 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | GRAMD1A,CORO1C,MTHFD1L,BAZ1A,TUBB6,MYH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000272323 | ENST00000606401 | exon_skip_430601 | chr4:82842139-82842481 | -31.20 | -0.1080 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame | | ENSG00000272323 | ENST00000606401 | exon_skip_302353 | chr19:11033766-11033865 | -15.17 | -0.2078 | SMARCA4 | ENST00000344626,ENST00000429416 | In-frame | | ENSG00000272323 | ENST00000606401 | exon_skip_322579 | chr19:55455635-55455845 | -27.55 | -0.1548 | ISOC2 | ENST00000425675 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272323 | ENST00000606401 | exon_skip_436498 | chr5:96729152-96729209 | -7.33 | -0.3490 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000272323 | ENST00000606401 | exon_skip_361434 | chr21:25997359-25997416 | -13.75 | -0.3618 | APP | ENST00000346798 | In-frame | | ENSG00000272323 | ENST00000606401 | exon_skip_376144 | chr3:100311832-100311877 | -8.16 | -0.3264 | TBC1D23 | ENST00000394144 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34837930-34838040 | 231.00 | -87.48 | 108 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838253-34838369 | 216.00 | -92.90 | 111 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838101-34838199 | 203.00 | -86.23 | 107 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838767-34838884 | 202.00 | -81.98 | 119 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34837612-34837728 | 190.00 | -94.62 | 111 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34837803-34837918 | 186.00 | -95.64 | 114 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838955-34839068 | 185.00 | -80.99 | 102 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838419-34838534 | 182.00 | -75.94 | 112 | NA | | ENSG00000272323 | hsa-mir-221 | ENST00000606401 | chr5:34838592-34838695 | 179.00 | -88.23 | 111 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34837882-34837962 | 180.00 | -63.16 | 79 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34838613-34838681 | 171.00 | -65.79 | 67 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34838189-34838259 | 155.00 | -58.05 | 73 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34838110-34838170 | 154.00 | -60.52 | 71 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34838307-34838378 | 149.00 | -67.55 | 66 | NA | | ENSG00000272323 | hsa-mir-146b | ENST00000606401 | chr5:34838977-34839058 | 144.00 | -53.87 | 77 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000272323 | TTC23L-AS1,hsa-mir-146b,C18orf32 | CHOL,THCA,ACC,GBM,PAAD | | ENSG00000272323 | TTC23L-AS1,hsa-mir-146b,GIN1 | CHOL,THCA,ACC,GBM,PAAD | | ENSG00000272323 | TTC23L-AS1,hsa-mir-221,SLC46A1 | KICH,THCA,UVM,ACC,GBM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272323.1 | ENST00000606401.1 | 124 | 33 | 404 |
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