 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CPSF2,ATF1,SMAD1,ADAT1,TEP1,GLYR1,DDX3X,BAZ2A,ELF1,SF3A1,BACH1,HBP1,PPARA,DNMT1,FOXN3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272338 | ENST00000606064 | exon_skip_319223 | chr19:43526200-43526349 | -13.98 | -0.1165 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_29583 | chr1:114780109-114780215 | -11.34 | -0.1693 | SIKE1 | ENST00000060969 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_41813 | chr10:68337857-68337996 | -13.84 | -0.1236 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_290158 | chr17:42953723-42953778 | -7.30 | -0.1490 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_324294 | chr2:27774423-27774530 | -10.12 | -0.1124 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_353131 | chr20:58669290-58669453 | -18.00 | -0.1698 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_358821 | chr20:63943652-63943669 | -6.47 | -0.5392 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_382458 | chr3:38131595-38131638 | -6.48 | -0.1751 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_430434 | chr4:82356536-82356683 | -17.80 | -0.1228 | HNRNPD | ENST00000313899 | In-frame | | ENSG00000272338 | ENST00000606064 | exon_skip_442657 | chr5:74730259-74730398 | -11.51 | -0.1019 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_445390 | chr5:150403120-150403312 | -19.64 | -0.1220 | CD74 | ENST00000009530 | In-frame | | ENSG00000272338 | ENST00000606064 | exon_skip_470226 | chr7:103307595-103307708 | -13.35 | -0.2967 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000272338 | ENST00000606064 | exon_skip_95500 | chr12:96003837-96003920 | -10.11 | -0.1366 | LTA4H | ENST00000228740 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000272338 | hsa-mir-22 | ENST00000606064 | chr8:33361029-33361120 | 189.00 | -84.77 | 90 | NA | | ENSG00000272338 | hsa-mir-22 | ENST00000606064 | chr8:33360948-33361028 | 150.00 | -65.96 | 83 | NA | | ENSG00000272338 | hsa-mir-22 | ENST00000606064 | chr8:33361124-33361208 | 143.00 | -69.69 | 83 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272338.2 | ENST00000606064.2 | 56 | 323 | 493 |
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