 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | BDH1,PPIP5K1,PABIR2,ITPR2,HMGCR | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000270504 | ENST00000603791 | exon_skip_494822 | chr9:2651414-2651498 | -11.41 | -0.2282 | VLDLR | ENST00000382100 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_33516 | chr1:156938417-156938513 | -17.81 | -0.1957 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_48327 | chr10:26771074-26771089 | -8.30 | -1.1857 | ABI1 | ENST00000376142 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_52231 | chr10:93392916-93392955 | -11.67 | -0.7780 | MYOF | ENST00000359263 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_287874 | chr17:29085603-29085648 | -7.49 | -0.2270 | MYO18A | ENST00000527372 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_382356 | chr3:37091466-37091538 | -10.64 | -0.2171 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_43507 | chr10:84499874-84499959 | -26.36 | -0.3101 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000270504 | ENST00000603791 | exon_skip_508298 | chr9:136445051-136445111 | -12.81 | -0.2847 | SEC16A | ENST00000313050 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_80777 | chr12:26960514-26960628 | -12.27 | -0.1105 | FGFR1OP2 | ENST00000229395 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000270504 | ENST00000603791 | exon_skip_325891 | chr2:62987930-62988038 | -13.82 | -0.1795 | EHBP1 | ENST00000263991 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_44998 | chr10:110132304-110132400 | -13.99 | -0.1999 | ADD3 | ENST00000356080 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_499771 | chr9:128592982-128593042 | -17.08 | -0.3713 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_146683 | chr16:85780378-85780473 | -17.60 | -0.1956 | EMC8 | ENST00000253457 | Frame-shift | | ENSG00000270504 | ENST00000603791 | exon_skip_384139 | chr3:49278813-49278902 | -14.07 | -0.1759 | USP4 | ENST00000265560 | Frame-shift | | ENSG00000270504 | ENST00000603791 | exon_skip_497023 | chr9:89339863-89339953 | -16.51 | -0.2064 | SECISBP2 | ENST00000375807 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_48713 | chr10:34336198-34336243 | -8.57 | -0.2597 | PARD3 | ENST00000374789 | In-frame | | ENSG00000270504 | ENST00000603791 | exon_skip_435063 | chr5:66075023-66075230 | -23.86 | -0.1297 | ERBIN | ENST00000284037 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000270504 | ENST00000603791 | HMGCR | ENSG00000113161 | ENST00000509085 | -0.1477 | 945 | - | GBM,KIRC,KIRP | | ENSG00000270504 | ENST00000603791 | HMGCR | ENSG00000113161 | ENST00000511986 | -0.1220 | 946 | - | GBM,KIRC,KIRP | | ENSG00000270504 | ENST00000603791 | ITPR2 | ENSG00000123104 | ENST00000242737 | -0.5147 | 888 | - | KIRC,KIRP | | ENSG00000270504 | ENST00000603791 | BDH1 | ENSG00000161267 | ENST00000441275 | -0.1024 | 698 | - | GBM,KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000270504.1 | ENST00000603791.1 | 93 | 264 | 545 |
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