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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000272288

Summary for ILRUN-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000272288

Gene symbol

ILRUN-AS1

Gene nameILRUN antisense RNA 1
HGNC

55216

Entrez ID

101929243

Gene typeantisense
SynonymsILRUN-AS1|RP11-140K17.3|06p21.31
UniProtAcc

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Structure and expression level for ILRUN-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002722881.563224e+021.110591e+003.721240e-012.984466e+002.840735e-039.358212e-03UPGBM

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000272288-3.442226e-012.173800e-03ACC9.843625e-03
ENSG000002722883.111175e-013.750276e-02CHOL3.865174e-02
ENSG00000272288-4.583393e-016.280233e-06KICH1.390623e-05

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lncRNA-Protein interaction for ILRUN-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for ILRUN-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ILRUN-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
IDH3A,STK10,FNIP1,AP5M1,ARID1A,MARCHF6,PTPRK,ATM,RDX,SBNO2,TAF4,DSE,KLHL18,QSER1,PPP1R12A,GNL3L,TRIM14,CAD,KIAA1109,CHD4,RASAL2,RNF213,KAT6B,EDEM1,TUBA1C,NEDD1,FCHO2,SMG1,CREBBP,PBRM1,TRAK1,SCRN1,ZSWIM8,PSMC1,SRP72,VPS13B,UBAP2,RAD21,PYGL,MAN1A2,GMPS,VPS13A,CELF2,YEATS2,PRRC2C,SNX19,PDPK1,PHF3,CEP120,PAK2,ZEB2,CPEB4,TMEM127,STRN,CALD1,SLFN5,DENND2B,JADE2,PTPRE,TTC3,PHF20,LRP10,KIDINS220,CYLD,CDC27,GTF2H3,RNF31,BTBD10,FBXO11,DDX6,GANAB,SEC23A,MINK1,MKLN1,WDR55,CSNK1E,ITSN2,SLTM,RNF38,MTMR12,RAB35,RB1CC1,KLF13,SMAD1,KIF21A,ABHD2,TM9SF1,AGFG1,MYCBP2,FBXL14,SYNPO,FBXW8,UBE4B,MED12,TP53BP2,NDST1,YAP1,SAMD8,GTF3C3,FOXN3,MSH6,PROSER3,OSBPL8,SLC9A1,LDLR,MICAL2,GALNT7,UBAP2L,BAHD1,DCP1A,ACTR2,MERTK,EEF2,RBM7,GPATCH8,ABL2,ICAM1,MED1,NUP58,TGOLN2,CNOT6L,HBP1,EIF4G2,PPFIBP1,CDC23,CLASP1,NIN,CUL2,NAA50,GON4L,CAB39,HUWE1,PRKAR1A,TEP1,ERAP1,BACH1,YME1L1,GOLM2,SH3PXD2B,FAM13B,ARFGEF1,ZMYM3,NOTCH2,DPP8,SUCO,ATF1,FNDC3B,ARHGAP32,ANKLE2,FYCO1,SPOPL,ABCC4,POLG,HMGCR,NOMO2,CASD1,LRP6,TMEM87B,FAM168B,BICD1,FAM53C,SINHCAF,SLC36A1,SLC30A6,ADCY7,VPS4B,SUSD6,MEGF8,UHRF1BP1L,PMM2,TRAPPC11,PFKM,KHNYN,MLXIP,MICAL3,DNM2,FOXJ3,MAPKBP1,DAB2IP,LARP1,EDC4,EHD2,NPEPPS,BMP2K,ACTN1,ITGB1,HECTD1,DCTN4,PPP6R1,PKN2,GPATCH2L,NDEL1,ARIH1,PARP8,PUM1,FNDC3A,MAN2A2,SEC24B,FOXN2,SFT2D2,KCTD10,KMT2D,CTNNB1,ZNF714,BCL2L13,AP3D1,MON2,TP53BP1,VPS37A,TUBGCP4,IGF1R,PPIP5K2,USP32,SNX30,G3BP1,DHX38,TFCP2,WBP11,FBXL18,DNMT1,POLR1A,PRMT5,TWF1,LUZP1,RCOR1,DDX3X,PUM3,IPO5,CRIM1,MAP3K20,NIPBL,ASXL2,PHF8,USP47,POLR2B,ESF1,FRYL,BAZ2A,CEP350,LMBR1,PIKFYVE,HIPK2,R3HDM1,HELZ2,ACVR1,MYOF,PRDM1,ASH1L,GNPTAB,C16orf70,MED13,KDSR,TMEM131,ARF3,EP400,DYRK2,GNE,ERO1A,XRN1,SIPA1L3,SMG6,VAV2,CEMIP2,ADNP2,KIAA0232,WDR20,NUP98,KIAA0586,DDX60,TAF6,ATP11A,ZCCHC14,PLBD2,TRIP12,PDCD6IP,GTF2A1,NPC1,CHD9,TFIP11,MPHOSPH8,MYO18A,SOS1,SMAD5,FLNB,SLC12A6,CSNK1A1,ZEB1,TUBGCP3,WAC,EHMT1,PHF20L1,EPRS1,ELF1,TNPO2,MIEF1,RPE,VRK2,TAF2,GCC2,CHD6,CAMKK2,DOCK10,TRIM33,ATP6V1C1,FEM1B,AMBRA1,THOC2,PAFAH1B1,HAUS2,TMX3,CCNK,NEMF,OAS3,CTDSP2,TCP11L1,RPS6KB1,MTPN,KRR1,NCOR1,EMC1,TAF5L,SCAF11,CNOT1,CAMSAP2,SLC35E1,TRAP1,MYH9,CHST11,HERC2,SERINC5,SH3PXD2A,PUS7,STX17,UBR1,SECISBP2L,ACTR3,PCDHGC3,NOP9,CHD8,TAOK3,RAB3GAP1,TSR1,MEF2D,MED14,SLC37A3,KIAA0100,XPC,BAZ2B,PRDM2,IARS1,ARHGAP21,CUL4A,UBE4A,MAP3K2,DNAJC14,PHACTR2,PCBP1,ATL2,ANKRD11,ITPRIPL2,IPO11,SMC4,ATF7,KATNAL1,FKTN,MACF1,LIMA1,RIC1,NUMB,PPRC1,SPRED2,DNAJC5,CUL4B,KTN1,FMNL2,AFDN,ILK,USP28,GPR107,FARP2,TTC17,IREB2,NEK9,LRCH4,ZDHHC17,SEPTIN11,CLIP1,SART3,CORO1C,RAD50,FAM219B,GARRE1,IQGAP2,RAI1,RC3H2,SNAP23,NFIC,GTF3C1,CCSER2,RNF169,AP2B1,MAPK1,UBR5,DOCK8,ACACA,TBC1D2B,RAI14,RAB11FIP1,MIER3,LARP4,BRCC3,USP9X,ROCK2,NUP62,UEVLD,KDM5C,MTMR1,CEP97,TNS1,TGFBRAP1,IQSEC1,WNK1,SSH1,SUN2,SOCS7,PFAS,KLHL5,RNF44,EPS15,MAP4K4,GOLGA2,ASAP1,PLEKHG2,ZYG11B,NID2,LRRK1,HYOU1,AP3M1,ANTXR2,KIF2A,EIF3L,RAB3D,EMSY,SOS2,THRAP3,CS,BACE1,POLK,IDS,ACTN4,ELK3,RTF1,DPY19L1,IL6ST,LARS1,AFF1,BLOC1S6,ABCE1,CARM1,OSMR,MRTFB,CBLL1,PICALM,AGO2,FAM114A2,UTP23,USP14,LAMB1,SETD2,INPP4A,ATP2B1,DHX36,ZNF91,FER,SRGAP2,CEP295,MARK2,RAB6A,NSMAF,TNS3,KPNB1,GSK3B,VPS26C,CEP170,GOLGA3,RNF4,NT5C2,YLPM1,ZMYND11,RALGAPB,HIPK1,LIMS1,QTRT2,PIK3CB,TACC1,NRBF2,PI4KA,NSD3,NUP50,CLOCK,MCM3AP,PLEKHB2,ZNF17,POLR2A,DLGAP4,SLC39A6,ANKFY1,BNIP2,NR2C2,DIP2A,CLTC,ATRN,GLG1,CREBRF,ARID4B,PARG,ATP2A2,SON,ZC3H13,M6PR,NACC2,PTPN12,APAF1,BBX,CDYL,TAF1,PCNX1,NFIX,UBR4,DMXL2,DDI2,ZNF720,SLF2,IQGAP1,TTBK2,SMPD4,SLMAP,KLF7,GSTCD,BPTF,MEX3D,PCNT,ARHGAP5,BCLAF1,CLCC1,SKIL,SFXN3,CSNK2A1,ZMIZ1,IKBKG,UBN1,NUP205,COPB2,STIM1,SAMD4A,SEC14L1,SETD5,IFI16,NIPA2,ESYT1,ARSB,NUP214,PWWP2A,PDLIM5,PCM1,KIF13B,SEPTIN8,VEZT,DYNC1LI2,KBTBD4,MIDEAS,ZNF106,RASA1,FMNL3,PTPN9,SLC9B2,SWAP70,KDM6A,PHC3,DDB1,SIK3,KMT2B,SERINC3,DOCK9,SYNJ1,SBF2,ATP9B,PDCL,ECPAS,ABCA1,ERC1,TNPO1,GTPBP1,ACLY,FAM160B1,RO60,MAPK9,CSNK1G3,PIK3C2A,HEATR5B,BIRC6,PPM1A,SEC31A,DENND5B,CYFIP1,TRAF3,MCTP2,ZNF28,MAP3K4,ATRX,PPFIA1,BCOR,BDP1,EVC,MADD,SEC24C,WWC2,AHNAK,PHRF1,NDUFS1,NSD1,NAB1,MPHOSPH9
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000272288ENST00000606971exon_skip_291984chr17:59119318-59119495-16.70-0.1518SKA2ENST00000330137In-frame
ENSG00000272288ENST00000606971exon_skip_5818chr1:45568484-45568684-26.00-0.1361AKR1A1ENST00000351829,ENST00000372070Frame-shift
ENSG00000272288ENST00000606496exon_skip_128281chr15:64081101-64081151-6.68-0.2474CIAO2AENST00000300030Frame-shift
ENSG00000272288ENST00000606971exon_skip_291980chr17:59119318-59119495-16.70-0.1518SKA2ENST00000330137In-frame
ENSG00000272288ENST00000606971exon_skip_90104chr12:10709907-10710114-28.84-0.1526YBX3ENST00000228251In-frame
ENSG00000272288ENST00000606496exon_skip_324294chr2:27774423-27774530-12.68-0.1268MRPL33ENST00000296102Frame-shift
ENSG00000272288ENST00000606496exon_skip_350485chr20:34073818-34073866-9.87-0.2100RALYENST00000246194In-frame
ENSG00000272288ENST00000606496exon_skip_95500chr12:96003837-96003920-11.67-0.1621LTA4HENST00000228740Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for ILRUN-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000272288ENST00000606971ANKRD11ENSG00000167522ENST00000378330-0.10411-GBM
ENSG00000272288ENST00000606971ANKRD11ENSG00000167522ENST00000301030-0.10411-GBM
ENSG00000272288ENST00000606971ANKRD11ENSG00000167522ENST00000330736-0.10521-GBM
ENSG00000272288ENST00000606971ANKRD11ENSG00000167522ENST00000563291-0.1988124-GBM
ENSG00000272288ENST00000606971KMT2DENSG00000167548ENST00000526209-0.162973-GBM
ENSG00000272288ENST00000606971TTC3ENSG00000182670ENST00000540756-3.2450298-GBM
ENSG00000272288ENST00000606971TTC3ENSG00000182670ENST00000428693-0.141555-GBM
ENSG00000272288ENST00000606971PI4KAENSG00000241973ENST00000399213-0.103241-GBM
ENSG00000272288ENST00000606496ANKRD11ENSG00000167522ENST00000330736-0.10291-GBM
ENSG00000272288ENST00000606496ANKRD11ENSG00000167522ENST00000613312-0.11901-GBM
ENSG00000272288ENST00000606496ANKRD11ENSG00000167522ENST00000563291-0.155063-GBM
ENSG00000272288ENST00000606496KMT2DENSG00000167548ENST00000526209-0.20841-GBM
ENSG00000272288ENST00000606496TTC3ENSG00000182670ENST00000540756-0.4508159-GBM
ENSG00000272288ENST00000606496TTC3ENSG00000182670ENST00000428693-0.153361-GBM
ENSG00000272288ENST00000606496MYCBP2ENSG00000005810ENST00000466564-0.121526-GBM
ENSG00000272288ENST00000606496PAFAH1B1ENSG00000007168ENST00000574468-0.10811-GBM
ENSG00000272288ENST00000606971PCNX1ENSG00000100731ENST00000439984-0.1400277-GBM
ENSG00000272288ENST00000606971PCNX1ENSG00000100731ENST00000555780-0.1396323-GBM
ENSG00000272288ENST00000606971ZC3H13ENSG00000123200ENST00000464597-0.1277216-GBM
ENSG00000272288ENST00000606496PCNX1ENSG00000100731ENST00000439984-0.17891-GBM
ENSG00000272288ENST00000606496PCNX1ENSG00000100731ENST00000555780-0.145140-GBM
ENSG00000272288ENST00000606496RAB3GAP1ENSG00000115839ENST00000264158-0.10701-GBM
ENSG00000272288ENST00000606496RAB3GAP1ENSG00000115839ENST00000442034-0.10701-GBM
ENSG00000272288ENST00000606496RAB3GAP1ENSG00000115839ENST00000539493-0.10881-GBM
ENSG00000272288ENST00000606971UBR4ENSG00000127481ENST00000375254-0.1287151-GBM
ENSG00000272288ENST00000606971UBR4ENSG00000127481ENST00000375225-0.1287155-GBM
ENSG00000272288ENST00000606971UBR4ENSG00000127481ENST00000375224-0.1074251-GBM
ENSG00000272288ENST00000606971MACF1ENSG00000127603ENST00000484793-0.131698-GBM
ENSG00000272288ENST00000606971LARP1ENSG00000155506ENST00000518892-0.1055139-GBM
ENSG00000272288ENST00000606971SIK3ENSG00000160584ENST00000454905-0.2724202-GBM
ENSG00000272288ENST00000606971SIK3ENSG00000160584ENST00000446921-0.4165307-GBM
ENSG00000272288ENST00000606496MACF1ENSG00000127603ENST00000484793-0.27741-GBM
ENSG00000272288ENST00000606496LARP1ENSG00000155506ENST00000336314-0.10321-GBM
ENSG00000272288ENST00000606496LARP1ENSG00000155506ENST00000518892-0.104328-GBM
ENSG00000272288ENST00000606496SIK3ENSG00000160584ENST00000454905-0.3403236-GBM
ENSG00000272288ENST00000606496SIK3ENSG00000160584ENST00000446921-0.2288283-GBM
ENSG00000272288ENST00000606971ATP2A2ENSG00000174437ENST00000553144-0.1730269-GBM
ENSG00000272288ENST00000606496LUZP1ENSG00000169641ENST00000314174-0.11251-GBM
ENSG00000272288ENST00000606496ATP2A2ENSG00000174437ENST00000548169-0.12221-GBM
ENSG00000272288ENST00000606496ATP2A2ENSG00000174437ENST00000553144-0.103714-GBM
ENSG00000272288ENST00000606971RASAL2ENSG00000075391ENST00000367649-0.1401253-GBM
ENSG00000272288ENST00000606971SH3PXD2AENSG00000107957ENST00000420222-0.4013126-GBM
ENSG00000272288ENST00000606496RASAL2ENSG00000075391ENST00000367649-0.17521-GBM
ENSG00000272288ENST00000606496SH3PXD2AENSG00000107957ENST00000420222-0.2907155-GBM
ENSG00000272288ENST00000606971R3HDM1ENSG00000048991ENST00000409606-0.2649349-GBM
ENSG00000272288ENST00000606971TP53BP1ENSG00000067369ENST00000263801-0.1037146-GBM
ENSG00000272288ENST00000606971TP53BP1ENSG00000067369ENST00000382039-0.1026151-GBM
ENSG00000272288ENST00000606971TP53BP1ENSG00000067369ENST00000450115-0.1026153-GBM
ENSG00000272288ENST00000606971TP53BP1ENSG00000067369ENST00000434561-0.167647-GBM
ENSG00000272288ENST00000606971TP53BP1ENSG00000067369ENST00000467474-0.14109-GBM
ENSG00000272288ENST00000606971GOLGA3ENSG00000090615ENST00000541013-0.140571-GBM
ENSG00000272288ENST00000606971GOLGA3ENSG00000090615ENST00000545875-0.18231-GBM
ENSG00000272288ENST00000606496R3HDM1ENSG00000048991ENST00000409606-0.193836-GBM
ENSG00000272288ENST00000606496TP53BP1ENSG00000067369ENST00000434561-0.27121-GBM
ENSG00000272288ENST00000606496TP53BP1ENSG00000067369ENST00000467474-0.1204107-GBM
ENSG00000272288ENST00000606496GOLGA3ENSG00000090615ENST00000204726-0.10571-GBM
ENSG00000272288ENST00000606496GOLGA3ENSG00000090615ENST00000450791-0.10571-GBM
ENSG00000272288ENST00000606496GOLGA3ENSG00000090615ENST00000545875-0.12701-GBM
ENSG00000272288ENST00000606971ROCK2ENSG00000134318ENST00000401753-0.1806458-GBM
ENSG00000272288ENST00000606971SLC12A6ENSG00000140199ENST00000558667-0.1126331-GBM
ENSG00000272288ENST00000606971FAM168BENSG00000152102ENST00000389915-0.1787349-GBM
ENSG00000272288ENST00000606971BACE1ENSG00000186318ENST00000510630-0.1508326-GBM
ENSG00000272288ENST00000606971BACE1ENSG00000186318ENST00000428381-0.6356255-GBM
ENSG00000272288ENST00000606971BACE1ENSG00000186318ENST00000513780-0.6356255-GBM
ENSG00000272288ENST00000606971BACE1ENSG00000186318ENST00000445823-0.6356255-GBM
ENSG00000272288ENST00000606971ITSN2ENSG00000198399ENST00000449392-0.1417358-GBM
ENSG00000272288ENST00000606496ROCK2ENSG00000134318ENST00000401753-0.1806105-GBM
ENSG00000272288ENST00000606496FAM168BENSG00000152102ENST00000409185-0.10091-GBM
ENSG00000272288ENST00000606496FAM168BENSG00000152102ENST00000389915-0.176819-GBM
ENSG00000272288ENST00000606496BACE1ENSG00000186318ENST00000510630-0.108645-GBM
ENSG00000272288ENST00000606496BACE1ENSG00000186318ENST00000428381-0.4407116-GBM
ENSG00000272288ENST00000606496BACE1ENSG00000186318ENST00000513780-0.4407116-GBM
ENSG00000272288ENST00000606496BACE1ENSG00000186318ENST00000445823-0.4407116-GBM
ENSG00000272288ENST00000606496ITSN2ENSG00000198399ENST00000449392-0.1008165-GBM
ENSG00000272288ENST00000606496SYNPOENSG00000171992ENST00000394243-0.10061-GBM
ENSG00000272288ENST00000606496SYNPOENSG00000171992ENST00000522122-0.10061-GBM
ENSG00000272288ENST00000606496SYNPOENSG00000171992ENST00000519664-0.10061-GBM
ENSG00000272288ENST00000606971PTPRKENSG00000152894ENST00000368207-0.126879-GBM
ENSG00000272288ENST00000606971HTTENSG00000197386ENST00000509618-0.1638541-GBM
ENSG00000272288ENST00000606496PTPRKENSG00000152894ENST00000368207-0.1584209-GBM
ENSG00000272288ENST00000606496HTTENSG00000197386ENST00000509618-0.1638188-GBM
ENSG00000272288ENST00000606496HECTD1ENSG00000092148ENST00000555915-0.10161-GBM
ENSG00000272288ENST00000606971HEATR5BENSG00000008869ENST00000425467-0.1299347-GBM
ENSG00000272288ENST00000606496HEATR5BENSG00000008869ENST00000425467-0.174828-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000508192-0.1654295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000361128-0.1221295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000350490-0.1221295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000502399-0.1373295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000509502-0.2378295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000513765-0.1221295-GBM
ENSG00000272288ENST00000606971MARK2ENSG00000072518ENST00000408948-0.6650393-GBM
ENSG00000272288ENST00000606971GTF3C1ENSG00000077235ENST00000561623-0.11011-GBM
ENSG00000272288ENST00000606971GTF3C1ENSG00000077235ENST00000356183-0.11011-GBM
ENSG00000272288ENST00000606971GTF3C1ENSG00000077235ENST00000569653-0.14861-GBM
ENSG00000272288ENST00000606971ATRXENSG00000085224ENST00000623316-0.10061-GBM
ENSG00000272288ENST00000606971ATRNENSG00000088812ENST00000446916-0.242458-GBM
ENSG00000272288ENST00000606496MARK2ENSG00000072518ENST00000508192-0.11611-GBM
ENSG00000272288ENST00000606496MARK2ENSG00000072518ENST00000509502-0.19491-GBM
ENSG00000272288ENST00000606496MARK2ENSG00000072518ENST00000408948-0.8386198-GBM
ENSG00000272288ENST00000606496GTF3C1ENSG00000077235ENST00000569653-0.13311-GBM
ENSG00000272288ENST00000606496ATRXENSG00000085224ENST00000400866-0.10741-GBM
ENSG00000272288ENST00000606496ATRNENSG00000088812ENST00000262919-0.11111-GBM
ENSG00000272288ENST00000606496ATRNENSG00000088812ENST00000446916-0.2592272-GBM
ENSG00000272288ENST00000606971MAPK1ENSG00000100030ENST00000398822-0.103753-GBM
ENSG00000272288ENST00000606971DNAJC5ENSG00000101152ENST00000360864-0.11471-GBM
ENSG00000272288ENST00000606496PPM1AENSG00000100614ENST00000325642-0.11901-GBM
ENSG00000272288ENST00000606971ARHGAP21ENSG00000107863ENST00000320481-0.3727389-GBM
ENSG00000272288ENST00000606971PRKAR1AENSG00000108946ENST00000358598-0.10051-GBM
ENSG00000272288ENST00000606971PRKAR1AENSG00000108946ENST00000536854-0.10051-GBM
ENSG00000272288ENST00000606971PRKAR1AENSG00000108946ENST00000586397-0.1251160-GBM
ENSG00000272288ENST00000606971PRKAR1AENSG00000108946ENST00000588188-0.1023291-GBM
ENSG00000272288ENST00000606971AMBRA1ENSG00000110497ENST00000526545-0.218779-GBM
ENSG00000272288ENST00000606496ARHGAP21ENSG00000107863ENST00000320481-0.3764168-GBM
ENSG00000272288ENST00000606496ARHGAP21ENSG00000107863ENST00000416305-0.10221-GBM
ENSG00000272288ENST00000606496AMBRA1ENSG00000110497ENST00000526545-0.6246247-GBM
ENSG00000272288ENST00000606971C16orf70ENSG00000125149ENST00000569277-0.1319210-GBM
ENSG00000272288ENST00000606971UBE4BENSG00000130939ENST00000488228-0.1030324-GBM
ENSG00000272288ENST00000606496C16orf70ENSG00000125149ENST00000569277-0.119016-GBM
ENSG00000272288ENST00000606496HERC2ENSG00000128731ENST00000261609-0.14891-GBM
ENSG00000272288ENST00000606496HERC2ENSG00000128731ENST00000564734-0.10571-GBM
ENSG00000272288ENST00000606496UBE4BENSG00000130939ENST00000488228-0.10321-GBM
ENSG00000272288ENST00000606971DMXL2ENSG00000104093ENST00000559059-0.3146174-GBM
ENSG00000272288ENST00000606971MEGF8ENSG00000105429ENST00000598762-0.776774-GBM
ENSG00000272288ENST00000606971MEGF8ENSG00000105429ENST00000593647-0.10621-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000589149-0.15159-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000592287-0.262334-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000588216-0.4960437-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000589572-0.10111-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000588491-0.10781-GBM
ENSG00000272288ENST00000606971TNPO2ENSG00000105576ENST00000587654-0.1317209-GBM
ENSG00000272288ENST00000606496DMXL2ENSG00000104093ENST00000559059-0.314637-GBM
ENSG00000272288ENST00000606496MEGF8ENSG00000105429ENST00000598762-0.774012-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000589149-0.136414-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000592287-0.20033-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000588216-0.496084-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000589572-0.11571-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000588491-0.11571-GBM
ENSG00000272288ENST00000606496TNPO2ENSG00000105576ENST00000587654-0.15111-GBM
ENSG00000272288ENST00000606971GCC2ENSG00000135968ENST00000614209-0.7843413-GBM
ENSG00000272288ENST00000606971ECPASENSG00000136813ENST00000374383-0.21061-GBM
ENSG00000272288ENST00000606971KIAA1109ENSG00000138688ENST00000419325-0.1336560-GBM
ENSG00000272288ENST00000606971KIAA1109ENSG00000138688ENST00000442707-0.263311-GBM
ENSG00000272288ENST00000606496GCC2ENSG00000135968ENST00000614209-0.784360-GBM
ENSG00000272288ENST00000606496GCC2ENSG00000135968ENST00000492785-0.10371-GBM
ENSG00000272288ENST00000606496MAPKBP1ENSG00000137802ENST00000512970-0.13721-GBM
ENSG00000272288ENST00000606496MAPKBP1ENSG00000137802ENST00000457542-0.11301-GBM
ENSG00000272288ENST00000606496MAPKBP1ENSG00000137802ENST00000505373-0.13721-GBM
ENSG00000272288ENST00000606496MAPKBP1ENSG00000137802ENST00000456763-0.11301-GBM
ENSG00000272288ENST00000606496KIAA1109ENSG00000138688ENST00000419325-0.1336207-GBM
ENSG00000272288ENST00000606496KIAA1109ENSG00000138688ENST00000442707-0.2069273-GBM
ENSG00000272288ENST00000606971PDPK1ENSG00000140992ENST00000441549-0.136760-GBM
ENSG00000272288ENST00000606971PDPK1ENSG00000140992ENST00000492021-0.13861-GBM
ENSG00000272288ENST00000606971PDPK1ENSG00000140992ENST00000389224-0.200852-GBM
ENSG00000272288ENST00000606971PDPK1ENSG00000140992ENST00000478708-0.1012107-GBM
ENSG00000272288ENST00000606971IQSEC1ENSG00000144711ENST00000613206-0.17531-GBM
ENSG00000272288ENST00000606971MARCHF6ENSG00000145495ENST00000502795-0.1493262-GBM
ENSG00000272288ENST00000606971TACC1ENSG00000147526ENST00000518415-0.1772326-GBM
ENSG00000272288ENST00000606971TACC1ENSG00000147526ENST00000521866-0.1263316-GBM
ENSG00000272288ENST00000606496PDPK1ENSG00000140992ENST00000441549-0.10391-GBM
ENSG00000272288ENST00000606496PDPK1ENSG00000140992ENST00000478708-0.108817-GBM
ENSG00000272288ENST00000606496IQSEC1ENSG00000144711ENST00000613206-0.17511-GBM
ENSG00000272288ENST00000606496MARCHF6ENSG00000145495ENST00000502795-0.16711-GBM
ENSG00000272288ENST00000606496TACC1ENSG00000147526ENST00000520340-0.119361-GBM
ENSG00000272288ENST00000606496TACC1ENSG00000147526ENST00000521866-0.117371-GBM
ENSG00000272288ENST00000606971SMG1ENSG00000157106ENST00000568038-0.1341139-GBM
ENSG00000272288ENST00000606496CRIM1ENSG00000150938ENST00000428774-0.12721-GBM
ENSG00000272288ENST00000606496FBXL18ENSG00000155034ENST00000382368-0.15011-GBM
ENSG00000272288ENST00000606496FBXL18ENSG00000155034ENST00000620087-0.11971-GBM
ENSG00000272288ENST00000606971PCNTENSG00000160299ENST00000418394-0.2132395-GBM
ENSG00000272288ENST00000606971NEMFENSG00000165525ENST00000556672-0.1089143-GBM
ENSG00000272288ENST00000606496PCNTENSG00000160299ENST00000418394-0.1542105-GBM
ENSG00000272288ENST00000606971NDEL1ENSG00000166579ENST00000580237-0.1300295-GBM
ENSG00000272288ENST00000606971NDEL1ENSG00000166579ENST00000585098-0.4357583-GBM
ENSG00000272288ENST00000606971DENND5BENSG00000170456ENST00000536562-0.24541-GBM
ENSG00000272288ENST00000606971DENND5BENSG00000170456ENST00000546299-0.4553158-GBM
ENSG00000272288ENST00000606971USP32ENSG00000170832ENST00000300896-0.1253242-GBM
ENSG00000272288ENST00000606971USP32ENSG00000170832ENST00000592339-0.1802225-GBM
ENSG00000272288ENST00000606971USP32ENSG00000170832ENST00000593071-0.1391220-GBM
ENSG00000272288ENST00000606971USP32ENSG00000170832ENST00000589552-0.10401-GBM
ENSG00000272288ENST00000606971USP32ENSG00000170832ENST00000590297-0.1303321-GBM
ENSG00000272288ENST00000606971KIAA0232ENSG00000170871ENST00000508423-0.17505-GBM
ENSG00000272288ENST00000606496NDEL1ENSG00000166579ENST00000585098-0.4357230-GBM
ENSG00000272288ENST00000606496USP32ENSG00000170832ENST00000300896-0.48881-GBM
ENSG00000272288ENST00000606496USP32ENSG00000170832ENST00000592339-0.48881-GBM
ENSG00000272288ENST00000606496USP32ENSG00000170832ENST00000593071-0.48881-GBM
ENSG00000272288ENST00000606496KIAA0232ENSG00000170871ENST00000508423-0.175012-GBM
ENSG00000272288ENST00000606971MRTFBENSG00000186260ENST00000574045-0.1750294-GBM
ENSG00000272288ENST00000606971MYO18AENSG00000196535ENST00000588791-0.1322225-GBM
ENSG00000272288ENST00000606971MAN2A2ENSG00000196547ENST00000559704-0.1040266-GBM
ENSG00000272288ENST00000606496MRTFBENSG00000186260ENST00000574045-0.17509-GBM
ENSG00000272288ENST00000606496MPHOSPH8ENSG00000196199ENST00000414242-0.1316274-GBM
ENSG00000272288ENST00000606971DDI2ENSG00000197312ENST00000483899-0.144293-GBM
ENSG00000272288ENST00000606971SOCS7ENSG00000274211ENST00000613678-0.1327324-GBM
ENSG00000272288ENST00000606971ACACAENSG00000278540ENST00000618053-0.1728253-GBM
ENSG00000272288ENST00000606496VPS13AENSG00000197969ENST00000467124-0.10211-GBM
ENSG00000272288ENST00000606496SOCS7ENSG00000274211ENST00000613678-0.12276-GBM
ENSG00000272288ENST00000606496ACACAENSG00000278540ENST00000618053-0.10151-GBM
ENSG00000272288ENST00000606971SFXN3ENSG00000107819ENST00000489434-0.1802355-GBM
ENSG00000272288ENST00000606971RAI1ENSG00000108557ENST00000583166-0.2153220-GBM
ENSG00000272288ENST00000606971MADDENSG00000110514ENST00000395344-0.1395195-GBM
ENSG00000272288ENST00000606971MADDENSG00000110514ENST00000405573-0.136969-GBM
ENSG00000272288ENST00000606971TTBK2ENSG00000128881ENST00000567840-0.1700548-GBM
ENSG00000272288ENST00000606971TTBK2ENSG00000128881ENST00000567274-0.2770187-GBM
ENSG00000272288ENST00000606971ARHGAP32ENSG00000134909ENST00000527272-0.373184-GBM
ENSG00000272288ENST00000606496SFXN3ENSG00000107819ENST00000489434-0.13732-GBM
ENSG00000272288ENST00000606496RAI1ENSG00000108557ENST00000353383-0.11671-GBM
ENSG00000272288ENST00000606496RAI1ENSG00000108557ENST00000583166-0.5033237-GBM
ENSG00000272288ENST00000606496MADDENSG00000110514ENST00000395344-0.10291-GBM
ENSG00000272288ENST00000606496TTBK2ENSG00000128881ENST00000567840-0.1700195-GBM
ENSG00000272288ENST00000606496TTBK2ENSG00000128881ENST00000567274-0.1700195-GBM
ENSG00000272288ENST00000606496ARHGAP32ENSG00000134909ENST00000527272-0.2916109-GBM
ENSG00000272288ENST00000606971BDP1ENSG00000145734ENST00000380675-0.1297153-GBM
ENSG00000272288ENST00000606971SNX30ENSG00000148158ENST00000416585-0.640049-GBM
ENSG00000272288ENST00000606496SNX30ENSG00000148158ENST00000416585-0.3827103-GBM

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000272288.4ENST00000606971.477943710
ENSG00000272288.4ENST00000606496.1190697125