 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,CCDC65,PMM2,VAMP1,AMER1,MFSD8,EXPH5,DNAJC27,WDFY1,MZF1,UNK,TTC31,MAPK8IP3,VAMP4,SLF2,GNAQ,TMEM184C,HLTF,PIGG,SENP1,GPATCH11,SLC38A2,TULP3,WDR5B,ST7L,MSANTD2,FAM133B,IBTK,TTC14,SH3GLB1,PPIP5K2,SPTY2D1,C20orf194,ZFP1,NCBP1,FAM219B,RIC8B,UBE3A,THOC2,ZBTB6,OTULIN,GTF3C2,OFD1,ATP9A,PEAK1,SEPTIN10,FCHSD1,PURA,XPNPEP3,ANO8,ZNHIT6,INO80E,HERPUD2,CTDSP2,SEC63,NEMP1,EML4,MIS18BP1,MDN1,SECISBP2L,ORC2,SSBP2,NFKBIZ,VGLL4,PHC3,AIDA,ZZEF1,DHX35,INTS2,SUPT20H,DCUN1D2,UBXN2A,ERGIC2,SMARCAD1,STX6,KHNYN,ZNF14,DZIP1,CDK17,ATG2B,HUWE1,TNPO2,AP4E1,DDX42,EIF4A1,SEC24C,CRYBG3,DNAJC24,PGGT1B,RCHY1,SWT1,BRD3,ARHGEF9,ZNF30,AMMECR1L,TMEM168,SLC26A11,FANCL,TTC17,KLF7,CDC42SE1,PHKA2,UBE2G2,PAWR,MIB1,CEP68,NEMP2,KLHL15,RAP2C,VEZF1,MLLT6,PRPF40A,GSK3B,ZNF70,INO80D,ICE2,AGK,BIVM,CRLF3,TCAIM,KPNA1,STK3,AP1G2,DNAJB4,ZXDA,BANP,ZNF25,TRNT1,KIAA1143,DENND6A,RALGPS2,UBR4,TMED8,NBEAL2,RELL1,OSBPL8,NPR2,CBLB,XPO4,AP1AR,UFL1,PKD1,RIMKLB,SLC25A46,NSD1,FZD3,UTP14C,BBS2,CEP83,LIN54,BMP2K,LRIG2,PCED1A,IKBKB,DTWD2,SART3,DGKE,SRBD1,ANKRD49,PAXBP1,TMOD2,KCTD18,PLEKHA8,RSRP1,CPNE8,EYA3,GOLGA4,FLCN,NVL,ATG14,GOLGB1,FOXP1,PWWP2A,DNAJC18,MYNN,RPE,ANKLE2,SLC39A10,LINS1,ZFR,SCAF11,DDX11,PUS10,NDUFAF7,TOR1AIP2,ZNF862,SLC23A2,PDS5B,EDEM3,ATP6V0A2,SEC24A,KIF3A,SCAMP1,TIMM23B,EXOC7,KHDC4,MIDEAS,MPP3,PIK3CA,ATAD2B,KCNC3,NISCH,ALG11,PREPL,ESCO1,MTMR10,PBX2,FGD6,KLF12,ANGEL2,NAA15,POC5,MYSM1,ITPRID2,METTL15,UIMC1,TJAP1,ELF1,UVRAG,RNF44,TAF1D,CEP95,SLC11A2,USP4,IFT88,TASP1,COX11,SUGT1,GTF3C3,AFTPH,ZMAT3,DHFR2,PRR14L,FAM160A1,BARD1,RPS6KB1,GABBR1,N6AMT1,KANSL3,DENND4A,MPHOSPH9,HECTD1,SP100,EDC4,AGO2,ARL13B,RBM26,PURB,SPATA6,CCNH,SYNE1,MLH3,KANSL1L,WDFY3,ATP8A1,ENTPD4,SMC5,HEATR5B,ZNF106,LCOR,PHF1,PABIR2,FBXL20,CENPC,HSF4,NOL9,OTUD6B,HERC2,TDG,ABHD13,TUBGCP4,RGL3,C2orf49,POLK,PLEKHA3,PRKAA1,PRDM2,WRN,RBL1,SPATA5,R3HDM2,VEZT,USP12,ZGPAT,METTL6,AAK1,TIA1,MOSMO,SP110,SPCS3,ZNF8,BMPR2,SNRNP200,ERCC3,PLSCR4,FAM13B,GRIPAP1,ARFGEF1,MTMR9,LUC7L,SPOPL,RAPGEF5,PTBP3,WDR6,BRD8,SNX30,ERCC8,TMCC1,SEMA4G,UBE2V1,USP16,MAPKAPK5,BROX,AMY2B,APPL1,RBM33,PAG1,NOL8,COL4A5,FPGT,DSTYK,MPHOSPH10,SLC25A27,POLR1B,PDZD8,EXOC5,CLEC16A,ERICH1,GXYLT1,ZNF2,LNPK,MAP3K2,RPRD1A,GPATCH2,NHLRC2,RUFY3,TTC28,ZFYVE26,ANKRD42,NIPSNAP3B,KMT2E,CWC22,DCAF16,ACVR2B,PAQR3,ITPR2,MORC3,PEX1,ENAH,CHORDC1,S100PBP,TRIM3,KAT6B,FBXW8,INPP4B,TRIM23,DTWD1,TSC2,SLC25A30,PCNT,N4BP1,YEATS2,TAF1C,RBM14,RB1,IKZF4,TEFM,TCEANC2,PIP4K2B,NF1,C2orf69,SPIN4,ANKRD50,THAP9,THAP6,DHX15,E2F5,SENP7,AQR,CHFR,MTRF1,TAF2,TRIP11,TRPM7,PXK,TRAPPC8,ERV3-1,MKLN1,WDR41,PHIP,TBC1D32,DOCK9,KLC1,GPS2,LRRC58,DUS4L,PPP1R21,NOL12,CCDC93,LMBR1,MBD6,SNX1,TM2D1,ATAD1,HP1BP3,VPS13C,TAPT1,CBR4,ITPR1,USO1,DIDO1,FKTN,ALG9,DUSP28,PUM2,MARCHF5,DHX36,ZCCHC7,TTLL3,TUBE1,RXRB,YAP1,MTMR11,NUDT17,NEDD1,C2CD2,LRP5L,KATNIP,RCBTB2,SPG11,FBXO42,INTS4,PIP5K1A,STK38,FRMD4B,KRCC1,MGAT4A,PUM1,ADCY4,RB1CC1,IL6ST,CILK1,ZRANB1,PDE5A,DCP1A,GXYLT2,TANK,MKNK1,DMTF1,ZDHHC23,FAM193A,NSD3,LMBR1L,VPS39,STAT2,VMP1,GMFB,CENATAC,SAFB2,KAT6A,AFF4,LZTFL1,ARAP2,RNF38,PARG,ZBED5,INPP5B,SETD2,SIN3A,MEX3C,CREB1,SLC2A11,SUDS3,SPG7,DPY19L4,CAPN7,ADAM10,USP49,SMAD2,CLCN6,ADD3,IGIP,PDE7A,CLK2,MYEF2,RNF19A,RAPGEF6,ASH1L,POLG2,NFIA,PTAR1,CEP152,IFT81,MGRN1,KATNAL1,CPSF7,PARP4,CTC1,GABPB1,VPS36,ACYP1,INTS6,FBXO38,IFT172,HCFC2,RSRC2,SNX27,NAPB,USP46,NAA25,PRMT9,SLC30A4,SLC35A3,GTDC1,DOCK10,C9orf72,ZBED8,CHD9,RALGAPA2,TOPBP1,BACH1,PIGN,AGER,AUTS2,SBNO1,C1orf52,POGLUT1,MLLT3,ABHD16A,RNF111,PAN2,STAG2,PDK1,PKN2,SLC30A6,NRDE2,STYX,METTL4,MTMR4,ATXN2L,DNASE1,SDE2,HDAC8,ANKRD13C,CCNT1,TTC3,STXBP5,ATF7IP,BRD4,SHOC2,MEF2D,MOSPD2,RSPH3,CD2AP,RAB28,FLVCR1,MBOAT1,DPY19L3,SMG7,SH2B1,LCORL,CSNK1G1,CEP57,HOOK3,ARIH2,SPICE1,DIP2C,ARMCX4,SAMD8,DDX55,SHQ1,GLMN,THOC1,WDR59,OTUD7B,UBA6,ACAP2,NUMA1,TNKS2,SESN3,LANCL1,ODR4,IFT140,PPP3CB,OXR1,AP5M1,NUDT3,OPA1,BCOR,DENND11,LYSMD3,LTO1,ZSWIM3,ATP7A,APBB2,DZIP1L,MSH3,ALS2CL,NEK9,EP400,UACA,ANKDD1A,DDX6,TRMT2B,NFKBID,C17orf75,SESTD1,NRBP2,SLX4,MECP2,NBPF11,DYNLT2,SEC31A,ACIN1,TNRC18,TAOK2,USP6NL,MBLAC2,GTF2A1,INPP5E,NUBPL,PITPNB,BOD1L1,PHF11,RAB33B,MYO5A,CHD2,LONRF2,MINDY3,PEX13,NBPF15,METTL14,ERN1,OTUD4,RABL3,HEMK1,UPF3B,HERC1,QKI,GNRH1,ZSWIM8,GDAP2,RAD50,SBF2,LPP,LRBA,ELP1,SYNGAP1,XAF1,CHD1,FBXO30,HECTD4,GNPTAB,EP400P1,HPS4,NBPF1,ARHGEF25,USP45,UBE3B,CARD8,GOPC,EVI5,NCOA2,OSGIN2,MED17,HECTD2,PLCG1,RCBTB1,PRKAB2,RALGAPA1,TMX3,BICRA,MDM1,MED13L,FCHO2,ASPM,SMG6,NEK4,CCDC174,SPIN3,TBRG1,ITSN1,SUV39H2,PPP1R12A,KLHDC1,RNPC3,C14orf28,TRPS1,PCDH18,DOP1A,BTBD19,KIAA2026,KMT2C,CCSAP,SEMA4C,STAU2,SIKE1,FBXO22,SCAF4,YTHDF3,CCNT2,RNF123,ZNF91,ZFP91,NBEAL1,TRAPPC11,ARMCX3,OPHN1,MARCHF1,ATP13A3,TUBGCP5,RBM25,PLD1,KLHL9,TBC1D4,TTC30A,UBR5,RESF1,ETNK1,ERMARD,EPC1,ZC3H13,PANK3,ZNF717,ATXN3,HEXIM2,MAP3K7,ARGLU1,YJEFN3,NEPRO,LIG4,POLQ,SRPK2,USP37,USP19,SGSM2,SMAD3,VMAC,TMEM161B,KRR1,SDCCAG8,HLCS,PYGO1,FAM149B1,DENND1B,ADAM17,HOOK2,PPP4R3A,TMTC3,RFX3,UBA3,TMEM68,VWA8,USP48,CYLD,PARP8,HELZ,MINDY1,SEL1L,LRRK1,ELF2,TMEM65,ZNF43,COA5,CDC14B,CACUL1,ARL5B,PMS2,TPP2,HDAC4,NR2C1,SOS1,JMY,AVL9,MED1,ZDHHC21,WDR37,GGA3,IQCN,CPEB2,TRIM66,TNPO1,MSL2,SLFN5,STAG1,TMEM267,ZCCHC8,ITFG2,KAT7,GNA13,AASDH,RABGAP1L,KIAA0895L,NDUFAF6,TRANK1,ATAD3B,MAML2,TUB,PHYKPL,SF3B1,POFUT2,ANKIB1,ZFP69,RECQL5,LDLRAD4,PIGM,ATP11B,MINDY2,CENPT,USP24,SOS2,POGZ,BRWD3,AKAP10,RBMX,RBM4B,ADAT2,WDSUB1,TANC2,MAP3K12,ORC4,FUBP1,SLC38A6,SLC44A5,KLF11,SMPD4,TRIM33,KIDINS220,DCAF1,DDX17,C12orf66,HAUS5,UBTD2,FMR1,DHX33,CTDSPL2,TMEM165,GNPDA2,SDR39U1,SMC6,CDAN1,EXOC6B,SLC24A1,GPALPP1,C16orf87,UBFD1,DLG1,ABCC5,ANO6,CERT1,CRYZL1,SUPT3H,STK36,GOLGA8B,SS18,ALPK1,ZFX,RMND5A,CBWD2,GOLGA8A,RABGAP1,SETD4,TP53BP2,TYW5,SEPTIN7,USP3,CEP162,DST,RBMS1,TRIP12,ZFP28,RAD18,ZNF17,SRCAP,CRBN,RNF169,ZNF84,CCP110,BICRAL,WDR26,ZDHHC6,PRPF40B,PCMTD1,JMJD1C,ARHGAP21,NGLY1,KBTBD2,ATF2,GSDMB,HELQ,CPLANE1,ERI2,OXNAD1,CSNK1G3,SH3D19,BRD1,SPATA13,IPP,CHM,SUGP2,SLC16A4,TTC39B,PHF10,UBE4A,WDCP,ZFP14,TUBGCP6,CCDC14,SMARCC2,MYO9A,RABGGTB,KLHL42,KNTC1,RANBP6,SAMD12,TAZ,SLC33A1,EXOC8,C19orf44,ATR,NIPA1,STRN3,TMEM106A,SCYL3,OGT,BLZF1,CNST,CLOCK,TUT4,DNAJC16,RBM15,CHKB,ANAPC10,BBIP1,OSGEP,CLK1,ATXN7,IGF1R,RFX7,MAP2K4,VTI1A,MBD5,RAF1,KPNA4,ZADH2,GON4L,CDC27,CERS6,LPCAT2,CASK,CHIC1,KLHL11,ORMDL1,ZNF45,YTHDC1,DDX51,TFCP2,GTF2H1,PASK,MTMR2,SMC1A,CCDC191,HIF1AN,TNKS,NR2C2,PPP4R2,TAF1A,SCRN3,ARHGAP29,GLS,MAN2A1,MBTD1,SEPSECS,MAN1A2,CEP192,ARHGEF11,VPS13A,ZFP3,LONRF1,RNF214,KBTBD6,PIK3R4,THADA,FAM172A,ILF3,CAND1,LENG8,PER2,SMURF2,FBXL3,NICN1,FGD4,FAM168B,PPWD1,RC3H2,SLC30A7,SASS6,CLASP1,NHLRC3,SH3YL1,ASTE1,ADGRA3,C22orf46,CAPN10,KRIT1,DCAF7,COG5,PROSER1,MAML3,VPS50,WAPL,SHLD2,ZZZ3,UGGT2,ZMYM5,C2CD3,PDCD6IP,PCID2,MBNL3,SETX,TRIM13,ARHGEF38,GRPEL2,PHC1,LRRFIP2,RAI1,SACS,BEND7,PABIR1,PUS7L,MED6,SLC25A24,MEIS1,CD47,GGNBP2,ERCC6L2,FBXO3,ATP11C,NEMF,RTTN,REV3L,WDR47,AFDN,PEX26,DOCK7,ENOSF1,MAU2,DZIP3,GANC,WDR7,AVIL,COA1,FNBP4,TMF1,SSH2,MLLT10,BHLHB9,DENND5B,TSTD2,MED23,CLEC2D,ZNF720,NCKAP1,MIER3,BTBD7,CLHC1,GPBP1,ARHGAP32,TTBK2,TP53BP1,CDK19,ZFHX3,ARID4A,PIGF,RNF115,SMAD4,AASDHPPT,TTC37,VCPIP1,TGOLN2,PPP3CA,CLIP4,WDR27,BBS7,PLXNB1,TFDP2,PNISR,GEN1,SFPQ,TMEM63A,AMT,ZNF10,FBXO9,FAM126B,ABCB10,RNF149,CEP120,CDC42BPA,B3GALNT2,OSBPL9,TGFBRAP1,ROCK1,WASHC2C,N4BP2,ARID2,STAM2,TTC5,MALT1,PLEKHH1,PICALM,DBR1,HEATR1,ZFAND4,PBRM1,CCNL2,ANKRD10,PPP4R3B,OBI1,CHTOP,CCDC50,PHF8,SSH1,OSBPL7,EEA1,KAT2A,UBE2W,PHTF2,CHD6,BMPR1A,CLDND1,PLA2G6,PCSK7,KIF27,FBXW7,SLC7A6OS,ZFP30,SPRTN,POLI,PRPF39,ITSN2,ZFAND1,TRIM45,SRRM2,PJA2,BTN2A1,IDS,SLC4A7,CMTR2,GORAB,UBR3,CEP44,DBT,PROSER3,ANKS3,GMCL1,PTPN23,C10orf88,ANKRA2,SOGA1,CELF1,CDC40,CCDC121,EPG5,PMS1,FAM160A2,ZNF83,DPH1,UHRF1BP1L,CDS2,RUSF1,SZT2,USP32,MYO18A,GIN1,STK4,CRAMP1,ARL6IP6,CCAR1,SACM1L,CENPJ,TMEM131,SLC10A7,KLHL8,PCBD2,MFAP3,APBB3,STX2,DYNC1LI2,RUFY2,WBP1,TEPSIN,RAD17,LRCH4,USP51,AGAP6,RYBP,MOB1A,ADAMTS10,RBM39,GPATCH8,PGS1,ARMCX6,MDC1,FAM120B,BLOC1S6,INTS3,PDS5A,NEK3,CSAD,PHLDB1,ATRX,RBM28,IKZF5,C2CD5,FRA10AC1,ZBTB5,PTEN,BCLAF1,OGA,RASAL2,NUP42,PAN3,MED28,FOXO1,RNF168,DDX59,ZC3H4,NUMB,ITPRIPL2,SCLT1,CALCOCO1,METTL25,DPP8,APAF1,TOGARAM1,FAM217B,LPGAT1,FAM76B,RNF217,EOGT,ADNP,ESYT2,MBD1,JARID2,ARID1B,ARRDC3,ERC1,TCF20,PRDM4,FTO,MRNIP,SS18L1,REL,ABL2,RSBN1L,RAD52,CEP43,DYRK1A,STRN,MARF1,INO80,CEP290,NEK1,COIL,WSB1,RSPRY1,USP21,ALS2,NSD2,TRIM52,NCBP3,ZC3HAV1L,TTC13,SALL2,BAHCC1,BRPF3,MTX3,YOD1,MCM3AP,TUT7,STRADA,NAF1,CDC14A,TJP1,LMBRD2,ARNT,CREBBP,HTT,CHML,IKZF2,C19orf71,TRMT61B,DOT1L,SDAD1,LDB1,UTP15,FRYL,KIF13A,USP31,DENND4B,NSUN3,TEP1,RPRD2,NOTCH2,MAN2C1,TAB3,TBC1D5,WHAMM,LIN7C,TET2,RABL2B,CFAP97,SPAG9,RNF141,XRN1,TTF2,ANAPC1,TAB2,DHX38,STX7,LYSMD4,CCDC88A,RPS6KA3,N4BP2L2,DCLRE1C,L3HYPDH,TXNDC16,FBXL4,UNKL,NEDD4,WWP1,GPCPD1,ZNF24,ASCC3,KMT2B,IRAK4,NBN,SERINC5,RHOT1,TP53INP1,KLHL28,KDM5B,RSF1,NUP58,THAP2,VIRMA,PIAS3,CLK4,ZUP1,USP30,ATXN7L3,PPP1R3D,GPRASP2,KDM5A,SERAC1,SIAH1,NOD1,ARIH1,CARNMT1,ARID4B,YTHDC2,FEM1C,METTL17,FAN1,TOP2B,HS2ST1,RABL2A,SLC25A29,TMEM39A,FOXJ3,BMI1,KDM7A,MIER1,NCOA6,TTC21B,CAMKMT,NPAT,ANKRD11,AP1G1,RRM2B,ARID1A,RAB3GAP2,NBR1,UTP23,SETD5,ZFP62,SOCS4,BRAF,OSBPL3,PTPN14,SLC35F5,SRSF2,CUL9,PRRC1,LRRC37B,SKIL,RSRC1,TAOK3,ANKRD28,FIGNL1,FUT10,R3HDM1,KCTD12,TLR1,SLC25A16,FAM193B,BRD2,LSM11,COG7,CCDC186,BTBD9,ZFC3H1,MIOS,NFYB,SP3,ARHGEF7,VCPKMT,HIPK1,SIK3,GALK2,PIK3C2A,PAFAH1B1,POLM,PALB2,EIF2AK2,ZNF69,FMNL3,SLF1,ITGB8,MARCHF6,CUL3,LTN1,ATM,SNX19,MED14,CDK13,TRAF6,ZC3H10,FEM1B,SLFN12,RELCH,RSBN1,RBM27,ATG12,PIBF1,AHI1,RORA,CNOT6L,ATP8B2,KDM5C,RNF144A,PGAP1,FAM111A,USP53,PARP11,GCFC2,ANKMY1,UBR1,PHF12,PDP2,SNRNP48,RC3H1,ZNF44,SLC12A6,SMG1,MTURN,XIAP,BCLAF3,DNAJB14,PPM1B,MCM9,IFT80,PHTF1,ABRAXAS1,ZCCHC14,ATP11A,UBN2,KIAA0586,ABHD18,SLC5A3,SMCHD1,PRR12,CREBRF,FOXN3,SMYD4,TARS3,PRKD3,ZNF41,ZC3H8,LATS1,AKT3,TRAPPC6B,ATE1,RAB2B,SLC38A9,PGBD1,APPL2,SGTB,TADA2A,DCAF6,KMT2D,SYNRG,USP40,TRAPPC13,GPR180,LTB4R,TUBGCP3,ROCK2,ANKRD26,GSAP,C2orf68,WAC,MRE11,RBM6,TRMT13,SREK1IP1,ARHGAP12,COBLL1,NT5C2,VPS54,LYRM7,CCDC142,SYNE2,CBX5,RYK,EPM2AIP1,TMEM144,MAML1,GTF3C4,ANKFY1,BORCS5,CROCC,CERS5,TPR,PIGB,CEPT1,DMXL2,NUCKS1,CUL4B,DET1,TBC1D15,ATAT1,INVS,CEP63,WDR11,EXOC2,KDM3B,ADPGK,CEP57L1,AKAP8,SEC24B,VPS13B,DPY19L2,KATNBL1,TAF4,TBP,SLX4IP,GABPA,GATAD1,TET3,BNIP2,PDPK1,PPM1A,CLK3,INCA1,UBXN7,LRCH3,CNOT4,SON,DHX57,MC1R,RLIM,ZMIZ1,PTCD3,MAGI1,NFRKB,CTPS2,BRWD1,CNOT1,NIN,DDI2,CHD3,CSTF3,RBMS3,NAPEPLD,RO60,TBCK,BBS10,SEPTIN2,SP4,RBM43,SETD6,TMTC4,ARL5A,LNPEP,KIAA0753,TMEM41B,VPS41,DDHD1,MAP4K5,DLG5,RBM41,CIAO1,FBXW11,CCNL1,TLK1,USP28,TMEM263,ASB7,NCOR1,RBM45,NFXL1,NFIB,RNFT1,ADCY6,DCUN1D1,WDR36,RANBP10,RPS6KC1,RMDN1,KANSL1,ZMYM3,DNMT3A,ABCD4,HAUS6,SYNJ1,PTPN2,TBC1D8,NEIL1,FAM161A,KDM2B,DDX5,STX17,PPP2R5E,LIPT1,CWF19L2,LYST,PNN,MICAL3,LUC7L2,IRF2BP2,GAPVD1,ARHGAP5,DGKD,BBS4,CASP8,SNX13,TRA2A,KMT2A,REV1,NEURL4,NRIP2,FAM135A,ETV3,IMMP1L,CFAP44,RBM19,HACE1,GABPB2,PIGA,ATXN7L1,MAPKBP1,ODF2L,C21orf91,TAF9B,ATN1,TBL1XR1,NRF1,WASHC4,ZXDC,NSRP1,FNDC3A,CCNC,PIGL,ZC3H7A,BAZ2A,BRIP1,DCAF8,ABCA5,MAP3K4,CEP350,PTCD2,CLASP2,SUPT7L,PSME4,RICTOR,SNX16,ARL6,OSGEPL1,CYTH1,RBM4,RAB11FIP2,SLC41A1,EXOG,NCOA5,GABRE,SCAI,GAN,DCAF5,PRIMPOL,TENT4B,TIRAP,RAB22A,WDR20,SCAPER,LRP6,EZH1,ELMOD3,FBXW2,GSTM2,SLC7A6,DYNC2I1,ASXL2,NINL,MAP4K3,C12orf76,PFAS,VPS52,FAM228B,ELK4,TIGD1,ASAP1,USF3,FBXO11,CWC25,BBS9,TTC32,ZMAT1,CSGALNACT2,RERE,TEX10,APPBP2,CYP2R1,POC1B,CNOT2,RBM48,PIKFYVE,AARSD1,RAB3GAP1,RBM5,ULK2,NKTR,PLA2R1,MTF1,FARP2,SLC30A9,CEP170,SLC35B3,SCYL2,PARP6,WDR33,OBSCN,NRIP1,C17orf80,TRA2B,PIAS2,TSC1,LRRC40,USPL1,TTC33,LACC1,PRPF4B,TRAPPC2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TECR,TMEM147,UBL7,PSMD2,CDC37,RNF181,NUDT22,ENDOG,LAMTOR2,TOMM40,RNF167,S100A11,AURKAIP1,CDC34,SLC25A11,CCT7,NAA38,CIB1,MPDU1,ANAPC11,BCKDK,COX5B,TADA3,ATP6V0B,TMEM53,CHCHD10,CHMP2A,NDUFS5,NME1,ZNF622,RUVBL2,SRA1,THAP7,SERF2,THAP4,ATP5ME,DCXR,YIF1A,ANTKMT,GPX4,ARHGDIA,ATP6V0D1,FAM174C,MRPS34,MICOS13,SLIRP,TLE5,CAPNS1,MYDGF,PSMC3,AP2M1,FKBP8,COPE,NDUFB10,BAD,PPP1CA,TK1,TAGLN2,PSMA7,UBALD2,MRPL41,PSENEN,PPP1R7,PARK7,SDF2L1,CALM3,CHMP1A,RBM42,WDR18,HMOX2,MRPL28,RNH1,EIF6,UQCRQ,AKR1A1,TXN2,ETHE1,KIAA2013,PSME2,GUK1,GSTO1,MRPL54,CINP,STUB1,PPP2R1A,TXNDC17,RABAC1,ECI1,VKORC1,NDUFS3,TSPO,PIH1D1,LMAN2,CIAO2B,NHP2,NANS,SEC13,ORMDL2,PGLS,TRAPPC1,HINT2,MRPL52,NECAP2,PSMD8,RHOC,NDUFS7,MIF,SNRPA,PSMC4,ATP5F1D,PSMB7,POLR2E,OTUB1,NTMT1,ATP5IF1,COX5A,YIF1B,EIF3K,ALKBH7,AGTRAP,MRPS15,NDUFB7,SLC39A3,PSMB6,MRPL34,PSMB3,KLF16,PEMT,KXD1,NDUFA6,SNU13,CDC20 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000271533 | ENST00000604070 | exon_skip_66482 | chr11:126274926-126275021 | -10.05 | -0.1340 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_111863 | chr14:23565815-23565892 | -11.70 | -0.2089 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_114365 | chr14:74290026-74290118 | -10.21 | -0.1230 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_302168 | chr19:10680345-10680443 | -9.89 | -0.2412 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_370518 | chr22:50247691-50247776 | -12.09 | -0.1982 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_382458 | chr3:38131595-38131638 | -8.29 | -0.2763 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_52671 | chr10:97461495-97461622 | -18.34 | -0.1554 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_470226 | chr7:103307595-103307708 | -13.27 | -0.1288 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000271533 | ENST00000604070 | exon_skip_327433 | chr2:86125794-86125880 | -7.95 | -0.1187 | PTCD3 | ENST00000254630 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000271533 | ENSG00000051341 | POLQ | BLCA,CESC,COAD,LUSC,UCS | COAD | | | ENSG00000271533 | ENSG00000062716 | VMP1 | BLCA,BRCA,CHOL,COAD,KIRC,LUAD,LUSC,PAAD,PRAD,READ,THCA | KIRC | | | ENSG00000271533 | ENSG00000066279 | ASPM | BLCA,CHOL,COAD,LUAD,TGCT | COAD | | | ENSG00000271533 | ENSG00000072609 | CHFR | BLCA,CHOL,KIRC,LGG,PAAD,PCPG,PRAD,THCA | KIRC | | | ENSG00000271533 | ENSG00000076641 | PAG1 | BLCA,BRCA,COAD,KIRC,THYM | KIRC | | | ENSG00000271533 | ENSG00000102287 | GABRE | BLCA,CESC,CHOL,COAD,LUSC,MESO,PAAD,PRAD,READ,SARC,TGCT,THCA,UCS | COAD | | | ENSG00000271533 | ENSG00000102595 | UGGT2 | BLCA,BRCA,CHOL,COAD,KIRC,LGG,LUAD,PCPG,READ,STAD,THCA,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000104290 | FZD3 | BLCA,BRCA,COAD,TGCT,THCA | COAD | | | ENSG00000271533 | ENSG00000105865 | DUS4L | BLCA,BRCA,CHOL,COAD,KIRC,LAML,READ,THCA | COAD | | | ENSG00000271533 | ENSG00000109046 | WSB1 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LAML,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000111300 | NAA25 | BLCA,BRCA,CHOL,COAD,KIRC,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,TGCT,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000113240 | CLK4 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LAML,LGG,OV,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000132953 | XPO4 | BLCA,BRCA,CHOL,COAD,KIRC,LAML,LUAD,MESO,PAAD,PRAD,READ,TGCT,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000136891 | TEX10 | BLCA,CHOL,COAD,KIRC,LAML,LGG,READ,THCA | COAD | | | ENSG00000271533 | ENSG00000146858 | ZC3HAV1L | BLCA,BRCA,CHOL,COAD,LAML,PAAD,SARC,TGCT,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000152256 | PDK1 | BLCA,BRCA,COAD,KIRC,LAML,LUAD | KIRC | | | ENSG00000271533 | ENSG00000152520 | PAN3 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000154429 | CCSAP | BLCA,CHOL,COAD,KIRC,LAML,LUAD,PRAD,TGCT,THYM | COAD | | | ENSG00000271533 | ENSG00000155100 | OTUD6B | BLCA,CHOL,COAD,KIRC,LAML,LGG,READ,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000164284 | GRPEL2 | BLCA,CHOL,COAD,KIRC,THCA | COAD | | | ENSG00000271533 | ENSG00000166012 | TAF1D | BLCA,BRCA,CHOL,COAD,KIRC,LAML,LGG,LUAD,LUSC,PAAD,PCPG,READ,STAD | COAD,KIRC | | | ENSG00000271533 | ENSG00000175309 | PHYKPL | BLCA,BRCA,CESC,COAD,ESCA,KIRC,LGG,OV,PAAD,SARC,STAD,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000175455 | CCDC14 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000184445 | KNTC1 | BLCA,CESC,CHOL,COAD,KIRC,LAML,LUAD,LUSC,MESO,PAAD,READ,UCS | COAD,KIRC | | | ENSG00000271533 | ENSG00000184465 | WDR27 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,KIRC,LAML,LGG,OV,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | COAD,KIRC | | | ENSG00000271533 | ENSG00000184786 | DYNLT2 | BLCA,CHOL,COAD,LAML,LGG,READ,TGCT,THCA,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000185158 | LRRC37B | BLCA,BRCA,CHOL,ESCA,KIRC,LAML,LGG,LUAD,LUSC,MESO,OV,PRAD,SARC,STAD,TGCT,THCA,THYM | KIRC | | | ENSG00000271533 | ENSG00000186088 | GSAP | BLCA,BRCA,CESC,COAD,ESCA,KIRC,PAAD,READ,STAD,THCA | KIRC | | | ENSG00000271533 | ENSG00000186166 | CENATAC | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,READ,SARC,STAD,THCA,UCS | KIRC | | | ENSG00000271533 | ENSG00000189007 | ADAT2 | BLCA,COAD,LAML,PAAD,READ,STAD,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000196236 | XPNPEP3 | BLCA,CHOL,COAD,ESCA,KIRC,LGG,LUAD,PRAD | COAD | | | ENSG00000271533 | ENSG00000213462 | ERV3-1 | BLCA,BRCA,CHOL,COAD,KIRC,LAML,SARC,TGCT,THYM | COAD | | | ENSG00000271533 | ENSG00000256525 | POLG2 | BLCA,CHOL,COAD,ESCA,KIRC,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,READ,SARC,STAD,TGCT,THCA,UCS | KIRC | | | ENSG00000271533 | ENSG00000069493 | CLEC2D | BRCA,KIRC,LGG,LUAD,LUSC,OV,PAAD,STAD | KIRC | | | ENSG00000271533 | ENSG00000117616 | RSRP1 | BRCA,CESC,COAD,ESCA,KIRC,LGG,LUAD,LUSC,OV,PAAD,PCPG,READ,SARC,STAD,TGCT,THCA,THYM | KIRC | | | ENSG00000271533 | ENSG00000125772 | GPCPD1 | BRCA,CHOL,COAD,ESCA,KIRC,LGG,LUAD,PAAD,PRAD,READ,SARC,STAD,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000132530 | XAF1 | BRCA,CESC,ESCA,KIRC,LUAD,PAAD,SARC,THYM | KIRC | | | ENSG00000271533 | ENSG00000135905 | DOCK10 | BRCA,KIRC,LUAD,STAD,THYM | KIRC | | | ENSG00000271533 | ENSG00000145416 | MARCHF1 | BRCA,KIRC,LGG,LUAD,PAAD,STAD,THYM | KIRC | | | ENSG00000271533 | ENSG00000175265 | GOLGA8A | BRCA,CESC,CHOL,COAD,ESCA,LGG,LUAD,LUSC,OV,PAAD,PCPG,READ,STAD,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000204271 | SPIN3 | BRCA,CESC,CHOL,COAD,ESCA,KIRC,LGG,LUAD,LUSC,MESO,OV,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000213066 | CEP43 | BRCA,COAD,ESCA,KIRC,LAML,READ,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000214021 | TTLL3 | BRCA,CESC,CHOL,ESCA,KIRC,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000215252 | GOLGA8B | BRCA,CHOL,COAD,ESCA,KIRC,LGG,LUAD,LUSC,OV,PAAD,PCPG,READ,SARC,STAD,THCA,THYM,UCS | COAD,KIRC | | | ENSG00000271533 | ENSG00000222009 | BTBD19 | BRCA,CHOL,COAD,OV,PAAD,PCPG,STAD,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000236699 | ARHGEF38 | BRCA,CHOL,COAD,LUAD,READ | COAD | | | ENSG00000271533 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,LAML,PAAD | KIRC | | | ENSG00000271533 | ENSG00000151849 | CENPJ | CESC,CHOL,COAD,KIRC,LGG,LUAD,LUSC,MESO,PAAD,PRAD,READ,THCA,UCS | COAD | | | ENSG00000271533 | ENSG00000266338 | NBPF15 | CESC,CHOL,KIRC,LGG,LUSC,MESO,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCS | KIRC | | | ENSG00000271533 | ENSG00000070882 | OSBPL3 | CHOL,COAD,KIRC,LAML,READ,THYM | COAD | | | ENSG00000271533 | ENSG00000070950 | RAD18 | CHOL,COAD,KIRC,LAML,LUAD | COAD | | | ENSG00000271533 | ENSG00000080839 | RBL1 | CHOL,COAD,LUAD,READ,TGCT | COAD | | | ENSG00000271533 | ENSG00000132436 | FIGNL1 | CHOL,COAD,KIRC,LAML,PAAD,READ,TGCT,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000136144 | RCBTB1 | CHOL,COAD,LAML,READ,SARC,THCA,THYM,UCS | COAD | | | ENSG00000271533 | ENSG00000139496 | NUP58 | CHOL,COAD,KIRC,LAML,LGG,LUAD,READ,TGCT,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000147874 | HAUS6 | CHOL,COAD,KIRC,LAML,READ | COAD | | | ENSG00000271533 | ENSG00000186767 | SPIN4 | CHOL,COAD,READ,TGCT,THCA,THYM | COAD | | | ENSG00000271533 | ENSG00000196950 | SLC39A10 | CHOL,COAD,LAML,LUAD,MESO,SARC,THYM | COAD | | | ENSG00000271533 | ENSG00000240038 | AMY2B | CHOL,KIRC,LGG,LUAD,OV,THCA,THYM | KIRC | | | ENSG00000271533 | ENSG00000103064 | SLC7A6 | COAD,KIRC,LUAD,PAAD,THCA | COAD | | | ENSG00000271533 | ENSG00000136492 | BRIP1 | COAD,LAML,LUAD,READ,TGCT | COAD | | | ENSG00000271533 | ENSG00000152749 | GPR180 | COAD,LAML,LUAD,TGCT,THYM | COAD | | | ENSG00000271533 | ENSG00000205268 | PDE7A | COAD,KIRC,LGG,PAAD,READ,STAD,TGCT,THCA | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000271533.1 | ENST00000604070.1 | 281 | 1438 | 2283 |
|
