 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | DIABLO,FAM168B,TNS3,NEK4,VPS26C,PSMD2,CEBPZ,UHRF1BP1L,MYH9,RNF123,NT5C2,BECN1,KHNYN,RNF40,PCDHGC3,GNL3L,EDC4,NPEPPS,PTPN11,KAT5,KIAA0100,EIF4G1,CREBBP,ATP6V0C,PSMC1,OS9,PUM1,SEC24B,CLTC,ANKRD11,GMPS,PARG,L2HGDH,SEC24A,ALG12,VGLL4,DHX8,NBR1,CTNNB1,THTPA,CCDC47,SLC35F5,EXOC7,PDPK1,ACBD5,AP3D1,APAF1,ILK,TMEM127,CDK4,STRN,TP53BP1,RPRD1B,UBR4,SURF4,FARP2,USP32,LRP10,KIDINS220,IQGAP1,DOCK7,TMCO3,RNF31,SLMAP,HGS,STAT3,FAM219B,FBXW11,GANAB,PRMT5,MKLN1,C9orf64,DDX3X,GFM1,IPO5,MPDZ,RNF38,ASXL2,PSME3,RNF169,G3BP2,IKBKG,TIMM23B,SMAD1,COPB2,ACACA,WIPF2,SEC14L1,TM9SF1,BAZ2A,RAB5C,LPCAT3,PRPS1,USP9X,ZFAND3,PDLIM5,DYNC1LI2,KBTBD4,APP,STT3A,TGFBRAP1,LIG3,MED13,PTPN9,OSBPL8,SMG6,SF3A1,NUP98,ABHD5,TAF6,SERINC3,TRIP12,GPATCH8,HYOU1,MRPL49,RHOT1,MED1,MYO18A,KIF2A,EIF3L,HBP1,CSNK1A1,BACE1,ATP1A1,PRKAR1A,ACTN4,CALU,SEC31A,CTNNA1,ELF1,TBC1D9B,CARM1,USP8,BCOR,AKAP9,TECPR2,ITFG1,RUSF1,USP10,PEX10,ATF1,DOCK1,CCNK,GLYR1,MCFD2,TRAF7,NDUFS1,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272155 | ENST00000606067 | exon_skip_382458 | chr3:38131595-38131638 | -6.29 | -1.2580 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272155 | ENST00000606067 | exon_skip_53559 | chr10:101793912-101793998 | -10.55 | -0.1271 | OGA | ENST00000361464 | Frame-shift | | ENSG00000272155 | ENST00000606067 | exon_skip_353131 | chr20:58669290-58669453 | -22.55 | -0.1708 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000272155 | ENST00000606067 | exon_skip_387016 | chr3:121788283-121788432 | -9.88 | -0.1051 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000272155 | ENST00000606067 | exon_skip_441368 | chr5:32380074-32380172 | -13.53 | -0.1503 | ZFR | ENST00000265069 | Frame-shift | | ENSG00000272155 | ENST00000606067 | exon_skip_445390 | chr5:150403120-150403312 | -17.76 | -0.1432 | CD74 | ENST00000009530 | In-frame | | ENSG00000272155 | ENST00000606067 | exon_skip_470226 | chr7:103307595-103307708 | -10.13 | -0.1369 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000272155 | ENST00000606067 | NT5C2 | ENSG00000076685 | ENST00000458345 | -0.1075 | 41 | - | HNSC | | ENSG00000272155 | ENST00000606067 | NT5C2 | ENSG00000076685 | ENST00000470299 | -0.4655 | 226 | - | HNSC | | ENSG00000272155 | ENST00000606067 | TNS3 | ENSG00000136205 | ENST00000442536 | -0.5431 | 302 | - | KIRP | | ENSG00000272155 | ENST00000606067 | TNS3 | ENSG00000136205 | ENST00000458317 | -0.5431 | 312 | - | KIRP | | ENSG00000272155 | ENST00000606067 | PDLIM5 | ENSG00000163110 | ENST00000506632 | -0.1465 | 256 | - | CHOL,BLCA,HNSC,UCEC | | ENSG00000272155 | ENST00000606067 | ATP1A1 | ENSG00000163399 | ENST00000440951 | -0.1127 | 290 | - | KIRP | | ENSG00000272155 | ENST00000606067 | ACBD5 | ENSG00000107897 | ENST00000375888 | -0.1043 | 340 | - | CHOL | | ENSG00000272155 | ENST00000606067 | MYO18A | ENSG00000196535 | ENST00000588791 | -0.1179 | 197 | - | HNSC | | ENSG00000272155 | ENST00000606067 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.7238 | 406 | - | CHOL,HNSC | | ENSG00000272155 | ENST00000606067 | NDUFS1 | ENSG00000023228 | ENST00000449699 | -0.2532 | 374 | - | CHOL,HNSC | | ENSG00000272155 | ENST00000606067 | NDUFS1 | ENSG00000023228 | ENST00000432169 | -0.2532 | 374 | - | CHOL,HNSC | | ENSG00000272155 | ENST00000606067 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.3550 | 350 | - | CHOL,KIRP | | ENSG00000272155 | ENST00000606067 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.1365 | 212 | - | CHOL,KIRP | | ENSG00000272155 | ENST00000606067 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1050 | 252 | - | CHOL,KIRP | | ENSG00000272155 | ENST00000606067 | MPDZ | ENSG00000107186 | ENST00000536827 | -0.1406 | 318 | - | CHOL,BLCA,UCEC | | ENSG00000272155 | ENST00000606067 | MPDZ | ENSG00000107186 | ENST00000447879 | -0.1406 | 319 | - | CHOL,BLCA,UCEC | | ENSG00000272155 | ENST00000606067 | MPDZ | ENSG00000107186 | ENST00000546205 | -0.2405 | 298 | - | CHOL,BLCA,UCEC | | ENSG00000272155 | ENST00000606067 | UHRF1BP1L | ENSG00000111647 | ENST00000548712 | -0.1039 | 294 | - | CHOL | | ENSG00000272155 | ENST00000606067 | UHRF1BP1L | ENSG00000111647 | ENST00000547428 | -0.1115 | 293 | - | CHOL | | ENSG00000272155 | ENST00000606067 | LPCAT3 | ENSG00000111684 | ENST00000538910 | -0.1022 | 276 | - | CHOL | | ENSG00000272155 | ENST00000606067 | SEC24A | ENSG00000113615 | ENST00000513123 | -0.1433 | 214 | - | CHOL | | ENSG00000272155 | ENST00000606067 | GFM1 | ENSG00000168827 | ENST00000486715 | -0.1056 | 313 | - | CHOL | | ENSG00000272155 | ENST00000606067 | GFM1 | ENSG00000168827 | ENST00000264263 | -0.1056 | 313 | - | CHOL | | ENSG00000272155 | ENST00000606067 | BACE1 | ENSG00000186318 | ENST00000510630 | -0.7625 | 186 | - | CHOL | | ENSG00000272155 | ENST00000606067 | BACE1 | ENSG00000186318 | ENST00000428381 | -0.7925 | 282 | - | CHOL | | ENSG00000272155 | ENST00000606067 | BACE1 | ENSG00000186318 | ENST00000513780 | -0.7925 | 282 | - | CHOL | | ENSG00000272155 | ENST00000606067 | BACE1 | ENSG00000186318 | ENST00000445823 | -0.7925 | 282 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272155.1 | ENST00000606067.1 | 75 | 61 | 288 |
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