF91	61.56	94.7873	Q05481	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000159140	SON	61.33	96.0484	P18583	TF,RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000198521	ZNF43	60.13	94.2207	P17038	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000236287	ZBED5	51.0	91.029	Q49AG3	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000198040	ZNF84	44.75	95.456	P51523	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000166432	ZMAT1	31.42	90.5514	Q5H9K5	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000186272	ZNF17	30.98	94.1945	P17021	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000169057	MECP2	28.17	92.479	P51608	TF,Epi	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000118689	FOXO3	27.82	91.1107	O43524	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000204304	PBX2	23.2	93.1757	P40425	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000197857	ZNF44	19.06	91.5753	P15621	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000186130	ZBTB6	10.08	90.358	Q15916	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000105856	HBP1	7.89	93.135	O60381	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000068305	MEF2A	7.1	91.0944	Q02078	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000181472	ZBTB2	5.85	91.5977	Q8N680	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000095574	IKZF5	3.25	93.481	Q9H5V7	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000172466	ZNF24	3.23	91.406	P17028	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000162599	NFIA	1.27	91.6156	Q12857	TF	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000256223	ZNF10	-0.59	93.4926	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000163510	CWC22	104.27	93.2885	Q9HCG8	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000159082	SYNJ1	101.72	96.2123	O43426	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000134698	AGO4	98.91	92.7267	Q9HCK5	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000114127	XRN1	90.71	96.4927	Q8IZH2	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000213079	SCAF8	89.71	95.8587	Q9UPN6	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000068784	SRBD1	85.97	93.4112	Q8N5C6	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000106344	RBM28	80.05	95.353	Q9NW13	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000126070	AGO3	79.56	91.6832	Q9H9G7	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000136381	IREB2	78.06	91.3335	P48200	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000091009	RBM27	77.92	93.89	Q9P2N5	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000139746	RBM26	76.06	93.5889	Q5T8P6	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000125676	THOC2	65.36	96.0484	Q8NI27	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000159140	SON	61.33	96.0321	P18583	TF,RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000100201	DDX17	59.91	94.7638	Q92841	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000135870	RC3H1	57.33	95.3167	Q5TC82	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000123908	AGO2	56.08	92.2834	Q9UKV8	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000079134	THOC1	54.36	93.6682	Q96FV9	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000161813	LARP4	34.94	90.934	Q71RC2	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000102081	FMR1	27.63	94.4753	Q06787	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000131013	PPIL4	19.88	92.2036	Q8WUA2	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000172795	DCP2	12.82	93.4827	Q8IU60	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000080802	CNOT4	9.16	90.789	O95628	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000111364	DDX55	7.94	91.1055	Q8NHQ9	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000153250	RBMS1	1.75	90.512	P29558	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000100650	SRSF5	-0.93	91.4494	Q13243	RBP	NA
ENSG00000272341	ENST00000606924	RP1-151F17.2	ENSG00000173933	RBM4	-1.74	90.5299	Q9BWF3	RBP	NA

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lncRNA-DNA interaction for RP1-151F17.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

NCOA2,XRN1,KLF9,CPEB2,PBX2,RBM39,KLF12,JAZF1,MYSM1,AKAP8,KAT7,ZXDC,SUGP2,DMTF1,ELF1,RBM27,ZNF70,ZNF24,RORA,RBM28,GABPA,IKZF5,DDX55,TET3,ZBTB5,ZFP14,ZXDA,RNPC3,TRPS1,THOC1,ZNF25,FOXO1,LARP7,CNOT4,SON,CWC22,DDX59,ZBED5,ZZZ3,TTC14,RBM4,CREB1,RC3H1,SP100,ZNF44,EEA1,ZNF91,ZFP91,AGO2,RBM4B,RBMS3,RBM26,PURB,ADNP,GZF1,MYEF2,PPIL4,MBD1,IKZF4,ASH1L,CLOCK,NFIA,FUBP1,ZFP30,SP4,CPSF7,KLF11,LIN54,UBR5,THAP9,THOC2,DDX6,ZBTB6,THAP6,DDX17,ZBTB2,E2F5,SRRM2,RFX7,FOXN3,FMR1,LCOR,MECP2,PHF1,FOXJ3,KLF3,PURA,ZNF41,ZC3H8,TTF1,RBM41,SRBD1,CELF1,TMF1,RBM45,BACH1,PRDM2,AGO3,UNC50,DDX31,ZMAT1,ZNF83,QKI,ZFR,NSUN6,RFX3,ZFX,ZNF8,NAF1,NKRF,NR2C2,SYNJ1,PUS10,GPBP1,RBM6,ZNF14,RBM48,LSM11,ZFHX3,PUM2,XPO1,RBM5,CPEB3,ELF2,SMAD4,RBMS1,NFYB,ZNF43,ZFP28,MTF1,SP3,ZNF17,ZNF84,BAZ2B,RXRB,TRA2A,KMT2A,XPA,NR2C1,ZFP3,TET2,RBM33,NOL8,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

E2F5,ELF1,UBR5,MECP2,ZMAT1,MBNL1,ZNF14,TERF1,REST,DDX46,CPSF7,BACH1,RBM6,PPIL4,ZFHX3,CWC22,ZNF70,AGO4,RBMS3,NFIA,CELF1,FOXN3,RORA,FOXJ2,ZBTB6

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP1-151F17.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SLIRP,LSM7

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP1-151F17.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000133740	E2F5	7	COAD,ESCA,KIRC,KIRP,MESO,PAAD,THCA
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000133740	E2F5	5	COAD,ESCA,KIRP,PAAD,THCA
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000133740	E2F5	6	COAD,KIRC,KIRP,MESO,PAAD,THCA
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000133740	E2F5	5	KIRC,KIRP,MESO,PAAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000133740	E2F5	6	COAD,ESCA,KIRC,KIRP,PAAD,THCA
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000133740	E2F5	5	COAD,KIRC,KIRP,PAAD,THCA
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000120690	ELF1	5	COAD,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000120690	ELF1	5	COAD,LUAD,PAAD,READ,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000120690	ELF1	5	COAD,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000120690	ELF1	6	COAD,LUAD,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000120690	ELF1	5	COAD,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000104517	UBR5	5	COAD,KIRC,LUAD,THCA,THYM
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000169057	MECP2	6	COAD,KIRC,LUAD,MESO,PAAD,PRAD
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000169057	MECP2	6	COAD,KIRC,KIRP,LUAD,PAAD,PCPG
ENSG00000272341	ENSG00000116731	PRDM2	ENSG00000169057	MECP2	6	BRCA,COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000159140	SON	ENSG00000169057	MECP2	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000169057	MECP2	7	BRCA,KIRP,LUAD,MESO,PAAD,PRAD,THYM
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000169057	MECP2	7	COAD,KIRC,KIRP,LUAD,PAAD,PCPG,PRAD
ENSG00000272341	ENSG00000181827	RFX7	ENSG00000169057	MECP2	5	BRCA,COAD,KIRC,LUAD,PAAD
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000169057	MECP2	5	COAD,KIRC,PAAD,PCPG,THYM
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000169057	MECP2	6	COAD,KIRC,KIRP,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000197857	ZNF44	ENSG00000169057	MECP2	5	COAD,KIRP,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000169057	MECP2	7	BRCA,COAD,KIRC,LUAD,PAAD,PCPG,THYM
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000169057	MECP2	7	BRCA,KIRC,KIRP,LUAD,MESO,PRAD,THYM
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000166432	ZMAT1	5	KIRP,LUAD,PAAD,PCPG,THCA
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000166432	ZMAT1	9	BRCA,KIRC,KIRP,LUAD,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000166432	ZMAT1	8	BRCA,KIRC,KIRP,LUAD,PAAD,PCPG,PRAD,THCA
ENSG00000272341	ENSG00000169057	MECP2	ENSG00000166432	ZMAT1	6	BRCA,KIRP,LUAD,MESO,PAAD,PRAD
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000166432	ZMAT1	6	KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000166432	ZMAT1	9	BRCA,KIRC,KIRP,LUAD,PAAD,PCPG,PRAD,THCA,THYM
ENSG00000272341	ENSG00000198521	ZNF43	ENSG00000166432	ZMAT1	5	BRCA,KIRC,KIRP,LUAD,PAAD
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000166432	ZMAT1	7	BRCA,KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000166432	ZMAT1	7	BRCA,KIRC,KIRP,LUAD,PRAD,THCA,THYM
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000152601	MBNL1	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000152601	MBNL1	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000159140	SON	ENSG00000152601	MBNL1	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000152601	MBNL1	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000105708	ZNF14	7	ESCA,KIRC,LUAD,PAAD,PCPG,READ,THCA
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000105708	ZNF14	6	ESCA,KIRC,LUAD,PAAD,PCPG,THCA
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000105708	ZNF14	6	KIRC,LUAD,PAAD,PCPG,READ,THCA
ENSG00000272341	ENSG00000168152	THAP9	ENSG00000105708	ZNF14	5	ESCA,KIRC,LUAD,READ,THCA
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000105708	ZNF14	6	KIRC,LUAD,PAAD,PCPG,READ,THYM
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000105708	ZNF14	8	ESCA,KIRC,LUAD,PAAD,PCPG,READ,THCA,THYM
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000105708	ZNF14	6	ESCA,KIRC,LUAD,PAAD,READ,THCA
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000105708	ZNF14	5	ESCA,KIRC,LUAD,THCA,THYM
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000147601	TERF1	5	COAD,ESCA,READ,THCA,THYM
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000084093	REST	5	COAD,ESCA,KIRC,LUAD,READ
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000084093	REST	5	COAD,ESCA,KIRC,LUAD,READ
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000084093	REST	5	COAD,ESCA,LUAD,PRAD,READ
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000084093	REST	6	COAD,KICH,KIRC,LUAD,PRAD,READ
ENSG00000272341	ENSG00000168152	THAP9	ENSG00000084093	REST	5	COAD,ESCA,KIRC,LUAD,READ
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000084093	REST	5	COAD,ESCA,KIRC,LUAD,READ
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000084093	REST	7	COAD,ESCA,KICH,KIRC,LUAD,PRAD,READ
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000084093	REST	7	COAD,ESCA,KICH,KIRC,LUAD,PRAD,READ
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000145833	DDX46	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000145833	DDX46	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000145833	DDX46	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000145833	DDX46	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000149532	CPSF7	6	GBM,KIRC,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000149532	CPSF7	5	GBM,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000149532	CPSF7	5	GBM,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000149532	CPSF7	6	GBM,KIRC,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000197857	ZNF44	ENSG00000149532	CPSF7	5	GBM,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000149532	CPSF7	5	KIRC,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000149532	CPSF7	6	KIRC,KIRP,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000116731	PRDM2	ENSG00000004534	RBM6	5	BRCA,COAD,KIRC,LUAD,PAAD
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000004534	RBM6	9	BRCA,COAD,GBM,KIRC,KIRP,LUAD,LUSC,PAAD,READ
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000004534	RBM6	5	BRCA,KIRC,KIRP,LUAD,PAAD
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000004534	RBM6	6	COAD,GBM,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000004534	RBM6	6	COAD,GBM,KIRC,KIRP,LUAD,PAAD
ENSG00000272341	ENSG00000197857	ZNF44	ENSG00000004534	RBM6	6	COAD,GBM,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000004534	RBM6	8	BRCA,COAD,ESCA,KIRC,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000004534	RBM6	7	BRCA,COAD,KIRC,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000004534	RBM6	7	BRCA,ESCA,GBM,KIRC,KIRP,LUAD,LUSC
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000131013	PPIL4	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000131013	PPIL4	5	COAD,KIRC,PAAD,READ,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000131013	PPIL4	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000131013	PPIL4	5	COAD,KIRC,PAAD,READ,THYM
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000131013	PPIL4	5	COAD,KIRC,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000131013	PPIL4	5	COAD,ESCA,PRAD,THCA,THYM
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000131013	PPIL4	5	COAD,KIRC,PRAD,READ,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000140836	ZFHX3	5	COAD,KIRC,LUAD,READ,THYM
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000163510	CWC22	6	ESCA,KIRC,KIRP,PAAD,READ,THCA
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000163510	CWC22	6	ESCA,KIRC,KIRP,PAAD,READ,THCA
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000163510	CWC22	5	ESCA,KIRC,PAAD,READ,THYM
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000163510	CWC22	5	KIRC,KIRP,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000163510	CWC22	6	ESCA,KIRC,PRAD,READ,THCA,THYM
ENSG00000272341	ENSG00000204304	PBX2	ENSG00000163510	CWC22	5	ESCA,KIRP,PAAD,PRAD,THYM
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000163510	CWC22	7	ESCA,KIRC,KIRP,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000187792	ZNF70	6	ESCA,GBM,KIRC,KIRP,LUAD,PRAD
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000187792	ZNF70	5	KIRC,KIRP,LUAD,PRAD,THYM
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000187792	ZNF70	5	GBM,KIRC,KIRP,LUAD,PRAD
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000187792	ZNF70	6	ESCA,KIRC,KIRP,LUAD,PRAD,THYM
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000187792	ZNF70	6	ESCA,GBM,KIRP,LUAD,PRAD,THYM
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000134698	AGO4	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000134698	AGO4	7	COAD,ESCA,KIRC,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000134698	AGO4	6	COAD,KIRC,KIRP,LUAD,PAAD,READ
ENSG00000272341	ENSG00000116731	PRDM2	ENSG00000134698	AGO4	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000134698	AGO4	9	COAD,ESCA,KIRC,KIRP,LUAD,LUSC,PAAD,PRAD,READ
ENSG00000272341	ENSG00000159140	SON	ENSG00000134698	AGO4	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000134698	AGO4	5	KIRC,KIRP,LUAD,PRAD,THYM
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000134698	AGO4	6	COAD,KIRP,LUAD,PAAD,PRAD,READ
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000134698	AGO4	6	COAD,KIRC,LUAD,PAAD,READ,THYM
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000134698	AGO4	9	COAD,ESCA,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THYM
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000134698	AGO4	8	COAD,ESCA,KIRC,KIRP,LUAD,PAAD,PRAD,READ
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000149187	CELF1	6	COAD,KIRC,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000149187	CELF1	6	COAD,KIRC,KIRP,PAAD,READ,THCA
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000149187	CELF1	7	COAD,KIRC,KIRP,LUAD,PAAD,READ,THCA
ENSG00000272341	ENSG00000116731	PRDM2	ENSG00000149187	CELF1	5	COAD,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000149187	CELF1	9	COAD,GBM,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000149187	CELF1	7	COAD,GBM,KIRC,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000149187	CELF1	9	COAD,GBM,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000169057	MECP2	ENSG00000149187	CELF1	6	COAD,KIRC,KIRP,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000186130	ZBTB6	ENSG00000149187	CELF1	6	COAD,KIRC,LUAD,PAAD,READ,THYM
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000149187	CELF1	8	COAD,GBM,KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000197857	ZNF44	ENSG00000149187	CELF1	7	COAD,GBM,LUAD,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000149187	CELF1	9	COAD,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCA,THYM
ENSG00000272341	ENSG00000236287	ZBED5	ENSG00000149187	CELF1	8	COAD,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCA
ENSG00000272341	ENSG00000256223	ZNF10	ENSG00000149187	CELF1	6	GBM,KIRC,KIRP,LUAD,THCA,THYM
ENSG00000272341	ENSG00000068305	MEF2A	ENSG00000069667	RORA	5	KIRC,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000069667	RORA	6	KIRC,KIRP,LIHC,LUAD,PAAD,THCA
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000069667	RORA	5	KIRC,KIRP,LUAD,PAAD,THCA
ENSG00000272341	ENSG00000116731	PRDM2	ENSG00000069667	RORA	5	BRCA,KIRC,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000135164	DMTF1	ENSG00000069667	RORA	7	BRCA,KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000159140	SON	ENSG00000069667	RORA	5	KIRC,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000166432	ZMAT1	ENSG00000069667	RORA	8	BRCA,KIRC,KIRP,LUAD,PAAD,PRAD,THCA,THYM
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000069667	RORA	7	BRCA,KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000169057	MECP2	ENSG00000069667	RORA	6	BRCA,KIRC,KIRP,LUAD,PAAD,PRAD
ENSG00000272341	ENSG00000186272	ZNF17	ENSG00000069667	RORA	6	KIRC,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000069667	RORA	5	BRCA,KIRC,KIRP,LUAD,THCA
ENSG00000272341	ENSG00000198521	ZNF43	ENSG00000069667	RORA	5	BRCA,KIRC,KIRP,LUAD,PAAD
ENSG00000272341	ENSG00000095574	IKZF5	ENSG00000186130	ZBTB6	6	COAD,KIRC,LUAD,PAAD,PCPG,READ
ENSG00000272341	ENSG00000101126	ADNP	ENSG00000186130	ZBTB6	5	COAD,KIRC,LUAD,PAAD,PCPG
ENSG00000272341	ENSG00000167232	ZNF91	ENSG00000186130	ZBTB6	6	COAD,KIRC,LUAD,PAAD,PCPG,READ
ENSG00000272341	ENSG00000198040	ZNF84	ENSG00000186130	ZBTB6	7	COAD,KIRC,LUAD,PAAD,PCPG,READ,THYM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272341.1	ENST00000606924.1	95	99	386

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential