 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | EEF1AKMT3,RPAP2,PMM2,BICD2,ATL2,MFSD8,DNAJC27,WDFY1,ELOVL5,LIG3,UNK,TTC31,MID1,VAMP4,RHNO1,FKRP,GNAQ,TMEM184C,HLTF,RAB11FIP5,UTP18,PIGG,SENP1,GPATCH11,RNF6,SLC19A2,BCL7A,TULP3,WDR5B,ST7L,MSANTD2,COG6,CKAP4,TRIM5,C9orf85,FAM133B,UBE2N,IBTK,TBK1,TTC14,BRPF1,RAB10,SH3GLB1,AFAP1,PPIP5K2,STX18,DNTTIP2,SPTY2D1,USB1,FAM220A,XPO7,TOMM34,C20orf194,CBX3,NCBP1,PPIL4,RGP1,TRIM68,AP3M2,SMC2,RIC8B,UBE3A,TMEM30A,ESRP1,MORC2,THOC2,EDEM1,ZBTB6,OTULIN,GTF3C2,CTTN,ATP9A,PEAK1,SEPTIN10,FRK,ARHGAP11A,UBE2H,MSH6,HELLS,PURA,CD164,LMAN2L,ZNHIT6,HERPUD2,SEC63,NEMP1,EML4,MIS18BP1,MDN1,PTPRB,PAIP1,FAM53C,RAB5A,C22orf39,SEC23A,SRPK1,KCTD2,SECISBP2L,CPOX,VGLL4,PHC3,TES,AIDA,ZZEF1,DHX35,INTS2,SUPT20H,UBXN2A,SLU7,PRELID3B,ERGIC2,BUB3,RIOK1,SMARCAD1,STX6,KHNYN,MBTPS1,SSX2IP,CDK17,IPO9,ATG2B,HUWE1,ECD,AP4E1,TNPO2,DDX42,WDR35,DENR,CSNK2A2,MKRN2,SEC24C,LYSMD1,CDK7,ACACA,CRYBG3,CCDC34,ATPAF1,AKAP1,DNAJC24,PGGT1B,TMED2,RALBP1,SELENOI,SWT1,BRD3,TMEM64,ZMYM1,RWDD4,ARHGEF9,ZNF30,DHX32,AMMECR1L,TMEM168,IPO8,NOB1,FANCL,NCOA4,BRAP,UBE2G2,PAWR,MIB1,CEP68,DNMBP,NEMP2,POLR2C,RAP2C,VEZF1,MLLT6,PRPF40A,GSK3B,ZNF70,FASTKD1,INO80D,MYO10,ICE2,AGK,SMCR8,ENOPH1,BIVM,TMED4,CRLF3,KPNA1,STK3,MAPK9,GID8,DNAJB4,ZXDA,DNAJC21,PARD3,ZDHHC7,RIOX2,ZNF25,SCO1,TRNT1,PPP2CB,AIMP1,CHD8,EPN2,KIAA1143,DENND6A,RALGPS2,UBR4,TMED8,IFT74,OSBPL8,CBLB,ATXN10,XPO4,PGAM5,AP1AR,G3BP1,UFL1,SETD9,OCRL,RIMKLB,TAF8,NUDT12,HADHA,SLC25A46,PSMD14,ANAPC13,FZD3,DCTN1,IGSF3,UTP14C,GGCT,BBS2,RFWD3,CEP83,DDX20,LIN54,PLPBP,ISG20L2,LRIG2,SEC23IP,PATZ1,SNAP23,OSBP,HIP1,DTWD2,SLC38A1,BPNT2,SART3,DGKE,SRBD1,PAXBP1,CCDC125,C6orf120,KCTD18,PLEKHA8,RNF20,EYA3,ERO1B,GOLGA4,FLCN,NVL,TPM3,ATG14,GOLGB1,PWWP2A,UCHL5,MOB4,MYNN,RPE,ANKLE2,SLC39A10,HDAC2,TMCO3,SNX5,LDAH,SCAF11,ANKEF1,CCDC25,ADAM9,PUS10,TMEM167A,CNOT7,DIABLO,NDUFAF7,CCNG1,TOR1AIP2,TXNDC9,MANSC1,SLC23A2,PDS5B,EDEM3,SEC24A,SNX6,DCTN4,UEVLD,KIF3A,TYW1,SCAMP1,TIMM23B,ANKMY2,PRKAG1,EXOC7,MTRF1L,KHDC4,NCK1,PPP1R26,PLD6,ABLIM1,UNC119B,PIK3CA,PSMD12,AMZ2,LMLN,ATAD2B,SAR1B,ALG11,PREPL,ESCO1,PBX2,FGD6,ANGEL2,NAA15,POC5,RIT1,MYSM1,ITPRID2,METTL15,DARS1,DTD2,ELF1,C12orf29,SMARCE1,RBBP8,TAF1D,CEP95,SRP72,TTI1,DDX52,SLC11A2,TASP1,IFT88,ATF6B,STARD7,CRY1,SUGT1,GTF3C3,AFTPH,ZMAT3,PSMD10,DHFR2,XPC,MYCBP,PRR14L,FYTTD1,BARD1,ERLIN2,RPS6KB1,PTK2,TFAP4,N6AMT1,KANSL3,INIP,HECTD1,INTS7,LLPH,DHX37,TMEM209,AGO2,ARL13B,RBM26,XRCC2,GDE1,CAMK2G,PURB,MRPL35,SPATA6,CCNH,TERF2,CEBPZOS,TBC1D16,MLH3,KANSL1L,KIF21A,ANKRD46,WDFY3,ENTPD4,SMC5,GNA12,CHD4,BRCA2,ZNF106,VPS53,LCOR,PABIR2,CENPC,NOL9,HERC2,OTUD6B,TDG,WBP11,ABHD13,TUBGCP4,PARN,PRRC2A,C2orf49,POLK,MTHFD2,WIZ,PLEKHA3,DCAF12,PSPC1,PRKAA1,MAPK6,PRDM2,WRN,RBL1,SPATA5,R3HDM2,VEZT,BAZ1B,USP12,UCK2,TMEM87A,METTL6,IKBIP,AAK1,DSG2,TIA1,MOSMO,BAG4,FCF1,SPCS3,SASH1,ZNF8,APP,AMMECR1,SUSD1,BMPR2,SNRNP200,CDK2,PARP1,ERCC3,SLC49A4,C1orf198,FAM13B,DYM,GTF3C1,BRCA1,ARFGEF1,MTMR9,SPOPL,F11R,WDR6,MFHAS1,BRD8,GNS,ERCC8,TMCC1,UBE2V1,GSPT1,USP16,MAPKAPK5,ZMYND8,SLC9A7,IARS1,REEP3,BROX,ENTPD7,APPL1,MED24,RBM33,PAG1,NOL8,ADAL,BUB1,TMEM237,TIMM21,FPGT,DSTYK,TMEM97,MPHOSPH10,LEPROT,PDZD8,EXOC5,CAMK2D,CLEC16A,CSDE1,RFX5,GXYLT1,NUDT4,GSR,NAT10,LNPK,POLR1F,PLA2G12A,PIP4K2C,PPP1CC,MAP3K2,CSNK1A1,RPRD1A,GPATCH2,RPTOR,TOR1AIP1,LAMA5,CSE1L,NHLRC2,CAAP1,RUFY3,CKAP2,TTC28,BECN1,ANKRD42,LARP7,KMT2E,CWC22,C2orf42,DCAF16,ACVR2B,ITPR2,MORC3,PEX1,ENAH,CHORDC1,AGPAT5,KAT6B,FBXW8,SUPT16H,PDSS2,TRIM23,DTWD1,SLC25A30,N4BP1,YEATS2,RBM14,RB1,TMEM241,IKZF4,PIP4K2B,NF1,C2orf69,SPIN4,ANKRD50,THAP9,KIF14,THAP6,DHX15,SEC62,GGPS1,CSTF1,KIF20B,LMNB2,KLHL12,AQR,SENP7,GALNT11,STK24,PTPN21,TAF2,TRIP11,TRPM7,PXK,GTF2E1,MCM8,ACLY,TRAPPC8,KCTD20,ARSK,MKLN1,WDR41,PHIP,TMED7,DOCK9,LRRC58,DUS4L,CRIM1,PPP1R21,HADHB,RBM18,JAK1,CCDC93,DLAT,LMBR1,PATL1,TCEA1,UMPS,UBAP2,FAM98A,RASSF8,ATAD1,HP1BP3,VPS13C,TAPT1,CBR4,WASHC5,USO1,RAB2A,DIDO1,FKTN,ALG9,CEP41,XPNPEP1,EIF3E,BLMH,PUM2,MARCHF5,DHX36,ZCCHC7,IMPA1,TMBIM1,YAP1,COPS8,NEDD1,ARMC1,B4GALT6,C2CD2,KATNIP,SPG11,WASL,FBXO42,CLIP1,PDCD7,ITFG1,PIP5K1A,MAPK1,STK38,TSPYL4,KRCC1,FAR2,PUM1,USP22,SLC12A2,NUP155,TXNL4B,RB1CC1,IL6ST,CILK1,FASTKD3,ZRANB1,DYNC2LI1,MCEE,CAPZA1,CNOT9,DCP1A,UBQLN4,TANK,DMTF1,ZDHHC23,CCDC47,RFC1,FAM193A,NSD3,MAK16,JADE3,MORF4L2,HSDL1,LRRC1,USP36,SF3B3,VPS39,GMFB,WWC2,SAFB2,KAT6A,MREG,AFF4,LZTFL1,ARAP2,STRBP,RNF38,LBR,SLC18B1,PARG,KPNB1,ZBED5,HUS1,PNO1,HBS1L,SETD2,MYBBP1A,SIN3A,MEX3C,CREB1,SUDS3,MED20,ADSS2,DPY19L4,CAPN7,ADAM10,KIF16B,SMAD2,DNAJC2,OGFOD1,VPS35L,MYEF2,RAPGEF6,ASH1L,POLG2,PTAR1,NEBL,CEP152,IFT81,KATNAL1,NOP14,TRIM37,PARP4,AGBL5,GABPB1,CCDC149,ARMC10,VPS36,INTS6,FBXO38,TBCCD1,SYPL1,HCFC2,PRKACB,SLC4A1AP,SKP2,HEATR3,RSRC2,MRPS35,AK3,SNX27,GLG1,NAPB,USP46,EIF2A,NAA25,ERMP1,PRMT9,SLC30A4,ARL15,PRKX,SLC35A3,GTDC1,CEP104,ZBED8,CRK,CHD9,HACD2,RALGAPA2,LMAN1,BACH1,PIGN,DNAJA2,APIP,FGD1,PRPF38A,UBE2E1,SBNO1,C1orf52,POGLUT1,POGLUT3,TYW3,TOP1,MRPS27,CHST10,RNF111,UQCC1,C6orf62,STAG2,PDK1,PKN2,THEM4,SLC30A6,SNX4,METTL4,EIF3L,FITM2,DCLRE1A,ZDHHC3,MTMR4,HIPK2,ATXN2L,SDE2,HDAC8,ANKRD13C,TTC3,TDRP,STXBP5,ATF7IP,TMEM248,BRD4,NARS2,MOSPD2,RSPH3,CD2AP,SKA2,RAB28,TMEM254,FLVCR1,LUZP1,COPB1,DPY19L3,SMG7,LCORL,CSNK1G1,CEP57,HOOK3,ENPP4,METAP1,SPICE1,LNX2,AZI2,HAUS2,TRMT6,MORF4L1,RTL6,BZW1,EIF2AK3,KIAA1191,SAMD8,TMEM18,BRCC3,SMAP1,EIF4G2,DDX55,SPART,CHP1,SHQ1,PGRMC2,METTL21A,EXD2,OTUD7B,UBA6,ACAP2,WSB2,ADD1,ACBD6,TNKS2,SESN3,LANCL1,PPP3CB,NDC1,UNG,OXR1,AP5M1,NUDT3,TARS1,OPA1,FERMT1,BCOR,NAP1L2,ARL6IP1,DENND11,LYSMD3,APBB2,MSH3,ASCC1,NEK9,HMGB1,BRMS1L,EP400,C17orf75,PGM2,SESTD1,EVC,TMED10,TNFRSF10B,SP2,MECP2,UBAP2L,ATP6V1C1,RPRD1B,SEC31A,QRSL1,ACIN1,TMEM182,E2F7,TNRC18,THAP1,STRAP,TTC8,USP6NL,GOLT1B,GTF2A1,CEP85,ZNF28,NUBPL,PITPNB,BOD1L1,RAB33B,CHD2,TPGS2,PEX13,NBPF15,METTL14,UGDH,VPS4B,OTUD4,RABL3,UPF3B,TMPO,QKI,HERC1,RASSF3,POLR1A,BCL2L11,TRIM4,HERC3,GDAP2,RAD50,LAPTM4A,PIGK,SBF2,LPP,LRBA,TXNRD3,RRN3,ANP32E,CHD1,NAP1L4,FBXO30,HECTD4,GTPBP8,GNPTAB,EP400P1,MCPH1,NBPF1,XPO5,USP45,GLOD4,TAF6,TCEAL8,SINHCAF,GOPC,EVI5,NCOA2,OSGIN2,LRIF1,MED17,EIF3J,RCBTB1,PRKAB2,LATS2,TMX3,ZBTB4,MDM1,RAB4A,MED13L,FCHO2,ASPM,SMG6,NEK4,OSTM1,CCDC174,SPIN3,RUNX1,SUV39H2,FAT1,PPP1R12A,MIS18A,POFUT1,RNPC3,IDE,TRPS1,HS6ST1,CCDC77,DOP1A,KIAA2026,KMT2C,CCSAP,MRPS30,SEMA4C,STAU2,SCAF4,YTHDF3,CCNT2,SNX14,ORC3,HIF1A,NRAS,CENPQ,SAV1,SERP1,ZNF91,ZFP91,TRAPPC11,ARMCX3,ATG16L1,ATP13A3,RBM25,C1orf131,KLHL9,NLN,SMARCC1,TBC1D4,TTC30A,UBR5,RESF1,SERINC3,ETNK1,SERTAD2,DTL,E2F6,EPC1,ZC3H13,PANK3,SAP30L,TMEM69,ZNF717,SLC15A4,HEATR6,MAP3K7,TGIF2,ENTPD1,AAGAB,NEPRO,LIG4,POLQ,SRPK2,ANKRD27,IRF2,MFSD11,USP37,NMT1,CCDC90B,ORC5,TGS1,PPP4R1,TMEM161B,KRR1,SDCCAG8,EPM2A,HLCS,PYGO1,FAM149B1,DENND1B,AMBRA1,ADAM17,UBL3,PPP4R3A,MAIP1,TMTC3,RFX3,UBA3,TMEM245,CRCP,VSIG10,CAD,TMEM68,VWA8,C3orf38,USP48,FASTKD5,CYLD,SRGAP2,PARP8,HELZ,SEL1L,ELF2,NDUFA5,SRRD,TMEM65,ZNF43,PTPRK,COA5,CDC14B,STXBP3,CACUL1,COX10,ARL5B,SAR1A,RECQL,PMS2,LZIC,DPH5,TPP2,FZD6,NR2C1,ABHD17B,ADAT1,RCC2,SOS1,RTN4,AVL9,MED1,ZDHHC21,WDR37,SEC22C,KDSR,ATG5,AP3M1,CPEB2,PPP2R1B,KIF5B,KIAA0100,TNPO1,C18orf54,SLFN5,POT1,KLHL2,STAG1,TMEM267,COPG2,ITFG2,RNF4,GNA13,YIPF5,AASDH,RABGAP1L,MAML2,SLC25A43,SF3B1,ANKIB1,PRKRA,SETD7,PTGES3,PIGM,ATP11B,GOLGA1,PEX12,PLAA,MINDY2,CUL7,IAH1,MTPN,USP24,SOS2,IMMP2L,POGZ,CCDC43,TFB2M,BRWD3,FBXO45,AKAP10,NUDCD1,RBMX,RBM4B,WDSUB1,TANC2,ORC4,FUBP1,DDAH1,NMD3,SMPD4,CLNS1A,TRIM33,NBAS,ACVR1,KIDINS220,DCAF1,DDX17,C12orf66,MAP3K13,UBTD2,FMR1,SPRING1,CHMP2B,ZDHHC2,BBS12,DHX33,CTDSPL2,GNPDA2,TMEM165,LIN52,SMC6,EXOC6B,GPALPP1,C16orf87,UBFD1,DLG1,AP3S2,ANO6,CERT1,CRYZL1,LRP12,SUPT3H,ATP6V1E2,STK36,EPS8,GOLIM4,GRB2,TM9SF3,SS18,ALPK1,ZFX,VPS35,RMND5A,CBWD2,RABGAP1,TGIF1,SETD4,TP53BP2,TSNAX,TYW5,SEPTIN7,USP3,CEP162,DST,RBMS1,TRIP12,RAD18,ZNF17,SRCAP,RNF169,ZNF84,CCP110,BICRAL,WDR26,HACD4,HOOK1,ZDHHC6,SSR3,PRPF40B,JMJD1C,ARHGAP21,NGLY1,NAE1,VPS37A,ASB8,FUT11,KBTBD2,USP13,TRMT10A,ATF2,MRFAP1L1,C6orf89,REPS1,SEC22B,COPS2,CPLANE1,TOMM20,ERI2,LARS1,CSNK1G3,SH3D19,MDM2,GTPBP4,ATP6V1A,BRD1,SPATA13,TRIQK,RBM7,TWNK,PPID,CHM,SUGP2,NCAPD2,HSPA14,PHF10,RAB6A,NUP50,FBXL17,UBE4A,ZBED4,WDCP,EPCAM,CCT6A,SLC25A40,ZFP14,EGLN1,SNX12,CCDC14,SMARCC2,KCTD10,MYO9A,ITGB1,TVP23B,GNPAT,XXYLT1,RABGGTB,ACTR6,UBA2,ATP8B1,KLHL42,POGLUT2,RANBP6,SAMD12,SMIM15,TRIM59,SLC33A1,PSMD1,ATR,NIPA1,STRN3,DAXX,ARCN1,HSPA13,SCYL3,RAMAC,OGT,RCCD1,GZF1,CNST,CLOCK,TUT4,CEP89,ANAPC10,MOCS3,BBIP1,CLK1,ATXN7,MRRF,IGF1R,MCMBP,RFX7,ST13,MAP2K4,VTI1A,SLC7A1,MBD5,PLK2,PRKAR2A,RDH14,RNF11,ZADH2,GON4L,TRAM1,CDC27,CERS6,LPCAT2,CASK,NARS1,WWTR1,CHIC1,KLHL11,ORMDL1,ZNF45,YTHDC1,BRIX1,HOMER1,TMEM185B,DCTN5,PPP6C,LGALSL,TFCP2,GTF2H1,MLH1,MTMR2,SMC1A,CCDC191,MYH10,TAF5L,HIF1AN,TNKS,NR2C2,PPP4R2,TIMM10B,TAF1A,RMI1,NOP2,SCRN3,FAM114A2,PLS1,STAM,PFKM,ZMPSTE24,PIK3C2B,GLS,MAN2A1,MBTD1,SEPSECS,YES1,FBXO21,MAN1A2,MANEA,GAS8,DVL2,RAB3IP,CEP192,KAT14,BFAR,VPS13A,HSPH1,SF3A1,ECPAS,ZFP3,DNAJA3,JKAMP,LONRF1,PEX11B,KBTBD6,SNX25,SDHD,RARS2,UBE2Z,OARD1,DPM1,PIK3R4,THADA,FAM172A,ILF3,GFPT1,CAND1,SMURF2,FBXL3,PRR3,ACTR3,FGD4,FAM168B,PPWD1,RC3H2,DARS2,SLC30A7,SASS6,CLASP1,NHLRC3,SH3YL1,COG8,MNS1,CASP2,KRIT1,IPMK,SRP68,DCAF7,COG5,FAM136A,SERINC1,PROSER1,VPS50,WAPL,SHLD2,ZZZ3,UGGT2,ZMYM5,C2CD3,PDCD6IP,PCBP2,CROT,PCID2,SETX,VAPA,GRPEL2,TMCO1,LRRFIP2,RAI1,SACS,PABIR1,MTRR,SSRP1,ZCCHC9,PUS7L,SLC39A9,SLC25A24,CTBS,GGNBP2,ERCC6L2,RTF1,CABLES2,RASEF,FBXO3,ZBTB2,NEMF,RTTN,REV3L,IWS1,AFDN,PEX26,AGTPBP1,CEP70,MAU2,DZIP3,GANC,WDR7,COA1,FNBP4,SSH2,TMF1,NAP1L1,MLLT10,BHLHB9,TSTD2,AHR,MED23,UNC50,MTIF2,SUMO2,NSUN2,MRPS9,ZNF720,NCKAP1,MIER3,BTBD7,PAFAH1B2,PDHX,GPBP1,ARHGAP32,MFF,LSG1,ZFAND6,TP53BP1,CDK19,TMLHE,ZFHX3,ARID4A,PIGF,RNF115,SMAD4,AASDHPPT,ACP1,TTC37,VCPIP1,ESD,WASF2,TGOLN2,PPP3CA,CLIP4,RBBP9,RHOBTB3,FAM104A,BBS7,MESD,TFDP2,PNISR,GEN1,SFPQ,SEPTIN8,SMARCA1,DNAJC9,ARHGAP42,PCYOX1,MACIR,FBXO9,ABCB10,MORN2,AFG3L2,CEP120,RAI14,CDC42BPA,B3GALNT2,OSBPL9,TGFBRAP1,PKP4,ROCK1,N4BP2,CEP250,ARID2,SMARCAL1,STAM2,TTC5,PICALM,YEATS4,DBR1,CCDC6,HEATR1,WDR3,ZFAND4,EIPR1,PBRM1,RUNDC1,URB2,PHKB,TCAF1,ANKRD10,TENT4A,OBI1,NECAP1,USP10,MTMR12,CHTOP,TATDN1,CCDC50,PHF8,SSH1,RAB1A,ZFAND3,EEA1,UBE2W,CHD6,ANKS6,BMPR1A,CLDND1,DFFA,C5orf22,PDCD2,FBXW7,ZFP30,SPRTN,MRPL50,POLI,AGFG1,LIN9,CCT2,PRPF39,ITSN2,DLC1,ZFAND1,PJA2,SLC4A7,CMTR2,GORAB,CNOT11,UBR3,CEP44,GMCL1,SLC37A3,C10orf88,KPNA3,KRAS,TFAM,SOGA1,CELF1,CDC40,CCDC121,EPG5,CANX,PMS1,QRICH1,DNAAF5,STAU1,UHRF1BP1L,CDS2,ASPH,COPB2,RBBP5,USP32,SMARCD1,EIF5B,ABHD10,PRKDC,FECH,MARK2,GIN1,FASTKD2,STK4,SLC2A13,CRAMP1,ARL6IP6,NUDCD2,NKIRAS2,BCL2L13,CASP3,XRN2,CCAR1,SACM1L,PTP4A2,UXS1,RRAS2,DAG1,TMEM131,AREL1,MTREX,FBXO36,POLR3F,SLC10A7,EAF1,XPA,KLHL8,PCBD2,NANP,MFAP3,GTF2H3,STX2,RUFY2,CDYL,HCFC1,RAD17,TRIT1,PDCL,NUP133,PELI2,BET1,RYBP,CS,MOB1A,RBM39,HMGCR,GPATCH8,PGS1,MDC1,GNG12,FAM120B,SCRN1,CKAP5,BLOC1S6,FAM210A,INTS3,TRIM39,TWSG1,PDS5A,AZIN1,SLC5A6,EFCAB14,ATRX,FEZ2,NOL10,RBM28,OBSL1,IKZF5,C2CD5,ZBTB5,PTEN,BCLAF1,RASAL2,NUP42,PAN3,MED28,FOXO1,RNF168,NUMBL,RRP1B,DDX59,NUMB,SHTN1,ITPRIPL2,SEMA4F,NOLC1,OLA1,ANKRD52,SPPL3,DPP8,APAF1,PAK1IP1,MMGT1,TOGARAM1,FAM217B,LPGAT1,B4GALT4,FAM76B,IRS1,LRRFIP1,EOGT,RCN1,ADNP,ESYT2,MBD1,LMO7,JARID2,ARID1B,ARRDC3,ERC1,NDFIP2,GID4,SPPL2A,PRDM4,TCF20,SPTLC2,POLR2B,FBH1,REL,TMEM9B,RSBN1L,RAD52,CEP43,URB1,M6PR,DYRK1A,STRN,MARF1,INO80,CEP290,NEK1,CERS2,LEO1,RAD21,COIL,ARFGAP3,CPSF2,RSPRY1,USP21,PGM2L1,ALS2,NSD2,TRIM52,NCBP3,ATL3,WDR45B,TTC13,BRPF3,CUL4A,MTX3,SAP130,YOD1,MCM3AP,TMEM230,TUT7,STRADA,NPTN,NAF1,TM9SF2,RANBP9,TJP1,LMBRD2,ARNT,TOP2A,TPRKB,CREBBP,CHURC1,HTT,GOLPH3L,CHML,FAM3C,DNAJC11,SFMBT1,IKZF2,TRMT61B,SDAD1,PRPSAP1,MICU2,CCPG1,ARHGEF12,TUBD1,UTP15,LONP2,FRYL,TBC1D31,KIF13A,NGRN,NSUN3,NOTCH2,TAB3,SUCLA2,TBC1D5,WHAMM,LIN7C,TET2,RABL2B,CFAP97,RDX,SPAG9,GART,RNF141,CMTM4,XRN1,TTF2,GLYR1,RNF139,BRD7,AP3B1,ANAPC1,WDR89,IFT52,TAB2,STX7,CCDC88A,RPS6KA3,N4BP2L2,TXNDC16,FBXL4,RNF34,CACYBP,UNKL,NEDD4,WWP1,GPCPD1,ZNF24,ASCC3,BCCIP,PIGW,PIGX,DAP3,GSTCD,LRRC41,NBN,SERINC5,RHOT1,BZW2,KLHL28,KDM5B,NUP58,ABITRAM,VIRMA,PIAS3,CLK4,COMMD2,AMN1,ZUP1,USP30,ARL1,RPAP1,ATXN7L3,PPP1R3D,GPRASP2,STT3A,KDM5A,FBXO34,ARHGAP19,ANKS1A,TRIP4,LIX1L,ARIH1,MARS2,CARNMT1,PPTC7,ARID4B,FEM1C,GPATCH4,FAN1,TOP2B,RPAP3,UBLCP1,HS2ST1,RABL2A,TMEM41A,RBBP4,TMEM39A,FOXJ3,SLC35A5,KDM7A,SNX3,DERL2,CBX1,MIER1,NCOA6,TTC21B,CAMKMT,SEMA6A,NPAT,FANCF,AP1G1,ANKRD11,RRM2B,C4orf46,ARID1A,RAB3GAP2,NBR1,PRKAA2,JPT2,UTP23,NIP7,SETD5,ZFP62,BRAF,BAZ1A,NKAPD1,PTPN14,GUF1,SLC35F5,SRSF2,PRRC1,SSR1,PTPN13,DHX29,SKIL,UBE2O,RSRC1,NT5C3A,MARVELD2,NFYA,TAOK3,ANKRD28,FIGNL1,CTDSPL,TEAD2,FUT10,R3HDM1,KCTD12,SMURF1,BRD2,LSM11,CCDC186,BTBD9,ZFC3H1,MIOS,CLCN3,NFYB,CENPE,SP3,DNAJC3,ARHGEF7,CHSY1,HIPK1,GALK2,PIK3C2A,PAFAH1B1,ICMT,SEPHS1,SVIP,PALB2,EIF2AK2,ABCE1,TSR1,SLF1,MARCHF6,RFFL,EIF4ENIF1,CUL3,LTN1,ATM,ADO,UBN1,SNX19,EMC2,MED14,NUP54,IQGAP1,CDK13,NOA1,TRAF6,FEM1B,PAPSS1,DBF4,RELCH,RSBN1,NDRG3,ATG12,PIBF1,AHI1,NCSTN,LAMTOR3,CNOT6L,PGAP1,IMMT,FAM111A,USP53,PARP11,GCFC2,ASF1A,PHLDB2,PHF12,RPA1,ACTR8,KIF13B,PDP2,ZBED3,SNRNP48,RC3H1,GALNT7,AP2B1,SMG1,B4GALT5,KANSL2,XIAP,FAM189B,ELP4,BCLAF3,TMEM43,SLC35B4,HSPA9,MFSD9,CHUK,DNAJB14,PPM1B,MTOR,MCM9,IFT80,GMPS,PHTF1,ABRAXAS1,ZCCHC14,PELI1,MYO5C,ATP11A,CDK5RAP2,UBN2,FMN1,KIAA0586,TSN,SATB2,RBM47,ABHD18,SLC5A3,SMCHD1,SMYD4,MTA3,KLF3,PRKD3,ZNF41,ZC3H8,LATS1,AKT3,TRAPPC6B,ATE1,RAB2B,KNOP1,SLC38A9,APPL2,EPS15,FNTA,HEATR5A,SGTB,TADA2A,KIAA1958,TGDS,DCAF6,KMT2D,SYNRG,COP1,GNB1,PNPO,CETN3,CENPO,USP40,GPR180,MCFD2,TRIM44,TUBGCP3,CBLL1,ZFP36L1,ROCK2,KIAA0319L,ANKRD26,PSMD5,SMAD7,BTBD10,WAC,MRE11,NOL4L,TRMT13,AKTIP,SREK1IP1,FXR2,NT5C2,TEAD3,AGPS,ARPP19,VPS54,LYRM7,CCDC142,PAXIP1,FLT1,SYNE2,CBX5,RYK,EPM2AIP1,NAA35,PGM3,TMEM144,FAM168A,PSME3IP1,MAML1,GTF3C4,MPPE1,ANKFY1,SPG21,TPR,DHRS11,NOC3L,PCGF6,CEPT1,DMXL2,NCBP2,NUCKS1,SRSF7,CUL4B,DET1,TBC1D15,ATAT1,SUMF1,TNPO3,INVS,EPRS1,ALG2,CEP63,TMEM17,EIF3A,XRCC5,GRSF1,WDR11,PARPBP,EXOC2,KDM3B,YTHDF1,AKAP8,UBTF,SEC24B,VPS13B,WDR12,TAF4,WARS2,GABPA,MANBA,DPY19L1,GATAD1,TET3,TTC30B,DCAKD,TTC19,BNIP2,PDPK1,CCDC115,PPM1A,INCA1,ATMIN,UBXN7,LRCH3,CNOT4,SON,DHX57,RLIM,C1orf174,CHST14,PTGFRN,PTCD3,MAGI1,GNL3L,RAD1,CTPS2,BRWD1,CNOT1,NIN,DDI2,CSTF3,ABCC4,NAPEPLD,PDIA6,RO60,TBCK,ACBD3,BBS10,SEPTIN2,SP4,RBM43,SETD6,TMTC4,NOTCH3,ARL5A,LNPEP,CDC23,HDHD2,KIAA0753,OSBPL11,TMEM41B,DCAF17,VPS41,LTV1,MAP4K5,PHAX,SBDS,DLG5,RBM41,CWC27,CIAO1,RNGTT,FBXW11,POLR2D,CCNL1,USP28,TMEM263,SUMO1,UBE2G1,ZDHHC20,NCOR1,MEAF6,RBM45,C5orf15,NFXL1,NFIB,RNFT1,DDX31,DCUN1D1,NUP98,WDR36,MED4,RANBP10,RPS6KC1,KANSL1,TBC1D20,ZMYM3,DNMT3A,HAUS6,PTPN2,SYNJ1,CLINT1,GOLPH3,PCYT1A,FAM161A,C12orf4,DDX5,G3BP2,STX17,SEC24D,MRPS10,PPP2R5E,CWF19L2,KITLG,CCND2,PNN,LUC7L2,IRF2BP2,GAPVD1,ARHGAP5,BBS4,SNX13,TRA2A,KMT2A,REV1,NEURL4,KDM1B,RAB5B,FAM135A,SEC14L1,ETV3,CFAP44,CAMKK2,CEBPZ,HACE1,GABPB2,METAP2,PIGA,TMEM167B,C21orf91,TAF9B,RHOQ,TBL1XR1,NRF1,WASHC4,ZXDC,NSRP1,SPTLC1,FNDC3A,CCNC,ZC3H7A,DUSP7,ARV1,BAZ2A,BRIP1,GEMIN5,DCAF8,BRI3BP,SPRYD7,ABCA5,PAK2,NDUFAF4,MAP3K4,CEP350,PTCD2,CLASP2,BCL2L2,ATP2B1,SUPT7L,PSME4,QSOX2,EXTL2,RICTOR,AP3S1,ARL6,OSGEPL1,RBM4,RAB11FIP2,IVNS1ABP,URI1,USP7,UBE2Q1,EXOG,KCTD9,SCAI,PAFAH2,GAN,ANKRD40,LSM12,PRIMPOL,GCN1,COPA,WDHD1,UBQLN1,TENT4B,RAB22A,SCAPER,WDR20,LRP6,EZH1,ELMOD3,POLR3A,SLC20A2,DYNC2I1,DNAJC7,ITGA2,LIAS,ASXL2,NINL,EIF2AK1,GCC1,PNPLA8,MAP4K3,COX15,CARMIL1,C12orf76,PFAS,VPS52,FAM228B,HEXIM1,ELK4,TIGD1,CNNM3,TWF1,ASAP1,PSME3,USF3,FBXO11,LPIN2,BBS9,TAX1BP1,ARSB,CSGALNACT2,ZW10,CMTM6,ZNF18,EIF2D,RERE,SGPP1,TEX10,ALDH18A1,APPBP2,TBC1D12,POC1B,CNOT2,C1orf109,PIKFYVE,AARSD1,SPAG16,RBM5,RAB3GAP1,ULK2,NKTR,PLA2R1,IPO5,ESRP2,MTF1,FARP2,SLC30A9,CEP170,SLC35B3,CUL2,ERO1A,SCYL2,WDR33,PEX5,PTPRA,PACC1,NRIP1,C17orf80,TRA2B,KLHL7,PIAS2,MRPS14,TSC1,LRRC40,USPL1,TTC33,CCDC112,LACC1,NELFA,PRPF4B,TRAPPC2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TBC1D17,DNAJC4,FIBP,TP53I13,REX1BD,GPR108,SMIM12,PPM1M,STARD10,HAGH,DDT,SLC27A5,FAAP20,NDUFA13,ENDOG,FBXL15,GSTZ1,MOB2,TMEM179B,FTL,AURKAIP1,RFXANK,BLOC1S1,CDC34,THOC6,PET100,XAB2,NAA38,CORO7,BCL7C,SURF1,TMEM53,BABAM1,CHCHD10,NDUFS5,EDF1,SELENOW,CLPP,EGLN2,CCDC159,YPEL3,POLD4,POLRMT,TMUB1,THAP7,GRK2,ATP5ME,C12orf57,C4orf48,DCXR,NOP53,GPX4,USE1,FAM174C,H2AJ,TMEM175,TMEM102,GAMT,PSMB10,MICOS13,NDUFA11,SCAND1,ZNRD2,VMO1,PFDN5,PNPLA6,TOLLIP,GCAT,FAM3A,SIVA1,FKBP8,CYBA,TIMM10,THOP1,ABTB1,UBXN1,RHOG,NDUFB10,BAD,METRNL,CRIP1,C8orf82,ARRB2,SELENOO,ERCC1,MRPL41,RNASEH2C,TEDC1,NDUFB1,CYBC1,FUOM,EML3,MVB12A,DPM3,NPRL2,HDAC10,TYMP,BLVRB,MRPL28,HMOX2,TYROBP,MCRIP1,ELOB,ZFAND2B,HSD17B10,TAF6L,AKR1A1,ETHE1,MPND,TEX264,PSME2,ARSA,ZNHIT2,LIN7B,ZYX,SGF29,PSME1,EIF3G,TMEM205,HRAS,MRPL54,GSTO1,SIPA1,MDP1,JOSD2,SURF2,PLD3,AP2S1,ECI1,RABAC1,GSDMD,DEDD2,NDUFB11,LAMTOR4,VEGFB,NOSIP,SIGIRR,CIAO2B,AIP,IRF3,PAF1,SELENOM,TRPT1,ORMDL2,ADCK5,CFL1,GRK6,POLR2I,HINT2,USF1,RHOC,NOC4L,RPL10,ELOF1,GMFG,CCDC85B,ATP5F1D,MYL6,C19orf53,UBA52,YIF1B,TARBP2,ALKBH7,LST1,LSM7,EPN1,MCOLN1,TMEM219,ARL2,NDUFB7,RIN3,TXNRD2,CD63,PCK2,ETFB,FKBP2,KLF16,CCS,NR1H3,OCEL1,CCDC130,NDUFA3,PEMT,PMM1,HCFC1R1,NDUFAF3,APOC1,DCAF15,MSRB1,TBCB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75660697-75660779 | 179.00 | -66.17 | 82 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661084-75661174 | 169.00 | -68.24 | 86 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75660888-75660966 | 166.00 | -55.82 | 74 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661308-75661377 | 163.00 | -61.27 | 72 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661482-75661562 | 161.00 | -56.42 | 81 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75660979-75661061 | 154.00 | -60.67 | 78 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661583-75661648 | 149.00 | -55.72 | 66 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75660625-75660697 | 148.00 | -50.53 | 68 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661871-75661945 | 147.00 | -56.85 | 72 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75662108-75662185 | 144.00 | -54.02 | 76 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661648-75661737 | 143.00 | -64.23 | 84 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661231-75661311 | 140.00 | -52.16 | 79 | NA | | ENSG00000270696 | hsa-mir-101-1 | ENST00000604845 | chr2:75661387-75661464 | 140.00 | -57.61 | 73 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75660582-75660666 | 170.00 | -57.41 | 79 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75661119-75661193 | 166.00 | -54.20 | 66 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75661915-75662001 | 161.00 | -52.90 | 82 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75660695-75660790 | 159.00 | -69.40 | 91 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75660503-75660583 | 158.00 | -56.63 | 79 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75660987-75661063 | 156.00 | -53.83 | 79 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75661565-75661651 | 150.00 | -50.43 | 75 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75661310-75661379 | 149.00 | -53.65 | 74 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75661464-75661550 | 141.00 | -52.42 | 81 | NA | | ENSG00000270696 | hsa-mir-101-2 | ENST00000604845 | chr2:75662018-75662089 | 141.00 | -50.51 | 73 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-2,COPS7B | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-2,STK25 | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-2,P3H4 | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-2,FAM136A | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-1,COPS7B | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-1,STK25 | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-1,FAM136A | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-1,MRPL53 | TGCT,CHOL,ACC,KIRP,LIHC | | ENSG00000270696 | RP11-342K6.1,hsa-mir-101-1,P3H4 | TGCT,CHOL,ACC,KIRP,LIHC |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000270696.1 | ENST00000604845.1 | 101 | 696 | 391 |
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