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lncRNA: ENSG00000271643 |
Summary for PDCD6IP-DT |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000271643 | Gene symbol | PDCD6IP-DT |
| Gene name | PDCD6IP divergent transcript | |
| HGNC | 55244 | |
| Entrez ID | ||
| Gene type | lincRNA | |
| Synonyms | 03p22.3|PDCD6IP-DT|RP11-10C24.3 | |
| UniProtAcc |
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Structure and expression level for PDCD6IP-DT |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000271643 | 9.591028e+01 | -1.090254e+00 | 8.190731e-02 | -1.331083e+01 | 2.000000e-40 | 3.260000e-39 | DOWN | KIRC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000271643 | 3.999885e-01 | 6.481430e-03 | CHOL | 8.016004e-03 |
| ENSG00000271643 | -4.889446e-01 | 7.362280e-38 | KIRC | 3.313026e-35 |
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lncRNA-Protein interaction for PDCD6IP-DT |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000118058 | KMT2A | 107.46 | 93.8783 | Q03164 | TF,Epi | NA |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000118058 | KMT2A | 107.46 | 93.8378 | Q03164 | TF,Epi | NA |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000100207 | TCF20 | 99.36 | 91.1376 | Q9UGU0 | TF | NA |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000135870 | RC3H1 | 63.87 | 92.0241 | Q5TC82 | RBP | NA |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000145907 | G3BP1 | 21.61 | 90.7786 | Q13283 | RBP | NA |
| ENSG00000271643 | ENST00000604982 | RP11-10C24.3 | ENSG00000174720 | LARP7 | 9.99 | 90.9976 | Q4G0J3 | RBP | NA |
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