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lncRNA: ENSG00000272106

Summary for RP11-345P4.9

Gene summary

Gene information	Ensembl ID	ENSG00000272106
	Gene symbol	RP11-345P4.9
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-345P4.9

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272106	1.766524e+02	-1.200041e+00	2.407516e-01	-4.984559e+00	6.210000e-07	4.240000e-06	DOWN	CHOL
ENSG00000272106	2.791151e+02	-1.696225e+00	4.261084e-01	-3.980737e+00	6.870000e-05	8.949990e-04	DOWN	CESC
ENSG00000272106	2.453775e+02	-1.265541e+00	1.285942e-01	-9.841350e+00	7.470000e-23	2.070000e-21	DOWN	HNSC
ENSG00000272106	1.248711e+02	-1.164256e+00	9.818942e-02	-1.185724e+01	1.970000e-32	6.080000e-31	DOWN	COAD
ENSG00000272106	2.350055e+02	-1.063068e+00	1.158572e-01	-9.175679e+00	4.490000e-20	3.120000e-18	DOWN	STAD
ENSG00000272106	1.275857e+02	-1.141868e+00	1.987467e-01	-5.745345e+00	9.170000e-09	1.910000e-07	DOWN	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272106	-4.725585e-01	2.928325e-06	KICH	7.239968e-06
ENSG00000272106	-3.471657e-01	1.160886e-18	KIRC	7.570994e-18
ENSG00000272106	-3.956688e-01	2.206368e-12	KIRP	4.992929e-11

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lncRNA-Protein interaction for RP11-345P4.9

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272106	ENST00000607222	RP11-345P4.9	ENSG00000100461	RBM23	10.37	90.5952	Q86U06	RBP	NA

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lncRNA-DNA interaction for RP11-345P4.9

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

C6orf89,MAD2L2,ARL16,PUM1,TCEA2,STRN4,ZSWIM9,ARFIP2,CTF1,GPR108,GBF1,DNAJC27,TMEM234,BRD1,MAST3,CIRBP,KIFC3,DYNC2LI1,PRX,MZF1,WDR83OS,C1orf56,SIRT3,QPCTL,MAPK8IP3,LYSMD4,CACFD1,SUGP2,CITED2,FKRP,TXNDC16,ACD,FAM193A,XAB2,MIEF2,SIDT2,PTPRS,LRRC42,HSDL1,GDAP1,ULK3,EPCAM,LRRC41,ZFP14,STK16,NPEPL1,EFS,WDR5B,ST7L,WDR54,SAFB2,KCTD13,MSANTD2,NAPA,TUBGCP6,PLPPR2,FAAP20,C6orf136,SLC18B1,USP30,TERF2IP,INPP5B,IRX2,PPIH,INPP5K,BRPF1,SLC66A2,CCDC8,UFSP2,PAF1,SLC2A11,SVBP,GKAP1,KYAT3,ASB13,SUGP1,SPG7,PPP1R3E,NAA80,MIDN,MACO1,FAM104B,C19orf44,SRSF4,RNF167,SIAH1,PJA1,PPIP5K1,CLCN6,ECHDC2,CYB5D2,GLRX5,TMEM198,IGIP,ZFP1,RFX2,BRSK1,FAM219B,CA11,FIG4,CLSTN1,NFIA,NEBL,RING1,SLC22A17,CEP89,RIC8B,TMEM39B,GTF2F1,RAPGEF3,PAQR7,CBY1,NPHP4,WDR83,CTC1,AGBL5,SAMD11,NCDN,GABPB1,RABL2A,NASP,C3orf18,DHPS,RPAIN,NOC2L,ACYP1,CASP9,SLC25A29,MON1A,FOXJ3,CFAP298,MBD5,B3GALT6,ANO8,PGAP3,GET1,GLG1,NAPB,RAF1,ARID1A,C3orf62,PNMA8A,ZADH2,YJU2,MAP6,CBX7,PRMT9,CEP104,ZBED8,BORCS6,DHODH,YTHDC1,RAP1GAP,COQ7,MAPRE3,C22orf39,FGFBP3,KCTD2,DDX51,PIGZ,SSBP2,PRPF38A,TSC22D4,C1orf52,CUL9,CDK11A,BTF3L4,FBXW4,FAM229B,VARS2,SUPT5H,TOE1,IPO13,ATG4B,ARHGEF40,CHST10,NXF1,DCUN1D2,CDKN2C,CBX6,PAN2,PNMA1,IL17RC,SIX5,FAM229A,LRTOMT,YIF1B,SGTA,MOAP1,GIGYF1,HMGN3,ZNF14,YIPF3,MBTPS1,PPT2,BRD2,SORBS2,SLC25A28,DZIP1,STK25,BTBD9,CZIB,NIPAL3,KLHL17,ARHGAP33,MBTD1,DMAC2L,LNP1,DNASE1,SEPSECS,HEXD,IFT122,TNPO2,DVL2,GAS8,VCPKMT,TMEM50B,TTC3,KDM1A,SCNN1D,CCDC24,MKRN2,LYSMD1,SEPHS1,AHDC1,KAT14,NEDD9,TXNIP,TDRP,EAPP,ATPAF1,C4orf3,IGSF8,ZFP3,RCHY1,CES2,ABHD8,IQCC,CASTOR3,ARHGEF9,ZNF30,FAAP100,OARD1,RAB28,ZFYVE28,TMEM254,ADSS1,FAM172A,SLC26A11,TRMO,IFT57,MED16,ILF3,CIZ1,DPY19L3,STK11,RANBP3,PPP1R12C,C1orf159,ATP2A3,PRR3,FAM98C,NICN1,IP6K2,PPOX,BBOF1,CABIN1,ATP13A2,KLHL15,RSBN1,NPRL3,MAZ,MLLT6,RTL6,DNAJB5,PIGH,MRPL20,C9orf78,MAGI2,C20orf96,ADGRA3,GRIK5,PHF7,TESK2,COG8,HPF1,CAPN10,DHDDS,SMARCB1,BANP,ACYP2,EXD2,APBB1,CTDSP1,WDR59,MAML3,MUL1,TMEM175,DNAJC8,RAB36,C11orf68,ADD1,PHF12,GPN2,TNK2,INTS11,ZZZ3,TMEM220,HMGN2,IFT140,IFT74,C5orf38,SLC9A3,CSNK1D,GDPD3,SPACA9,ATXN10,SLC25A42,ZNF44,NAP1L2,CDK20,ASPHD1,BAP1,MPP2,MTURN,PKD1,AMIGO1,PHC1,ANAPC13,MEPCE,PABIR1,TCTA,ANAPC2,CCDC106,NFYC,MTOR,MLF1,IFT80,BBS2,NEK9,FBXO44,CPLANE2,SPECC1L,PTPRN2,EXD3,AGPAT1,GLT8D1,C17orf75,LRIG2,PPP1R13B,SLC38A10,P4HTM,SBK1,PATZ1,LCMT2,ABTB1,PRRT3,PCED1A,PHF13,ELP5,SP2,TBCB,DTX1,DYNLT2,BRF1,CEP70,PPP1R3F,RAB17,MAU2,DZIP3,RAB2B,UBOX5,CYB561D1,DNAJC19,IFNLR1,ANKRD65,PRXL2B,H2BC21,ZNF48,GALT,DENND6B,PEX11G,ACACB,LRRC56,SCAP,KATNB1,FAXDC2,IL11RA,TLE2,LTBP4,EYA3,NEK8,PEX11A,MBD3,MARK4,GSTO2,FIZ1,TATDN2,LTB4R,LRP3,PSPN,HDAC1,RNF220,PRKD1,ROGDI,POMGNT2,CD2BP2,KIAA0319L,TMEM218,PTOV1,MED29,KIF1A,RAB11FIP3,PUSL1,ARHGAP39,C18orf32,FRS3,SZRD1,C2orf68,FBXL8,ZSWIM8,SLC41A3,ZNRF1,EHMT1,ZNF862,KHDC1,CASKIN2,TRIM28,ARHGEF19,MCCC1,SFRP1,BTBD6,CDIPT,FXR2,SYF2,CRMP1,SMAD4,GDI1,UBXN6,NLRP1,CNPY4,SFXN5,GGT7,EPM2AIP1,TTC12,ABHD4,DENND2A,GSTA4,SYNGAP1,SRR,FANCC,GPSM1,CAPZB,PER1,DHRS1,UBXN11,BMERB1,CCDC71,NHLRC4,BCAR3,BSDC1,SSBP3,CROCC,PLXNB1,TFDP2,RSAD1,DHRS11,USF2,PPP1R26,ATPAF2,NBPF1,AKR7A2,SCAMP5,SFPQ,B3GNT9,AMT,TRIOBP,ACAP3,ABLIM1,TMEM59,PANK4,ZSWIM5,EMC10,CNNM2,MVD,MTCH1,ENKD1,ATP5IF1,ZDHHC1,ZNF10,MAPK10,CPTP,KCNC3,LRRC14,NISCH,DET1,ATAT1,SPRYD4,DUT,STMN1,PRKCZ,PREPL,PEF1,RALGAPA1,ZBTB4,MEGF6,CTBP1,POMT1,WDR25,ATXN7L2,ANK3,DALRD3,STMP1,FAM214A,RBM23,SCTR,UBTF,TTC5,SLC43A2,POMGNT1,UBE2J2,TJAP1,EFNB3,NAT14,MKS1,WDTC1,SPIN3,C7orf26,MARCHF9,NPRL2,IRF2BPL,CCNL2,SNX17,DCAKD,TMEM53,FBXO46,DMPK,CCDC115,CLK3,TOM1L2,HDAC11,INCA1,DPH2,ZMYND12,ZER1,CHTOP,HHLA3,KANSL3,USP11,RFNG,MED25,FAM167A,PRKACA,SGSM3,TP53I13,MARCHF8,COQ4,C1orf174,OSBPL7,PI4KB,PBXIP1,BEX5,PHLDB3,ALG14,ARMC5,ST6GALNAC6,RNF123,NFRKB,UBALD1,TMCO4,ACBD4,SLC45A4,BRWD1,U2AF2,CHD3,BORCS7,DFFA,PLA2G6,OPHN1,PDK2,RNPS1,ZBTB3,SPATA6,TERF2,RHPN1,ENDOV,COL9A2,POLR3H,RNF150,GLB1L,PPIE,MBIP,KANSL1L,CHMP1A,SH3BGR,TRAM1L1,ERMARD,HDHD2,TRIM45,WHRN,SUOX,PSKH1,EPC1,ZNF22,ZHX3,PHF1,TMEM59L,MTHFR,HIRA,CETN2,HEXIM2,CHADL,DYNLL2,KLC4,STPG1,SCRN2,NOL9,ANKS3,GON7,UCK1,CBX4,SMDT1,PIGQ,HECTD3,ANKRD54,MARCKSL1,USP19,PRRC2A,MEGF8,PGAP4,POMT2,MMACHC,WIZ,VMAC,SOGA1,MEAF6,SCMH1,PSPC1,ZFYVE21,NHSL1,ASRGL1,MADD,EPM2A,VAMP3,PRDM2,ECSIT,ACTR1B,SOCS2,CENPS,QRICH1,NAB2,DEXI,JUP,DDX31,SPOP,HOOK2,PEX14,TMUB2,NSUN6,FAM161B,KIAA2013,ZMYM3,DNMT3A,SDF4,ABCD4,DPH1,SALL1,TRAPPC3,MYL6B,TNK1,C19orf47,NAP1L3,NEIL1,SZT2,VPS33B,DTX3,KPTN,SELENBP1,RNF215,WWP2,TLE5,GTF3C1,CRAMP1,KLHL22,WDR6,TMEM25,COA5,BRD8,MICOS10,BTBD2,MAP2K7,BBS4,C14orf93,LRSAM1,DPH7,XRCC1,SCD5,EIF1B,TRA2A,SH3BP5L,DPH5,RETREG2,UBE2M,NEURL4,PNPLA7,IP6K1,APBB3,CRELD1,GPS1,NRIP2,LTBP3,RAB5B,CYTH2,BDH2,IRF2BP1,WBP1,ERMAP,PAIP2B,TEPSIN,ADAL,WDR37,TUBB2B,COL4A5,SSR2,CTNNBIP1,C1orf210,NELFB,KLF9,TAF6L,USP2,NUDT16L1,TMEM167B,CFDP1,C15orf61,TMEM115,SMPD3,MDC1,CYS1,ATN1,KDF1,PYGO2,NRF1,PPFIA3,C1orf122,DCTN3,COQ8B,IER2,ZNF2,KAT7,RRNAD1,ADGRL1,CCDC92,ZXDC,KAT8,TRIM39,PEX6,HSBP1,FZR1,KCTD6,RP11-523H20.5,GBA2,CSAD,KIAA0895L,ZNF77,OSCP1,MUTYH,ZNF74,DCAF8,OBSL1,TMEM259,POFUT2,CACTIN,ASMTL,ZBTB5,TCEA3,VPS37B,LIN37,B4GAT1,IFT27,AKT1S1,RECQL5,NIPSNAP3B,ASB6,AKT2,BCL2L2,LRRC75B,SWSAP1,TBC1D17,ISCA1,GOLGA1,ZC3H4,ARL3,EXTL2,DLG4,C1orf216,CENPT,TM2D3,PACS2,S100PBP,SHC2,CALCOCO1,CFAP410,VAMP2,POGZ,SIRT2,CTSF,SLC35E2B,C1orf50,OAZ2,RBM4B,TSC2,TECPR2,DNAJB2,PCNT,CCDC102A,SYT11,C21orf58,BEND5,TAF1C,RBM14,LDHD,ASAP3,TMEM143,IKZF4,LCAT,PAFAH2,OGFOD3,AAAS,DDAH1,PRIMPOL,BAIAP3,TADA2B,CXXC1,SPHK2,WDR20,LRP6,EZH1,FTO,MRNIP,SS18L1,ELMOD3,DYRK1B,TTLL1,GNB5,ARMC6,GPATCH3,GSTM2,TRIM62,ING4,SLC20A2,HAUS5,SENP7,ARVCF,BBS12,EPB41,NINL,MARF1,PRAF2,SDR39U1,TELO2,LIN52,IFT46,CDAN1,EID1,FAM216A,FAF1,STK19,C12orf76,WDR31,VPS52,FAM228B,MED22,SLC25A23,NCKIPSD,USP21,TIGD1,CNNM3,GPS2,PCBP4,THAP3,MTFR1L,SPIN2B,CRYZL1,PCP2,LMBRD1,MAP7D1,DFFB,SALL2,TTC32,BAHCC1,FBXO31,SPATA33,TAPT1,CBR4,CBWD2,RERE,BAG6,H2AC6,SOX12,C1orf109,SPATA24,SORBS3,PER3,RFX1,POLR2E,KLHDC3,SPAG16,DUSP28,CLIP3,BOLA1,PXMP2,DNAJC11,YPEL3,CASZ1,C19orf71,ZNF17,DOT1L,GNG7,ZNF84,PRPSAP1,ADRA2C,LDB1,RXRB,PARP6,GNL1,WDR33,NDUFV3,HOOK1,PMPCA,OLFM2,MRPS14,SH3GLB2,RCBTB2,FBXO42,TMEM125,DCAF11,MAPK3,DXO,USP20,NELFA,CCDC57,FGFR2,RABL2B,MRFAP1L1,TMEM178A

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DPH7,C14orf93,APITD1,TCEAL3,MKRN2,PEX11G,C21orf58,DGCR8,SMARCA2,PHF7,PITHD1,EFHC1,ULK1,TRA2A,MED16,GPATCH3,MAPK3,XRCC1,ZFP14,SH3GLB2,IST1,DHDDS,FAM73B,LDOC1L,HOOK1,TATDN2,USF2,OSCP1,TCEAL2,ATP13A2,MAPK8IP3,WDR31,MIIP,KAT5,VMAC,SUPT5H,MZF1,NAP1L3,VAMP2,C3orf62,EXD2,POLR3H,BAP1,FBXO46,TMCO4,TMEM201,FBXO42,NINL,MARCH8,PRMT9,CCDC8,SUGP1,PKIG,MIDN,FGFBP3,IVD,PIGV,DNAJC8,EPM2A,PALM,PEX6,SLC25A38,PPT2,FZR1,ATXN7L3B,AP4B1,DCAF8,PCNT,C22orf39,SMARCB1,SOCS5,ROGDI,MEAF6,KIZ,NFRKB,RSG1,DHPS,KHDC1,DMPK,C6orf89,DHX30,TSC22D4,CTC1,TMEM246,VARS2,IRF2BPL,E4F1,WDR48,PEX11A,UBXN6,ZNF14,MAP6,GPANK1,PSPC1,BDH2,SLC20A2,LDHD,BRD2,DEXI,GSTA4,SDR39U1,SDHB,WASF3,CXXC1,C17orf75,IFT74,SEPSECS,CCDC92,IFT57,CRTC1,ENGASE,C2orf68,KIAA0319L,SAT2,OGFOD3,SLC26A11,HIST3H2A,GSTM2,ATPIF1,MLLT1,CYTH2,HDAC1,TUBB2B,SBK1,WDR35,ING5,WWP2,WDR13,DPH2,ZC3H4,DFFA,CABIN1,NFIA,RAB5B,KCTD2,MUL1,TTLL1,LYSMD4,CA11,MEPCE,HAUS5,DNAJB5,ECSIT,EID2B,TESK2,TJAP1,BORCS7,EPC1,PARK7,SVBP,KANSL1L,IFT140,ALG14,C19orf44,PPP2R1A,MAPRE3,KTI12,ZNRF1,VPS37D,ASB13,TLE2,CEP89,SFRP1,THAP3,ERMAP,VPS33B,DOT1L,PHACTR4,IER2,SLC25A14,ZBTB4,U2AF2,PER1,EYA3,POGZ,EAPP,ELAC1,RALGAPA1,GGA1,C14orf142,CCDC130,PRRC2A,MAGEF1,UFSP2,PHF13,ABCD4,C21orf59,FAF1,MRPS14,TRIOBP,ACTR1B,KDM4A,ADGRL1,PRRT3,MCCC1,S100PBP,POMT1,FOXJ3,CAMSAP3,CPSF7,CBY1,ARIH2OS,PPP1R12C,TOM1L2,PRMT6,TMEM50B,MEGF8,CDAN1,SGSM3,SORBS2,ATXN1L,MAST3,CNPY4,ZFYVE9,EID2,LRRC41,COQ10A,OXLD1,ZNF30,SORBS3,CHST10,SPATA24,C1orf56,RBM5,NICN1,FXR2,ZER1,KPNA5,C9orf114,ING4,C2orf81,BCL9,BEND5,CRYZL1,GBA2,USP2,C14orf79,SSR2,NEDD9,AURKAIP1,INPP5K,TRMO,RALGPS1,SRSF5,PPARD,PRR14,RAPGEF3,PAF1,MAU2,YIF1B,GLG1,CCDC106,EZH1,SZRD1,MOAP1,KPTN,KCTD15,COQ7,FANCC,RERE,DPH1,ARIH2,ZNF48,ST6GALNAC6,SPIN2B,SGTA,PNMAL1,MED29,HIRA,WDR59,CIRBP,UBTF,KIAA2013

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-345P4.9

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SNX10,SLC16A3,B2M,HTATIP2,ERGIC2,TCIRG1,LY96,LDHA,IFI16,HEXB,ATIC,SIGLEC9,SSR3,SP100,LIMS1,ACTR3,RASSF3,MAN2B1,CORO1C,ANXA2,PTRH2,TUBA1C,RPL22L1,CGAS,FGD6,EVI2B,BAZ1A,ORMDL2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000272106	ENST00000607222	exon_skip_67681	chr11:893426-893519	-25.93	-0.3813	CHID1	ENST00000323578,ENST00000436108,ENST00000449825	In-frame
ENSG00000272106	ENST00000607222	exon_skip_302353	chr19:11033766-11033865	-22.07	-0.4164	SMARCA4	ENST00000344626,ENST00000429416	In-frame
ENSG00000272106	ENST00000607222	exon_skip_322579	chr19:55455635-55455845	-37.59	-0.1908	ISOC2	ENST00000425675	In-frame
ENSG00000272106	ENST00000607222	exon_skip_421737	chr4:3428557-3428711	-14.67	-0.1497	RGS12	ENST00000336727,ENST00000344733	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_150854	chr17:32366664-32366757	-11.19	-0.1272	ZNF207	ENST00000321233	In-frame
ENSG00000272106	ENST00000607222	exon_skip_89597	chr12:6672349-6672532	-36.99	-0.2450	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000272106	ENST00000607222	exon_skip_111672	chr14:23089981-23090101	-18.56	-0.2651	ACIN1	ENST00000262710	In-frame
ENSG00000272106	ENST00000607222	exon_skip_140275	chr16:635280-635340	-19.64	-0.3446	METTL26	ENST00000301686	In-frame
ENSG00000272106	ENST00000607222	exon_skip_4279	chr1:36174897-36175008	-24.44	-0.2945	MAP7D1	ENST00000373151	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000272106	ENST00000607222	exon_skip_324294	chr2:27774423-27774530	-13.34	-0.1321	MRPL33	ENST00000296102	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_111863	chr14:23565815-23565892	-22.17	-0.4031	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_131398	chr15:101286213-101286293	-14.61	-0.1873	SNRPA1	ENST00000254193	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_140232	chr16:634888-634956	-12.66	-0.2813	METTL26	ENST00000301686	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_152304	chr17:39745912-39746000	-16.67	-0.2284	GRB7	ENST00000309156,ENST00000394209,ENST00000394211	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_326885	chr2:74490024-74490127	-21.58	-0.2225	TTC31	ENST00000233623	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_494079	chr8:144099080-144099205	-29.55	-0.2570	SHARPIN	ENST00000398712	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_501752	chr9:136992924-136992974	-12.08	-0.3897	PAXX	ENST00000371620	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_148110	chr17:4892401-4892512	-25.39	-0.2418	MINK1	ENST00000355280	In-frame
ENSG00000272106	ENST00000607222	exon_skip_325891	chr2:62987930-62988038	-9.54	-0.1037	EHBP1	ENST00000263991	In-frame
ENSG00000272106	ENST00000607222	exon_skip_481821	chr8:22067084-22067159	-17.48	-0.3719	DMTN	ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266	In-frame
ENSG00000272106	ENST00000607222	exon_skip_111870	chr14:23566561-23566686	-17.41	-0.1674	AP1G2	ENST00000397120	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_149052	chr17:8289502-8289588	-12.37	-0.1509	RANGRF	ENST00000226105	Frame-shift
ENSG00000272106	ENST00000607222	exon_skip_356643	chr20:35632162-35632234	-13.11	-0.2384	CPNE1	ENST00000352393,ENST00000397443	In-frame
ENSG00000272106	ENST00000607222	exon_skip_374375	chr3:49675182-49675309	-21.29	-0.1901	APEH	ENST00000296456	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614468-1614560	200.00	-66.87	90	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614134-1614224	168.00	-100.36	89	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1615610-1615690	164.00	-68.68	80	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1615353-1615439	161.00	-72.86	87	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614812-1614899	157.00	-71.96	85	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614218-1614306	153.00	-88.02	88	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1613934-1614018	152.00	-97.11	90	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1615125-1615210	152.00	-82.03	85	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614577-1614657	149.00	-71.02	85	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1614688-1614770	142.00	-73.01	81	NA
ENSG00000272106	hsa-mir-142	ENST00000607222	chr1:1615682-1615762	141.00	-73.60	85	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1615612-1615682	193.00	-54.68	75	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1613979-1614051	167.00	-87.30	72	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1615090-1615168	167.00	-70.18	77	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614991-1615053	160.00	-65.06	65	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1615371-1615437	158.00	-58.75	65	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614675-1614753	155.00	-57.70	78	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614886-1614950	155.00	-58.61	67	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1613872-1613945	152.00	-77.97	68	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614102-1614175	152.00	-81.93	71	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1613761-1613840	149.00	-81.17	72	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1615258-1615332	149.00	-75.66	73	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614811-1614878	147.00	-61.96	70	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614178-1614248	143.00	-72.79	71	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614752-1614819	143.00	-70.71	72	NA
ENSG00000272106	hsa-mir-21	ENST00000607222	chr1:1614537-1614609	142.00	-76.45	69	NA

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Variants for RP11-345P4.9

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000272106	ENSG00000008710	PKD1	ACC,CESC,LAML,LUAD,PAAD,TGCT,THCA		CESC
ENSG00000272106	ENSG00000109618	SEPSECS	ACC,CESC,CHOL,KICH,THCA		CHOL
ENSG00000272106	ENSG00000117640	MTFR1L	ACC,BLCA,BRCA,CESC,COAD,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,READ,STAD,TGCT,THCA,THYM,UCEC,UVM		CESC,HNSC,STAD
ENSG00000272106	ENSG00000117682	DHDDS	ACC,COAD,KICH,KIRC,LIHC,PCPG,READ,UCS,UVM		COAD,READ
ENSG00000272106	ENSG00000125648	SLC25A23	ACC,COAD,GBM,KIRC,READ,THCA,UVM		COAD,READ
ENSG00000272106	ENSG00000129473	BCL2L2	ACC,COAD,KIRC,PAAD,READ,TGCT,THCA		READ
ENSG00000272106	ENSG00000130023	ERMARD	ACC,CHOL,KICH,KIRP,PAAD,THCA,THYM		CHOL
ENSG00000272106	ENSG00000131089	ARHGEF9	ACC,BLCA,CHOL,DLBC,GBM,KICH,PAAD,READ,TGCT,THCA		READ
ENSG00000272106	ENSG00000137094	DNAJB5	ACC,GBM,KICH,READ,THYM		READ
ENSG00000272106	ENSG00000142686	C1orf216	ACC,CESC,CHOL,PCPG,TGCT		CESC
ENSG00000272106	ENSG00000156050	FAM161B	ACC,CESC,KICH,KIRC,PAAD,THCA,UVM		CESC
ENSG00000272106	ENSG00000160058	BSDC1	ACC,CHOL,COAD,GBM,KICH,KIRC,LGG,LUAD,PAAD,PCPG,PRAD,THCA,UCS,UVM		CHOL
ENSG00000272106	ENSG00000160445	ZER1	ACC,COAD,KIRC,KIRP,PAAD,READ,TGCT,UVM		COAD
ENSG00000272106	ENSG00000162384	CZIB	ACC,CESC,KICH,LGG,LIHC,READ,SKCM,THCA,THYM,UVM		CESC
ENSG00000272106	ENSG00000165943	MOAP1	ACC,BLCA,CESC,DLBC,HNSC,KICH,KIRC,LAML,LUAD,LUSC,PAAD,READ,TGCT,THCA		CESC
ENSG00000272106	ENSG00000166780	BMERB1	ACC,CESC,GBM,KIRC,KIRP,LUSC,PAAD,TGCT		CESC
ENSG00000272106	ENSG00000170634	ACYP2	ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,LGG,LIHC,LUSC,MESO,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCS		CHOL,HNSC
ENSG00000272106	ENSG00000175662	TOM1L2	ACC,CHOL,COAD,GBM,KICH,KIRC,KIRP,LUAD,PAAD,READ,THCA,UVM		COAD,READ
ENSG00000272106	ENSG00000176903	PNMA1	ACC,CESC,GBM,KICH,PAAD		CESC
ENSG00000272106	ENSG00000180011	ZADH2	ACC,CHOL,COAD,DLBC,KICH,KIRC,KIRP,PAAD,TGCT,THCA		CHOL
ENSG00000272106	ENSG00000182093	GET1	ACC,CESC,KICH,PAAD,THCA		CESC
ENSG00000272106	ENSG00000185100	ADSS1	ACC,HNSC,PAAD,TGCT,THCA,THYM		HNSC
ENSG00000272106	ENSG00000197283	SYNGAP1	ACC,CESC,KICH,OV,PAAD,TGCT		CESC
ENSG00000272106	ENSG00000255302	EID1	ACC,CESC,LIHC,PAAD,THCA,THYM,UCEC		CESC
ENSG00000272106	ENSG00000090006	LTBP4	BLCA,COAD,DLBC,MESO,READ,TGCT,THCA		COAD,READ
ENSG00000272106	ENSG00000116885	OSCP1	BLCA,CESC,KICH,KIRC,KIRP,LUAD,PAAD,PCPG,PRAD,SKCM,THCA,THYM,UVM		CESC
ENSG00000272106	ENSG00000156345	CDK20	BLCA,COAD,GBM,KICH,KIRP,PAAD,THCA		COAD
ENSG00000272106	ENSG00000160325	CACFD1	BLCA,COAD,GBM,KICH,KIRC,KIRP,PAAD,SKCM,UCS,UVM		COAD
ENSG00000272106	ENSG00000165113	GKAP1	BLCA,CHOL,KIRP,PAAD,THCA,UCEC		CHOL
ENSG00000272106	ENSG00000166848	TERF2IP	BLCA,CESC,CHOL,GBM,HNSC,KIRC,LUAD,LUSC,PAAD,THCA,UCS		CESC
ENSG00000272106	ENSG00000169762	TAPT1	BLCA,CESC,DLBC,HNSC,KIRP,PAAD,THCA,UCS		CESC
ENSG00000272106	ENSG00000181035	SLC25A42	BLCA,CESC,COAD,GBM,LUAD,LUSC,PAAD,THCA,THYM		CESC,COAD
ENSG00000272106	ENSG00000181754	AMIGO1	BLCA,CESC,CHOL,KICH,LUAD,LUSC,PAAD,UVM		CESC
ENSG00000272106	ENSG00000121310	ECHDC2	BRCA,HNSC,KICH,KIRP,LUAD,LUSC,MESO,PAAD,STAD,THCA,UCS		HNSC
ENSG00000272106	ENSG00000142599	RERE	BRCA,CESC,GBM,HNSC,KICH,KIRC,LGG,LUAD,LUSC,MESO,OV,PCPG,THCA,UCS		CESC
ENSG00000272106	ENSG00000162572	SCNN1D	BRCA,CHOL,GBM,LAML,LGG,LIHC,LUAD,MESO,PAAD,PCPG		CHOL
ENSG00000272106	ENSG00000183741	CBX6	BRCA,CESC,CHOL,KICH,KIRC,PAAD,PCPG,TGCT		CESC
ENSG00000272106	ENSG00000220205	VAMP2	BRCA,CESC,CHOL,COAD,DLBC,KICH,KIRC,KIRP,LAML,LUAD,LUSC,MESO,PAAD,READ,STAD,THCA,THYM,UCS,UVM		CESC,COAD,READ,STAD
ENSG00000272106	ENSG00000224051	CPTP	BRCA,CHOL,COAD,DLBC,ESCA,KIRC,KIRP,LAML,LGG,LUSC,MESO,READ,SARC,TGCT		CHOL
ENSG00000272106	ENSG00000011021	CLCN6	CESC,CHOL,DLBC,ESCA,GBM,KICH,KIRC,LGG,LUAD,LUSC,OV,PAAD,PCPG,THCA,UVM		CESC
ENSG00000272106	ENSG00000053702	NRIP2	CESC,CHOL,KICH,PAAD,THCA		CESC
ENSG00000272106	ENSG00000070018	LRP6	CESC,GBM,KICH,KIRC,THCA,UCS		CESC
ENSG00000272106	ENSG00000100307	CBX7	CESC,CHOL,COAD,KIRC,KIRP,LUAD,PAAD,READ,THCA,UVM		CESC,COAD,READ
ENSG00000272106	ENSG00000108799	EZH1	CESC,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LUAD,PAAD		CESC
ENSG00000272106	ENSG00000121067	SPOP	CESC,CHOL,DLBC,KICH,PAAD,THCA		CESC
ENSG00000272106	ENSG00000132718	SYT11	CESC,GBM,KICH,LUSC,PAAD,TGCT,UVM		CESC
ENSG00000272106	ENSG00000135093	USP30	CESC,CHOL,GBM,PAAD,TGCT,THCA		CHOL
ENSG00000272106	ENSG00000135473	PAN2	CESC,CHOL,DLBC,KICH,LUAD,OV,PAAD,THCA,UCS		CHOL
ENSG00000272106	ENSG00000140543	DET1	CESC,DLBC,KIRC,KIRP,THCA,THYM,UVM		CESC
ENSG00000272106	ENSG00000144647	POMGNT2	CESC,CHOL,GBM,KICH,KIRC,LUSC,PAAD,TGCT,THCA,THYM,UVM		CESC
ENSG00000272106	ENSG00000146966	DENND2A	CESC,COAD,KICH,KIRC,KIRP,PAAD		CESC,COAD
ENSG00000272106	ENSG00000149577	SIDT2	CESC,CHOL,COAD,READ,THCA,UCS		CESC,CHOL,COAD
ENSG00000272106	ENSG00000150281	CTF1	CESC,KICH,KIRC,KIRP,LUAD,MESO,OV,UCS,UVM		CESC
ENSG00000272106	ENSG00000166275	BORCS7	CESC,KICH,KIRP,PAAD,THCA,THYM		CESC
ENSG00000272106	ENSG00000166313	APBB1	CESC,KICH,KIRC,KIRP,PAAD,THCA,THYM,UVM		CESC
ENSG00000272106	ENSG00000166997	CNPY4	CESC,KICH,PAAD,THCA,UCS		CESC
ENSG00000272106	ENSG00000168056	LTBP3	CESC,KICH,LAML,THYM,UCS		CESC
ENSG00000272106	ENSG00000170271	FAXDC2	CESC,KICH,KIRC,KIRP,THCA,THYM		CESC
ENSG00000272106	ENSG00000174080	CTSF	CESC,CHOL,KICH,KIRP,PAAD,THCA,THYM		CESC,CHOL
ENSG00000272106	ENSG00000180304	OAZ2	CESC,KIRP,MESO,PAAD,THCA,THYM		CESC
ENSG00000272106	ENSG00000180354	MTURN	CESC,CHOL,KICH,KIRC,KIRP,PAAD,TGCT,THCA,UCEC		CESC
ENSG00000272106	ENSG00000182700	IGIP	CESC,CHOL,DLBC,KIRP,PAAD,THCA		CESC
ENSG00000272106	ENSG00000187824	TMEM220	CESC,COAD,KICH,READ,THCA,THYM		COAD,READ
ENSG00000272106	ENSG00000005882	PDK2	CHOL,DLBC,KICH,KIRC,UVM		CHOL
ENSG00000272106	ENSG00000047346	FAM214A	CHOL,DLBC,GBM,PAAD,READ,THCA		CHOL,READ
ENSG00000272106	ENSG00000070759	TESK2	CHOL,COAD,LIHC,READ,UVM		CHOL,COAD,READ
ENSG00000272106	ENSG00000072062	PRKACA	CHOL,COAD,PAAD,TGCT,THYM		CHOL
ENSG00000272106	ENSG00000074370	ATP2A3	CHOL,COAD,DLBC,PAAD,READ		COAD,READ
ENSG00000272106	ENSG00000100014	SPECC1L	CHOL,COAD,KIRP,LUAD,PAAD,THCA		COAD
ENSG00000272106	ENSG00000103264	FBXO31	CHOL,GBM,PAAD,UCS,UVM		CHOL
ENSG00000272106	ENSG00000114784	EIF1B	CHOL,KICH,KIRC,KIRP,PAAD,THYM,UVM		CHOL
ENSG00000272106	ENSG00000120833	SOCS2	CHOL,KICH,KIRC,KIRP,PAAD,THCA		CHOL
ENSG00000272106	ENSG00000132155	RAF1	CHOL,GBM,KIRC,KIRP,UVM		CHOL
ENSG00000272106	ENSG00000135540	NHSL1	CHOL,COAD,GBM,KICH,KIRC,READ,UVM		CHOL,COAD
ENSG00000272106	ENSG00000137936	BCAR3	CHOL,COAD,KICH,KIRC,READ,UCS		COAD,READ
ENSG00000272106	ENSG00000139631	CSAD	CHOL,DLBC,LAML,LUAD,PAAD,UCS		CHOL
ENSG00000272106	ENSG00000141295	SCRN2	CHOL,DLBC,KICH,KIRC,LAML,PAAD,PRAD		CHOL
ENSG00000272106	ENSG00000154556	SORBS2	CHOL,KICH,PAAD,READ,THCA,UCS,UVM		READ
ENSG00000272106	ENSG00000159733	ZFYVE28	CHOL,COAD,KIRC,KIRP,PAAD,READ		COAD
ENSG00000272106	ENSG00000161395	PGAP3	CHOL,KICH,KIRC,KIRP,LAML		CHOL
ENSG00000272106	ENSG00000162227	TAF6L	CHOL,ESCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LIHC,PAAD,THCA		CHOL
ENSG00000272106	ENSG00000164077	MON1A	CHOL,DLBC,GBM,KICH,PAAD,THCA,UVM		CHOL
ENSG00000272106	ENSG00000168575	SLC20A2	CHOL,KICH,KIRC,THCA,THYM		CHOL
ENSG00000272106	ENSG00000169093	ASMTL	CHOL,KICH,KIRC,LAML,PAAD		CHOL
ENSG00000272106	ENSG00000170899	GSTA4	CHOL,KICH,KIRP,PAAD,STAD,TGCT,THCA		CHOL,STAD
ENSG00000272106	ENSG00000172831	CES2	CHOL,COAD,LUAD,THYM,UCS		CHOL,COAD
ENSG00000272106	ENSG00000174010	KLHL15	CHOL,DLBC,KICH,KIRP,PAAD,THCA		CHOL
ENSG00000272106	ENSG00000196372	ASB13	CHOL,KICH,PAAD,TGCT,UVM		CHOL
ENSG00000272106	ENSG00000265972	TXNIP	CHOL,COAD,KICH,KIRP,READ		CHOL,COAD,READ
ENSG00000272106	ENSG00000001460	STPG1	COAD,KICH,KIRC,KIRP,PAAD,READ,THYM,UVM		COAD
ENSG00000272106	ENSG00000036672	USP2	COAD,KICH,KIRC,MESO,PAAD,STAD,UVM		COAD,STAD
ENSG00000272106	ENSG00000066230	SLC9A3	COAD,KICH,KIRC,KIRP,LAML,PAAD		COAD
ENSG00000272106	ENSG00000066468	FGFR2	COAD,KICH,KIRC,READ,THCA		COAD,READ
ENSG00000272106	ENSG00000076555	ACACB	COAD,KIRC,KIRP,PAAD,READ,THCA		COAD,READ
ENSG00000272106	ENSG00000088280	ASAP3	COAD,HNSC,LGG,LUAD,MESO,READ,THCA		COAD,HNSC,READ
ENSG00000272106	ENSG00000102882	MAPK3	COAD,KICH,LAML,READ,THYM		COAD
ENSG00000272106	ENSG00000103056	SMPD3	COAD,PAAD,PCPG,PRAD,READ		COAD,READ
ENSG00000272106	ENSG00000104332	SFRP1	COAD,KICH,KIRC,PAAD,READ		COAD,READ
ENSG00000272106	ENSG00000111859	NEDD9	COAD,KICH,KIRP,TGCT,THYM		COAD
ENSG00000272106	ENSG00000116209	TMEM59	COAD,KICH,KIRP,PAAD,READ,THCA,THYM		COAD,READ
ENSG00000272106	ENSG00000119227	PIGZ	COAD,DLBC,ESCA,PAAD,PRAD,READ,UVM		COAD,READ
ENSG00000272106	ENSG00000148842	CNNM2	COAD,KIRC,PAAD,THCA,UCS		COAD
ENSG00000272106	ENSG00000151150	ANK3	COAD,KICH,KIRC,PAAD,THCA		COAD
ENSG00000272106	ENSG00000158006	PAFAH2	COAD,KICH,KIRC,PCPG,READ		COAD,READ
ENSG00000272106	ENSG00000160408	ST6GALNAC6	COAD,DLBC,KICH,KIRP,LAML,PAAD,READ,TGCT		COAD,READ
ENSG00000272106	ENSG00000164442	CITED2	COAD,KICH,PAAD,READ,THCA		COAD,READ
ENSG00000272106	ENSG00000165406	MARCHF8	COAD,KICH,LIHC,PAAD,THCA,UVM		COAD
ENSG00000272106	ENSG00000166816	LDHD	COAD,HNSC,READ,THCA,THYM,UVM		COAD,HNSC,READ
ENSG00000272106	ENSG00000166821	PEX11A	COAD,KICH,KIRP,LGG,TGCT,THCA		COAD
ENSG00000272106	ENSG00000176894	PXMP2	COAD,KICH,LAML,PAAD,READ,TGCT,THCA		COAD,READ
ENSG00000272106	ENSG00000204219	TCEA3	COAD,HNSC,KICH,LUAD,MESO,READ		COAD,HNSC,READ
ENSG00000272106	ENSG00000219481	NBPF1	COAD,LUSC,OV,READ,TGCT		COAD,READ
ENSG00000272106	ENSG00000278535	DHRS11	COAD,KICH,KIRC,PRAD,READ		COAD,READ
ENSG00000272106	ENSG00000104936	DMPK	DLBC,LGG,READ,TGCT,THCA		READ
ENSG00000272106	ENSG00000137070	IL11RA	DLBC,KICH,KIRC,KIRP,LAML,PAAD,READ,THCA,UVM		READ
ENSG00000272106	ENSG00000161558	TMEM143	DLBC,HNSC,KIRC,LAML,PAAD,THCA		HNSC
ENSG00000272106	ENSG00000074855	ANO8	GBM,HNSC,KICH,TGCT,UVM		HNSC
ENSG00000272106	ENSG00000185437	SH3BGR	KICH,KIRC,KIRP,LUSC,READ,THCA		READ
ENSG00000272106	ENSG00000049246	PER3	KIRC,LUAD,PAAD,PCPG,READ,UCEC,UVM		READ
ENSG00000272106	ENSG00000067836	ROGDI	KIRC,LUAD,MESO,PAAD,PRAD,READ,STAD,UVM		STAD

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000272106	ENST00000607222	ATIC	ENSG00000138363	ENST00000236959	-0.2243	535	CHOL,COAD,READ	-
ENSG00000272106	ENST00000607222	ATIC	ENSG00000138363	ENST00000444305	-0.1617	146	CHOL,COAD,READ	-
ENSG00000272106	ENST00000607222	ATIC	ENSG00000138363	ENST00000435675	-0.2243	535	CHOL,COAD,READ	-
ENSG00000272106	ENST00000607222	ATIC	ENSG00000138363	ENST00000426233	-0.4900	1843	CHOL,COAD,READ	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000272106	RP11-345P4.9,hsa-mir-21,PLAC9	CESC,HNSC,READ,MESO,DLBC
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ANKRD46	CESC,TGCT,THCA,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CCNB1IP1	CESC,THCA,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CNTFR	HNSC,TGCT,THCA,MESO,THYM
ENSG00000272106	RP11-345P4.9,hsa-mir-21,TNS2	CESC,HNSC,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,VAMP2	CESC,THCA,READ,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,FHL1	CESC,HNSC,THCA,READ,PAAD
ENSG00000272106	RP11-345P4.9,hsa-mir-21,SLC25A4	HNSC,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,APOM	THCA,MESO,DLBC,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,TAPT1	THCA,READ,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ACACB	THCA,READ,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CFL2	CESC,HNSC,THCA,READ,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,PTPN21	TGCT,THCA,READ,MESO,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ATP5F1A	THCA,READ,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,PDCD4	HNSC,THCA,READ,MESO,PAAD
ENSG00000272106	RP11-345P4.9,hsa-mir-21,THTPA	TGCT,THCA,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,EPHX2	HNSC,THCA,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,APBB1	CESC,HNSC,TGCT,READ,PAAD,THYM
ENSG00000272106	RP11-345P4.9,hsa-mir-21,MTFR1L	HNSC,TGCT,THCA,READ,PAAD
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CNST	TGCT,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,LMOD1	CESC,HNSC,THCA,READ,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,NDRG2	HNSC,TGCT,THCA,READ,MESO,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ALDH6A1	HNSC,TGCT,THCA,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,NDN	CESC,TGCT,READ,PAAD,THYM
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CIPC	HNSC,TGCT,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,GLRX5	THCA,MESO,DLBC,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,LIMS2	CESC,READ,DLBC,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ITPR1	CESC,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,MAGEH1	TGCT,THCA,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ATP1B2	TGCT,THCA,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,RECK	TGCT,THCA,READ,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,PPP1R12B	CESC,HNSC,THCA,READ,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,DMAC2L	TGCT,THCA,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,FAXDC2	CESC,HNSC,TGCT,THCA,READ
ENSG00000272106	RP11-345P4.9,hsa-mir-21,FAM107A	HNSC,TGCT,THCA,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,DENND2A	CESC,TGCT,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,GPRASP2	CESC,TGCT,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,METTL7A	HNSC,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,NAP1L5	THCA,READ,DLBC,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ST3GAL3	CESC,TGCT,READ,DLBC,PAAD,THYM
ENSG00000272106	RP11-345P4.9,hsa-mir-21,CRY2	CESC,HNSC,THCA,READ,MESO,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,TGFBR3	CESC,HNSC,THCA,READ,MESO,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,MOAP1	TGCT,THCA,MESO,PAAD,THYM,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,PPM1L	HNSC,THCA,READ,PAAD,KIRP
ENSG00000272106	RP11-345P4.9,hsa-mir-21,ACYP2	HNSC,THCA,DLBC,PAAD,THYM
ENSG00000272106	RP11-345P4.9,hsa-mir-21,KLHL15	THCA,MESO,PAAD,THYM,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272106.1	ENST00000607222.1	95	17	304

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential