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lncRNA: ENSG00000271335

Summary for CCNY-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000271335
	Gene symbol	CCNY-AS1
	Gene name	CCNY antisense RNA 1
	HGNC	55252
	Entrez ID
	Gene type	antisense
	Synonyms	CCNY-AS1\|RP11-324I22.4\|10p11.21
	UniProtAcc

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Structure and expression level for CCNY-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000271335	6.522567e+01	1.029631e+00	3.039612e-01	3.387375e+00	7.056480e-04	2.540608e-03	UP	CHOL

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000271335	5.151200e-01	2.937037e-04	CHOL	6.622114e-04

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lncRNA-Protein interaction for CCNY-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000172530	BANP	7.67	91.6537	Q8N9N5	Epi	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000132780	NASP	101.88	91.4268	P49321	Epi	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000143442	POGZ	69.31	90.1615	Q7Z3K3	Epi	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000154832	CXXC1	54.32	91.6596	Q9P0U4	TF,Epi	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000120616	EPC1	50.05	95.6462	Q9H2F5	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000167967	E4F1	98.43	90.8885	Q66K89	TF	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000141258	SGSM2	75.55	91.0067	O43147	TF	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000198521	ZNF43	63.42	90.493	P17038	TF	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000196670	ZFP62	56.07	92.1652	Q8NB50	TF	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000154832	CXXC1	54.32	91.1824	Q9P0U4	TF,Epi	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000147789	ZNF7	49.46	91.391	P17097	TF	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000065029	ZNF76	12.44	92.0215	P36508	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000122965	RBM19	97.6	93.0973	Q9Y4C8	RBP	NA
ENSG00000271335	ENST00000603160	RP11-324I22.4	ENSG00000167978	SRRM2	27.79	97.7725	Q9UQ35	RBP	NA
ENSG00000271335	ENST00000605499	RP11-324I22.4	ENSG00000167978	SRRM2	15.41	95.7848	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for CCNY-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,GSDMB,VAMP1,EPOR,ABHD17A,TMEM234,CIRBP,MZF1,TTC31,MAPK8IP3,PPP2R3B,N4BP2L2,BCS1L,DMTF1,ACD,UNKL,TRAPPC12,ULK3,ZFP14,CENATAC,NPEPL1,SNRPA,SAFB2,MSANTD2,TUBGCP6,CCDC14,CLK4,ZBED5,EIF2B5,TTC14,SLC2A11,TAZ,SUGP1,SPG7,ECHDC2,OGT,RCCD1,CLK2,POLG2,DHX34,CHKB,METTL17,BBIP1,OSGEP,CTC1,CLK1,MRRF,GABPB1,NASP,RABL2A,RPAIN,OFD1,ACYP1,IFT172,CFAP298,XPNPEP3,INO80E,NAPB,C3orf62,ZFP62,ZBED8,ORMDL1,DDX51,AGER,SRSF2,C1orf52,CDK11A,LRRC37B,ATG4B,LMNTD2,CCDC191,NXF1,DCUN1D2,PAN2,FAM229A,SLC25A16,GIGYF1,HMGN3,FAM193B,NOL3,SLC25A28,SEC31B,CZIB,ZFC3H1,ARHGAP33,MBTD1,DNASE1,HEXD,HDAC8,SCNN1D,CCDC24,MRPS25,POLM,KIF12,ERCC5,HERC4,IQCC,FANCL,GLI4,LENG8,SH2B1,C1orf159,DDX56,PRR3,IP6K2,PPOX,PPWD1,SPAG8,EIF2B4,BIVM,DDX55,CAPN10,AP1G2,GLMN,BANP,THOC1,WDR59,TMEM175,ACBD6,INTS11,IFT140,TAMM41,GDPD3,DRC3,PCID2,ZNF44,RIMKLB,LTO1,PIDD1,LRRFIP2,METAP1D,BCLAF3,CWC15,IFT80,CEP83,UBN2,EXD3,LRIG2,PCED1A,NRBP2,IKBKB,DYNLT2,ACIN1,ZC3H8,ENOSF1,ANKRD49,PAXBP1,LEMD2,FNBP4,DENND6B,CCHCR1,PRMT7,INPP5E,PHF11,RSRP1,IL11RA,USP40,CLEC2D,FIZ1,TRPT1,LTB4R,TSNARE1,HEMK1,IFT20,PCSK4,C2orf68,MRE11,NDUFAF7,RBM6,TRMT13,ZNF862,IDUA,MYL5,EPM2AIP1,UCKL1,SYNGAP1,PSME3IP1,WDR27,UBXN11,EME2,KHDC4,CROCC,HPS4,PNISR,SFPQ,LRRC27,CARD8,ENKD1,ZNF10,ATAT1,ZBTB8OS,TRMU,BICRA,ATXN7L2,CHTF18,MYSM1,DPY19L2,TAF1D,KATNBL1,MKS1,C1orf35,CCDC174,MTIF3,CDK5RAP1,SPIN3,TBRG1,SLX4IP,ZCWPW1,KLHDC4,CCNL2,EFCAB7,FBXO46,DMPK,CLK3,RNPC3,ANKRD10,CHTOP,DDTL,SGSM3,COQ4,KYAT1,CCNT2,OSBPL7,STX10,KAT2A,ACBD4,CSTF3,RBM26,PLA2G6,ZBTB3,RHPN1,ENDOV,SETD6,POLI,PRPF39,ERMARD,KIAA0753,TRIM45,SRRM2,MIB2,EPC1,PHF1,HDAC10,HEXIM2,CEP44,SCRN2,HSF4,ARGLU1,ANKS3,NOXA1,YJEFN3,CCNL1,RGL3,ANKRD54,ANKRA2,SGSM2,VMAC,RBM45,HSPBAP1,YAE1,PMS1,EGFL8,PSMG4,TIA1,ZNF83,NEIL1,NAT9,LIPT1,CRAMP1,LUC7L,ZNF43,PNN,COA5,LUC7L2,BRD8,CCAR1,CENPJ,C14orf93,LRSAM1,DPH7,TRA2A,NSMCE4A,CEP131,DUS1L,PNPLA7,HINFP,NR2C1,APBB3,AMY2B,CNTROB,WBP1,RBM33,NOL8,TRIT1,IMMP1L,SRRT,AGAP6,GGA3,RBM19,GABPB2,ADAMTS10,TRIM66,RBM39,ODF2L,SLC26A6,SLC25A27,PGS1,ZCCHC8,NRF1,ZXDC,KAT8,PIGL,CSAD,LRRC37A3,KIAA0895L,NDUFAF6,ATAD3B,SAMD10,GPATCH2,MUTYH,DCAF8,EFCAB2,PHYKPL,TMEM259,FRA10AC1,RUFY3,LIN37,OGA,ZFP69,IFT27,RECQL5,PAN3,PHKG2,NARF,TBC1D17,SUPT7L,CENPT,OSGEPL1,MTG1,POGZ,GTPBP3,RBM4B,MRPS31,ANAPC2,TAF1C,TRAPPC14,AAAS,CAPN15,CXXC1,EZH1,MRNIP,THAP6,ELMOD3,DDX17,GSTM2,MTRF1,CEP43,FBXL12,PGGHG,FBXL6,WSB1,AUP1,C12orf76,POLL,FAM228B,WASHC1,USP21,TIGD1,GPS2,TRIM52,NOL12,CLASRP,DFFB,MBD6,STK36,ANKRD16,TTC32,ZMAT1,GOLGA8B,STRADA,ZNF18,EIF2D,GOLGA8A,CYP2R1,PAM16,SETD4,AARSD1,DUSP28,RBM5,NKTR,CEP162,YPEL3,TTLL3,ZNF84,RXRB,PARP6,WDR33,PCMTD1,PIAS2,TSC1,QRICH2,MAN2C1,DXO,HSPB11,ANKRD13D,CCDC57,RABL2B,TRAPPC2,LRRC45,SIRT7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CCNY-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000271335	ENST00000605499	exon_skip_41813	chr10:68337857-68337996	-18.10	-0.2034	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000271335	ENST00000605499	exon_skip_319223	chr19:43526200-43526349	-26.29	-0.1933	ETHE1	ENST00000292147	Frame-shift
ENSG00000271335	ENST00000605499	exon_skip_382458	chr3:38131595-38131638	-10.88	-0.2530	ACAA1	ENST00000333167	Frame-shift
ENSG00000271335	ENST00000605499	exon_skip_442657	chr5:74730259-74730398	-14.93	-0.1736	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000271335	ENST00000605499	exon_skip_470226	chr7:103307595-103307708	-10.88	-0.1624	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CCNY-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000271335	ENSG00000004777	ARHGAP33	CHOL,KIRC,KIRP,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000006025	OSBPL7	CHOL,GBM,KIRC,KIRP,LAML,LGG,UCS	CHOL
ENSG00000271335	ENSG00000046651	OFD1	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,THYM	CHOL
ENSG00000271335	ENSG00000076928	ARHGEF1	CHOL,KIRC,KIRP,LGG,THYM	CHOL
ENSG00000271335	ENSG00000092978	GPATCH2	CHOL,KIRC,KIRP,LAML,UCS	CHOL
ENSG00000271335	ENSG00000102977	ACD	CHOL,KIRC,KIRP,LGG,UCS	CHOL
ENSG00000271335	ENSG00000104936	DMPK	CHOL,GBM,KIRC,KIRP,LGG,THCA	CHOL
ENSG00000271335	ENSG00000119640	ACYP1	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,THYM	CHOL
ENSG00000271335	ENSG00000122417	ODF2L	CHOL,GBM,KIRC,KIRP,LAML,THYM	CHOL
ENSG00000271335	ENSG00000127415	IDUA	CHOL,GBM,KIRC,KIRP,LGG,THCA	CHOL
ENSG00000271335	ENSG00000127586	CHTF18	CHOL,GBM,KIRC,KIRP,LGG,UCS	CHOL
ENSG00000271335	ENSG00000130590	SAMD10	CHOL,KIRP,LAML,LGG,UCS	CHOL
ENSG00000271335	ENSG00000132680	KHDC4	CHOL,GBM,KIRC,KIRP,LAML,LGG,OV,UCEC,UCS	CHOL
ENSG00000271335	ENSG00000134253	TRIM45	CHOL,GBM,KIRP,LGG,THCA	CHOL
ENSG00000271335	ENSG00000136883	KIF12	CHOL,KIRC,KIRP,THCA,UCS	CHOL
ENSG00000271335	ENSG00000137343	ATAT1	CHOL,KIRC,KIRP,LAML,OV,UCS	CHOL
ENSG00000271335	ENSG00000138002	IFT172	CHOL,GBM,KIRC,KIRP,LGG,OV,THCA,UCS	CHOL
ENSG00000271335	ENSG00000138834	MAPK8IP3	CHOL,KIRC,KIRP,THCA,THYM	CHOL
ENSG00000271335	ENSG00000142330	CAPN10	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000143258	USP21	CHOL,GBM,KIRC,KIRP,LGG,THCA	CHOL
ENSG00000271335	ENSG00000144134	RABL2A	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000148814	LRRC27	CHOL,GBM,KIRP,LAML,LGG,THCA,UCS	CHOL
ENSG00000271335	ENSG00000149716	LTO1	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000158062	UBXN11	CHOL,KIRC,KIRP,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000158106	RHPN1	CHOL,GBM,KIRC,KIRP,LAML,THYM	CHOL
ENSG00000271335	ENSG00000160051	IQCC	CHOL,KIRC,KIRP,LAML,LGG	CHOL
ENSG00000271335	ENSG00000163482	STK36	CHOL,GBM,KIRC,KIRP,LGG,OV,THCA,UCS	CHOL
ENSG00000271335	ENSG00000166012	TAF1D	CHOL,KIRC,KIRP,LGG,UCS	CHOL
ENSG00000271335	ENSG00000167615	LENG8	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA	CHOL
ENSG00000271335	ENSG00000168096	ANKS3	CHOL,GBM,KIRC,KIRP,LGG,THCA,UCS	CHOL
ENSG00000271335	ENSG00000171962	DRC3	CHOL,GBM,KIRC,KIRP,THCA	CHOL
ENSG00000271335	ENSG00000173681	BCLAF3	CHOL,GBM,KIRC,KIRP,LAML,THYM	CHOL
ENSG00000271335	ENSG00000185158	LRRC37B	CHOL,KIRC,KIRP,LAML,THYM	CHOL
ENSG00000271335	ENSG00000185917	SETD4	CHOL,GBM,KIRC,KIRP,LAML,LGG,THCA,UCEC,UCS	CHOL
ENSG00000271335	ENSG00000187535	IFT140	CHOL,GBM,LAML,LGG,THCA	CHOL
ENSG00000271335	ENSG00000197283	SYNGAP1	CHOL,KIRC,KIRP,LAML,OV,UCS	CHOL
ENSG00000271335	ENSG00000197774	EME2	CHOL,GBM,KIRC,KIRP,LGG,THYM	CHOL
ENSG00000271335	ENSG00000198920	KIAA0753	CHOL,GBM,KIRC,KIRP,LAML,THCA,UCS	CHOL
ENSG00000271335	ENSG00000203965	EFCAB7	CHOL,KIRC,KIRP,LAML,THCA,THYM	CHOL
ENSG00000271335	ENSG00000204305	AGER	CHOL,GBM,KIRC,KIRP,LGG,OV,THYM,UCS	CHOL
ENSG00000271335	ENSG00000205517	RGL3	CHOL,KIRP,OV,THCA,UCS	CHOL
ENSG00000271335	ENSG00000205593	DENND6B	CHOL,GBM,KIRC,KIRP,UCS	CHOL
ENSG00000271335	ENSG00000213918	DNASE1	CHOL,GBM,LAML,LGG,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000214021	TTLL3	CHOL,GBM,KIRC,KIRP,LGG,OV,THYM,UCS	CHOL
ENSG00000271335	ENSG00000215440	NPEPL1	CHOL,KIRC,KIRP,LGG,THCA,THYM,UCS	CHOL
ENSG00000271335	ENSG00000221886	ZBED8	CHOL,KIRC,KIRP,LAML,LGG,THCA	CHOL
ENSG00000271335	ENSG00000230124	ACBD6	CHOL,KIRC,KIRP,LAML,THCA	CHOL
ENSG00000271335	ENSG00000250067	YJEFN3	CHOL,GBM,KIRC,KIRP,LAML,LGG,OV,THYM	CHOL
ENSG00000271335	ENSG00000273899	NOL12	CHOL,GBM,KIRC,KIRP,LGG,THCA,THYM	CHOL

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000271335.4	ENST00000603160.4	71	19	234
ENSG00000271335.4	ENST00000605499.1	59	691	870

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential