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lncRNA: ENSG00000271895

Summary for RP4-635E18.8

Gene summary

Gene information	Ensembl ID	ENSG00000271895
	Gene symbol	RP4-635E18.8
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP4-635E18.8

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000271895	1.100514e+02	1.180984e+00	1.309643e-01	9.017603e+00	1.920000e-19	1.120000e-18	UP	KIRC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000271895	4.518875e-01	1.832400e-03	CHOL	2.832809e-03
ENSG00000271895	-5.297951e-01	9.356964e-08	KICH	3.625823e-07

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lncRNA-Protein interaction for RP4-635E18.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271895	ENST00000607145	RP4-635E18.8	ENSG00000181555	SETD2	69.82	91.0692	Q9BYW2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271895	ENST00000607145	RP4-635E18.8	ENSG00000175691	ZNF77	7.74	90.0436	Q15935	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271895	ENST00000607145	RP4-635E18.8	ENSG00000013573	DDX11	73.82	90.0925	Q96FC9	RBP	NA
ENSG00000271895	ENST00000607145	RP4-635E18.8	ENSG00000139746	RBM26	55.59	91.7714	Q5T8P6	RBP	NA

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lncRNA-DNA interaction for RP4-635E18.8

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP4-635E18.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PARP1,SEC23B,OGDH,GNS,PVR,PSMD2,PNPO,LDHA,HSPA8,UHRF1BP1L,MYH9,HEXB,CHP1,CENPN,ATIC,PLIN3,PLAUR,HSPA4,SURF4,ALDOA,CYFIP1,CHTF8,STT3A,COPA,LRP10,NOCT,PKM,NOMO1,GBA,ARF3,CLPB,PLEKHB2,BTD,PCDH1,EIF4G1,TUBA1C,FARSA,AIMP2,TEAD4,TMBIM6,ABHD5,ATP6V0C,RPN2,NOMO2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000271895	ENST00000612387	exon_skip_150854	chr17:32366664-32366757	-7.20	-0.1469	ZNF207	ENST00000321233	In-frame
ENSG00000271895	ENST00000612387	exon_skip_1234	chr1:11658532-11658628	-11.67	-0.2382	FBXO44	ENST00000251547,ENST00000376770	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000271895	ENST00000612387	exon_skip_52671	chr10:97461495-97461622	-11.59	-0.1396	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_66482	chr11:126274926-126275021	-9.09	-0.1021	FOXRED1	ENST00000263578	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_111863	chr14:23565815-23565892	-8.98	-0.1283	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_114365	chr14:74290026-74290118	-10.25	-0.2500	ABCD4	ENST00000356924	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_290158	chr17:42953723-42953778	-7.34	-0.1882	AARSD1	ENST00000427569	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_370518	chr22:50247691-50247776	-10.55	-0.1302	HDAC10	ENST00000216271	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_382458	chr3:38131595-38131638	-6.05	-0.2241	ACAA1	ENST00000333167	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_436035	chr5:79656957-79657001	-5.57	-0.1505	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_11029	chr1:154989559-154989707	-15.20	-0.1078	FLAD1	ENST00000292180	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_41813	chr10:68337857-68337996	-11.25	-0.1032	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_74009	chr11:64773429-64773505	-8.95	-0.1444	SF1	ENST00000377390	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_77641	chr11:117207066-117207160	-10.13	-0.1688	PCSK7	ENST00000320934	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_110959	chr14:20372732-20372857	-12.51	-0.1025	TEP1	ENST00000262715	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_111870	chr14:23566561-23566686	-11.71	-0.4684	AP1G2	ENST00000397120	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_114376	chr14:74293153-74293248	-11.58	-0.1678	ABCD4	ENST00000356924	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_132355	chr16:1786756-1786955	-22.36	-0.1249	NUBP2	ENST00000262302	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_309204	chr19:49181348-49181461	-10.15	-0.1015	TRPM4	ENST00000252826	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_319223	chr19:43526200-43526349	-13.54	-0.1003	ETHE1	ENST00000292147	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_326885	chr2:74490024-74490127	-11.14	-0.1160	TTC31	ENST00000233623	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_357254	chr20:44622587-44622652	-11.63	-0.1817	ADA	ENST00000372874	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_374375	chr3:49675182-49675309	-10.68	-0.1047	APEH	ENST00000296456	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_374497	chr3:49999439-49999513	-10.17	-0.1784	RBM6	ENST00000266022	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_374551	chr3:50100531-50100605	-12.53	-0.2320	RBM5	ENST00000347869	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_384420	chr3:49812647-49812738	-11.71	-0.1446	UBA7	ENST00000333486	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_441368	chr5:32380074-32380172	-10.78	-0.1185	ZFR	ENST00000265069	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_509943	chrX:47175018-47175092	-10.96	-0.1797	RBM10	ENST00000377604	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_4796	chr1:41007448-41007545	-10.51	-0.1251	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_9446	chr1:147270931-147271005	-6.98	-0.1012	CHD1L	ENST00000369258	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_52701	chr10:97468965-97469104	-16.06	-0.1656	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_53559	chr10:101793912-101793998	-7.04	-0.1067	OGA	ENST00000361464	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_62623	chr11:69079833-69079883	-7.57	-0.1893	TPCN2	ENST00000294309	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_79575	chr12:6727925-6728001	-8.69	-0.1975	COPS7A	ENST00000229251,ENST00000534877,ENST00000534947,ENST00000539735,ENST00000543155	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_87733	chr12:120571190-120571291	-13.00	-0.1585	RNF10	ENST00000325954	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_92074	chr12:50142052-50142110	-5.63	-0.1564	CERS5	ENST00000317551	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_95407	chr12:95040475-95040597	-11.50	-0.1386	NR2C1	ENST00000333003	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_132563	chr16:2527560-2527615	-8.51	-0.2934	AMDHD2	ENST00000293971	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_133217	chr16:8635038-8635079	-8.00	-0.2222	METTL22	ENST00000381920	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_138351	chr16:70469151-70469323	-19.77	-0.1582	FUK	ENST00000288078	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_139422	chr16:89114338-89114487	-14.22	-0.1023	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_139933	chr16:90035632-90035687	-8.02	-0.1782	GAS8	ENST00000268699	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_292904	chr17:69251746-69251866	-13.25	-0.1636	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000271895	ENST00000612387	exon_skip_300663	chr19:1425877-1425960	-8.45	-0.3018	DAZAP1	ENST00000233078	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_313557	chr19:5786748-5786845	-16.10	-0.2597	DUS3L	ENST00000309061	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_324294	chr2:27774423-27774530	-8.66	-0.1203	MRPL33	ENST00000296102	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_326825	chr2:73957124-73957240	-11.31	-0.1216	DGUOK	ENST00000264093	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_327433	chr2:86125794-86125880	-7.05	-0.1640	PTCD3	ENST00000254630	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_327748	chr2:95410863-95411026	-19.05	-0.1323	FAHD2A	ENST00000233379,ENST00000447036	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_333962	chr2:219247112-219247246	-13.85	-0.1332	STK16	ENST00000396738,ENST00000409638	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_339830	chr2:69423581-69423717	-13.37	-0.1028	NFU1	ENST00000410022	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_353131	chr20:58669290-58669453	-14.48	-0.1073	STX16	ENST00000371141	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_370525	chr22:50250426-50250523	-10.93	-0.2666	HDAC10	ENST00000216271	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_371367	chr3:9697710-9697866	-14.57	-0.1518	MTMR14	ENST00000296003	In-frame
ENSG00000271895	ENST00000607145	exon_skip_377198	chr3:123130479-123130616	-13.51	-0.1648	PDIA5	ENST00000316218	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_380242	chr3:186784961-186785101	-10.73	-0.1192	EIF4A2	ENST00000323963	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_387016	chr3:121788283-121788432	-10.04	-0.1046	IQCB1	ENST00000310864	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_444499	chr5:138164086-138164133	-5.95	-0.2204	BRD8	ENST00000254900	Frame-shift
ENSG00000271895	ENST00000612387	exon_skip_470226	chr7:103307595-103307708	-9.75	-0.1071	PMPCB	ENST00000249269	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_511212	chrX:71555189-71555385	-19.69	-0.1313	OGT	ENST00000373719	Frame-shift
ENSG00000271895	ENST00000607145	exon_skip_153380	chr17:45137018-45137139	-17.11	-0.1746	ACBD4	ENST00000376955	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11029665-11029760	167.00	-78.78	87	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11029795-11029880	165.00	-82.64	81	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11030262-11030353	165.00	-68.18	87	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11030407-11030489	155.00	-66.23	78	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11029912-11029994	153.00	-67.45	84	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11030015-11030106	146.00	-71.53	88	NA
ENSG00000271895	hsa-mir-22	ENST00000607145	chr1:11030137-11030221	145.00	-72.24	80	NA
ENSG00000271895	hsa-mir-22	ENST00000612387	chr1:11030142-11030233	165.00	-68.18	87	NA
ENSG00000271895	hsa-mir-22	ENST00000612387	chr1:11030287-11030369	155.00	-66.23	78	NA
ENSG00000271895	hsa-mir-22	ENST00000612387	chr1:11029792-11029874	153.00	-67.45	84	NA
ENSG00000271895	hsa-mir-22	ENST00000612387	chr1:11029895-11029986	146.00	-71.53	88	NA
ENSG00000271895	hsa-mir-22	ENST00000612387	chr1:11030017-11030101	145.00	-72.24	80	NA

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Variants for RP4-635E18.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000271895	ENSG00000139746	RBM26	exon_skip_114365	ENSG00000119688:chr14:74290026-74290118	ABCD4	ENST00000356924	Frame-shift	UVM,SKCM,READ,PCPG,THCA
ENSG00000271895	ENSG00000139746	RBM26	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,SKCM,READ,THYM,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PPIH	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,WDR33	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NDE1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C19orf44	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HSF2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RXRB	KICH,CESC,CHOL,ACC,KIRP
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C1orf35	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RWDD3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ARL6IP6	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,STK38	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CERS5	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ATAT1	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RIT1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,COIL	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBM6	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TADA2A	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MTF2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SFPQ	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBM8A	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C12orf76	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NRF1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBBP4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RING1	KICH,CESC,CHOL,ACC,KIRP
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ZNF7	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ESCO1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ILKAP	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NAA16	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TRA2B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ABT1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CNOT11	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PRCC	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RCE1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,JPT2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,KAT2A	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C1orf52	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,STK36	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HMGN1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EHMT2	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ERCC3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF6	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MYL6B	KICH,CESC,CHOL,ACC,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EXOSC2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,LBR	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ORMDL1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C17orf75	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C2orf49	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,VEZF1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,JUP	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,POLR2H	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NAB1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PAXBP1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MCM8	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBM39	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TUBD1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SMARCE1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,GNL1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CBFB	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,KDM1A	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ING5	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SAP30BP	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CEP131	CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CLK2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SSRP1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PRPF38A	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SMPD4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HDAC1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,KHDC4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HEXD	KICH,CESC,CHOL,ACC,KIRP
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MRPL53	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MBTD1	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TIA1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NSD3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NOC2L	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,DPF2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PTMA	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ARFIP2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PKN3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NOP58	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EEF1AKMT2	KICH,CESC,CHOL,ACC,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,STMN1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CDK11B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PRPF38B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TIGD1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CHST14	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SF3A3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,AKAP8	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBMX	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,H3-3B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NEK8	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PMS1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,UTP6	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,FBXO46	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ATG4B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TRMT13	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBM5	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TTF1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SNRPA	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ARL16	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TCF19	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,COPS7B	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CCDC174	CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,INTS11	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SUMO2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PTK7	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MRE11	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF7	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EPN2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PHIP	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C14orf93	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CLASP1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CHTOP	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,RBM14	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CDC37	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MKS1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PCIF1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ABI2	KICH,CESC,CHOL,ACC,KIRP
ENSG00000271895	RP4-635E18.8,hsa-mir-22,FNBP4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HMGB1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ZMYM4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NOL9	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,UBXN11	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,IRF3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CRYZL1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,BUD13	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,WRNIP1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,PRR3	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,IFT172	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NUP85	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,IQCB1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MUTYH	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,HMGB2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ING4	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,IP6K2	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NT5C	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,C11orf49	KICH,CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRRT	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,YY1AP1	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,TMEM216	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SRSF4	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EPCAM	KICH,CESC,CHOL,ACC,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MBD2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,EZH1	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NFRKB	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,MCM3	KICH,CESC,CHOL,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NCK2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,NELFE	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,ZNF16	CESC,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SZT2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,FBXL12	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,SKA2	KICH,CHOL,ACC,KIRP,LIHC
ENSG00000271895	RP4-635E18.8,hsa-mir-22,CCHCR1	KICH,CHOL,ACC,KIRP,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000271895.2	ENST00000607145.1	322	7593	6625
ENSG00000271895.2	ENST00000612387.1	90	412	684

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential