 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CHTOP,PHF1,RBM6,ZBED5,HMGN3,KHDC1,PBX2,CENPT,TTC14,DDX60,DZIP3,RBM5,CIRBP,ELF2,SP100,IRF2,SUGP1,ZNF44,MZF1,NRF1,RFX5,ZNF17,ZNF2,ZXDC,SUGP2,RBM4B,RBPMS,CSTF3,RXRB,TIGD6,TIGD1,PRDM2,RBM14,ZBTB3,RBM8A,MBD4,CWC15,NFYC,NFIA,HINFP,TBP,XPA,SALL2,PPIE,RBM43,CPSF7,MBD2,ZMAT1,DHX58,SFPQ,IRF7,GATA3,CXXC1,NSUN6,SP110,NXF1,SAFB2,THAP6,THOC1,ZNF18,DDX17,MOV10,LARP7,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | GMEB1,TBP,DDX17,MZF1,THAP6,SP110,ZNF18,E4F1,IRF5,CXXC1,ZMAT1,MBNL1,TIGD6,SRSF5,KHDC1,CPSF7,RBM6,DHX30,PBX2,DDX60,NFIA,RXRB,CIRBP,ELF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_146038 | ENSG00000271646.1 | chr4 | 184476145 | + | lincRNA | RP11-326I11.3 | ENST00000605834.1 | lincRNA | RP11-326I11.3-001 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000271646 | LncEditing_146038 | OV | chr4_184476145_+ | 3.849742e+00 | 1.885791e+00 | 9.712587e-01 | 1.012586e+01 | 4.242297e-24 | 2.836940e-23 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000271646 | LncEditing_146038 | -5.737914e-01 | 1.020518e-02 | 2.009555e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000271646 | ENSG00000070476 | ZXDC | ENSG00000100201 | DDX17 | 5 | DLBC,KICH,KIRP,PAAD,THCA | | ENSG00000271646 | ENSG00000067066 | SP100 | ENSG00000174796 | THAP6 | 5 | DLBC,GBM,KICH,MESO,SKCM | | ENSG00000271646 | ENSG00000070476 | ZXDC | ENSG00000174796 | THAP6 | 5 | DLBC,KICH,KIRP,PAAD,THCA | | ENSG00000271646 | ENSG00000065029 | ZNF76 | ENSG00000166432 | ZMAT1 | 5 | CESC,KIRP,PAAD,PRAD,THCA | | ENSG00000271646 | ENSG00000065029 | ZNF76 | ENSG00000100650 | SRSF5 | 6 | CESC,KIRP,LUAD,PAAD,SARC,THCA | | ENSG00000271646 | ENSG00000070476 | ZXDC | ENSG00000004534 | RBM6 | 5 | DLBC,KICH,KIRP,PAAD,THCA | | ENSG00000271646 | ENSG00000065029 | ZNF76 | ENSG00000204304 | PBX2 | 5 | ESCA,KICH,KIRP,PAAD,THCA | | ENSG00000271646 | ENSG00000065029 | ZNF76 | ENSG00000204231 | RXRB | 5 | CESC,KICH,KIRC,PAAD,THCA | | ENSG00000271646 | ENSG00000166432 | ZMAT1 | ENSG00000109381 | ELF2 | 5 | CESC,DLBC,KIRP,PAAD,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000271646.1 | ENST00000605834.1 | 51 | 65 | 220 |
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