 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CIRBP,NELFE,ZBTB3,MZF1,THAP3,SNRPA,NOL3,HSF4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | HSF4,MZF1,THAP3,CIRBP,THAP7,NOL3 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | ELF1 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_2022 | ENSG00000271420.1 | chr1 | 23378588 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 | | LncEditing_2025 | ENSG00000271420.1 | chr1 | 23378624 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 | | LncEditing_2026 | ENSG00000271420.1 | chr1 | 23378627 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 | | LncEditing_2027 | ENSG00000271420.1 | chr1 | 23378628 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 | | LncEditing_2032 | ENSG00000271420.1 | chr1 | 23378658 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 | | LncEditing_2045 | ENSG00000271420.1 | chr1 | 23378768 | - | lincRNA | RP5-1057J7.7 | ENST00000605350.1 | lincRNA | RP5-1057J7.7-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000271420 | LncEditing_2045 | KIRC | chr1_23378768_- | 3.020076e+00 | 1.571379e+00 | 1.060948e+00 | 8.670042e+00 | 4.319610e-18 | 9.357055e-18 | UP | | ENSG00000271420 | LncEditing_2022 | PRAD | chr1_23378588_- | 5.132753e+00 | 2.984265e+00 | 1.278189e+00 | 1.129637e+01 | 1.367568e-29 | 1.092207e-28 | UP | | ENSG00000271420 | LncEditing_2025 | PRAD | chr1_23378624_- | 5.300603e+00 | 2.760319e+00 | 1.062336e+00 | 1.318816e+01 | 1.026578e-39 | 2.426830e-38 | UP | | ENSG00000271420 | LncEditing_2026 | PRAD | chr1_23378627_- | 5.534233e+00 | 2.850256e+00 | 1.044613e+00 | 1.297400e+01 | 1.718218e-38 | 3.501611e-37 | UP | | ENSG00000271420 | LncEditing_2027 | PRAD | chr1_23378628_- | 5.563450e+00 | 2.835822e+00 | 1.028581e+00 | 1.311192e+01 | 2.813684e-39 | 6.395720e-38 | UP | | ENSG00000271420 | LncEditing_2032 | PRAD | chr1_23378658_- | 5.511683e+00 | 3.206485e+00 | 1.279590e+00 | 9.963390e+00 | 2.204156e-23 | 1.059070e-22 | UP | | ENSG00000271420 | LncEditing_2045 | PRAD | chr1_23378768_- | 4.899466e+00 | 3.435578e+00 | 1.952851e+00 | 6.665139e+00 | 2.644149e-11 | 5.351686e-11 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000271420 | LncEditing_2032 | -3.546571e-01 | 1.006900e-04 | 2.249792e-04 | | ENSG00000271420 | LncEditing_2045 | -3.008148e-01 | 2.018328e-03 | 2.647898e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000271420.1 | ENST00000605350.1 | 57 | 171 | 1 |
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