 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,PMM2,VAMP1,MFSD8,GBF1,DNAJC27,LIG3,TTC31,MAPK8IP3,VAMP4,SLF2,GNAQ,TMEM184C,HLTF,PIGG,SENP1,GPATCH11,WDR5B,ST7L,MSANTD2,COG6,TRIM5,FAM133B,IBTK,TBK1,TTC14,BRPF1,CCNK,PPIP5K2,MAP3K5,SPTY2D1,C20orf194,SH3RF1,NCBP1,FAM219B,AP3M2,GRB10,UBE3A,RIC8B,TMEM30A,THOC2,ZBTB6,EDEM1,OTULIN,GTF3C2,OFD1,ATP9A,PEAK1,FRK,UBE2H,PURA,XPNPEP3,ZNHIT6,HERPUD2,NEMP1,EML4,MIS18BP1,MDN1,PTPRB,RAB5A,FKBP15,MBD4,SECISBP2L,ORC2,NFKBIZ,VGLL4,PHC3,AIDA,ZZEF1,DHX35,INTS2,SUPT20H,DCUN1D2,SMARCAD1,GIGYF1,STX6,KHNYN,ZNF14,CDK17,IPO9,ATG2B,HUWE1,AP4E1,DDX42,WDR35,EIF4A1,SEC24C,ACACA,CRYBG3,DNAJC24,PGGT1B,SELENOI,SWT1,AMMECR1L,TMEM168,IPO8,FANCL,TTC17,BRAP,KLF7,CDC42SE1,UBE2G2,PAWR,MIB1,CEP68,NEMP2,VEZF1,MLLT6,PRPF40A,GSK3B,ZNF70,INO80D,ICE2,MYO10,AGK,SMCR8,CRLF3,TCAIM,KPNA1,ZXDA,DNAJC21,RIOX2,SCO1,ZNF25,TRNT1,CHD8,DENND6A,RALGPS2,UBR4,TMED8,NBEAL2,RELL1,OSBPL8,CBLB,XPO4,AP1AR,UFL1,RIMKLB,SLC25A46,NSD1,UTP14C,CEP83,LIN54,BMP2K,LRIG2,SEC23IP,IKBKB,DTWD2,SLC38A1,BPNT2,SART3,DGKE,SRBD1,ANKRD49,PAXBP1,KCTD18,PLEKHA8,RSRP1,EYA3,RNF31,GOLGA4,FLCN,ATG14,GOLGB1,FOXP1,PWWP2A,MYNN,ANKLE2,SLC39A10,LINS1,ZFR,SCAF11,ANKEF1,PUS10,TMEM167A,TOR1AIP2,ZNF862,SLC23A2,PDS5B,EDEM3,ATP6V0A2,SEC24A,DCTN4,UEVLD,KIF3A,TYW1,TIMM23B,EXOC7,KHDC4,MIDEAS,PIK3CA,LMLN,ATAD2B,ALG11,PREPL,PI4KA,ESCO1,MTMR10,KLF12,ANGEL2,NIPAL2,NAA15,RIT1,MYSM1,METTL15,ELF1,UVRAG,RNF44,TAF1D,CEP95,NUP153,TTI1,TASP1,GTF3C3,AFTPH,PRR14L,FAM160A1,BARD1,RPS6KB1,PTK2,N6AMT1,KANSL3,DENND4A,MPHOSPH9,POM121C,HECTD1,EDC4,TMEM209,AGO2,ARL13B,RBM26,XRCC2,PURB,SPATA6,MLH3,KANSL1L,WDFY3,ATP8A1,ENTPD4,SMC5,HEATR5B,ZNF106,LCOR,PABIR2,FBXL20,CENPC,NOL9,HERC2,OTUD6B,TDG,ABHD13,TUBGCP4,RUBCN,C2orf49,POLK,PLEKHA3,PRKAA1,PRDM2,WRN,SPATA5,BAZ1B,USP12,METTL6,AAK1,TIA1,MOSMO,SASH1,ZNF8,BMPR2,SNRNP200,ERCC3,POLG,FAM13B,ARFGEF1,MTMR9,SPOPL,LUC7L,RAPGEF5,PTBP3,SNX30,ERCC8,TMCC1,UBE2V1,USP16,MAPKAPK5,BROX,ENTPD7,APPL1,RBM33,PAG1,NOL8,FPGT,PLEKHA7,PDZD8,EXOC5,ERICH1,RFX5,GXYLT1,POLR1F,MAP3K2,CSNK1A1,GPATCH2,NHLRC2,RUFY3,ZFYVE26,BECN1,KMT2E,DCAF16,ACVR2B,ITPR2,MORC3,PEX1,CHORDC1,S100PBP,KLHL18,AGPAT5,KAT6B,FBXW8,RNF216,TRIM23,DTWD1,PCNT,N4BP1,YEATS2,USP54,RB1,TMEM241,IKZF4,NF1,ANKRD50,THAP9,THAP6,DHX15,E2F5,KIF20B,SENP7,AQR,CHFR,MTRF1,MACC1,GALNT11,PTPN21,TAF2,SEC16A,TRIP11,TRPM7,MCM8,TRAPPC8,KCTD20,ERV3-1,MKLN1,PHIP,DOCK9,KLC1,CLMN,LRRC58,DUS4L,CCDC93,LMBR1,TM2D1,UBAP2,HP1BP3,VPS13C,USO1,DIDO1,CYREN,FKTN,ALG9,CEP41,PUM2,DHX36,MKRN1,TTLL3,TUBE1,NEDD1,C2CD2,ARHGEF6,KATNIP,RCBTB2,SPG11,WASL,FBXO42,CLIP1,NCAPD3,INTS4,MAPK1,FRMD4B,ELMO2,PUM1,SLC12A2,NUP155,RB1CC1,CILK1,ZRANB1,DCP1A,TANK,DMTF1,MKNK1,ZDHHC23,RFC1,FAM193A,NSD3,VPS39,STAT2,VMP1,GMFB,WWC2,CENATAC,KAT6A,AFF4,LZTFL1,ARAP2,STRBP,RNF38,PARG,ZBED5,HUS1,INPP5B,SETD2,SIN3A,SLC37A1,MEX3C,CREB1,SLC2A11,SUDS3,DPY19L4,CAPN7,ADAM10,KIF16B,SMAD2,DNAJC2,CLCN6,PDE7A,MYEF2,RNF19A,ASH1L,POLG2,NFIA,PTAR1,CPSF7,TRIM37,PARP4,CTC1,GABPB1,VPS36,INTS6,FBXO38,TBCCD1,IFT172,HCFC2,SKP2,RSRC2,NAPB,USP46,NAA25,PRMT9,SLC35A3,CEP104,C9orf72,CHD9,RALGAPA2,BACH1,PIGN,AUTS2,SBNO1,ABHD16A,NXF1,RNF111,PAN2,STAG2,PDK1,PKN2,SLC30A6,STYX,METTL4,GRK3,MTMR4,HIPK2,ATXN2L,SDE2,ANKRD13C,CCNT1,TTC3,INSR,STXBP5,ATF7IP,MOSPD2,RSPH3,CD2AP,LUZP1,DENND5A,DPY19L3,SMG7,LCORL,CSNK1G1,CEP57,HOOK3,ARIH2,SPICE1,ARMCX4,EIF2AK3,SAMD8,DDX55,THOC1,WDR59,UBA6,ACAP2,NUMA1,TNKS2,LANCL1,ODR4,OXR1,AP5M1,OPA1,DENND11,LYSMD3,ATP7A,APBB2,MSH3,NEK9,EP400,UACA,DDX6,TRMT2B,SESTD1,SLX4,MECP2,NBPF11,RPRD1B,DYNLT2,SEC31A,AASS,ACIN1,TNRC18,USP6NL,GTF2A1,ZNF28,PITPNB,BOD1L1,CHD2,MINDY3,NBPF15,METTL14,VPS4B,ERN1,OTUD4,AHNAK,HERC1,QKI,POLR1A,ZSWIM8,GDAP2,RAD50,SBF2,LPP,LRBA,ELP1,CHD1,HECTD4,ZEB2,GNPTAB,HPS4,MCPH1,NBPF1,USP45,UBE3B,CARD8,GOPC,NCOA2,MED17,HECTD2,PLCG1,RCBTB1,PRKAB2,RALGAPA1,TMX3,MDM1,MED13L,FCHO2,POLH,SMG6,ASPM,NEK4,SPIN3,TBRG1,SUV39H2,PPP1R12A,KLHDC1,RNPC3,IDE,TRPS1,DOP1A,BTBD19,KIAA2026,KMT2C,CCSAP,STAU2,SIKE1,FBXO22,YTHDF3,CCNT2,SNX14,NRAS,ZNF91,ZFP91,TRAPPC11,OPHN1,ATP13A3,TUBGCP5,RBM25,SMARCC1,UBR5,ARHGEF5,RESF1,ETNK1,EPC1,ZC3H13,PANK3,ZNF717,HEATR6,MAP3K7,ARGLU1,NEPRO,LIG4,SRPK2,USP37,SGSM2,VMAC,TMEM161B,KRR1,FAM149B1,NSMAF,DENND1B,ADAM17,PPP4R3A,TMTC3,RFX3,VWA8,USP48,CYLD,TNS3,PARP8,HELZ,SEL1L,LRRK1,ELF2,TMEM65,ZNF43,PTPRK,CDC14B,CACUL1,ARL5B,PMS2,TPP2,ADAT1,SOS1,JMY,AVL9,MED1,ZDHHC21,WDR37,GGA3,AP3M1,CPEB2,TRIM66,KIF5B,KIAA0100,TNPO1,MSL2,POT1,STAG1,TMEM267,KAT7,GNA13,AASDH,RABGAP1L,KIAA0895L,TRANK1,MAML2,PHYKPL,SF3B1,ANKIB1,ATP11B,GOLGA1,MINDY2,MTPN,USP24,SOS2,POGZ,BRWD3,AKAP10,RBMX,RBM4B,WDSUB1,TANC2,FUBP1,SLC38A6,TRIM33,NBAS,KIDINS220,DCAF1,DDX17,C12orf66,FMR1,DHX33,EPB41,CTDSPL2,GNPDA2,SMC6,CDAN1,EXOC6B,SLC24A1,GPALPP1,DLG1,ABCC5,STK36,GOLGA8B,TM9SF3,ALPK1,ZFX,CBWD2,GOLGA8A,RABGAP1,SETD4,TYW5,SEPTIN7,USP3,CEP162,DST,RBMS1,TRIP12,ZFP28,RAD18,ZNF17,SRCAP,CRBN,RNF169,ZNF84,CCP110,BICRAL,WDR26,PCMTD1,JMJD1C,ARHGAP21,NGLY1,KBTBD2,ATF2,REPS1,CPLANE1,ERI2,LARS1,CSNK1G3,ATP6V1A,NBPF9,BRD1,SPATA13,IPP,CHM,SUGP2,PHF10,NUP50,UBE4A,ZBED4,SLC25A40,ZFP14,TUBGCP6,CCDC14,SMARCC2,MYO9A,KLHL42,KNTC1,RANBP6,SAMD12,SLC33A1,EXOC8,STRN3,TMEM106A,SCYL3,OGT,GZF1,BLZF1,CNST,CLOCK,TUT4,DNAJC16,RBM15,BBIP1,CLK1,ATXN7,MRRF,RFX7,VTI1A,MBD5,KPNA4,GON4L,CDC27,CERS6,CHIC1,KLHL11,ZNF45,YTHDC1,GTF2H1,CCDC191,HIF1AN,TNKS,NR2C2,TAF1A,SCRN3,CLTC,ARHGAP29,NCAPG2,PIK3C2B,GLS,MBTD1,SEPSECS,MAN1A2,CEP192,VPS13A,ZFP3,RNF214,PIK3R4,FAM172A,THADA,ILF3,CAND1,LENG8,PER2,SMURF2,INPPL1,PPWD1,RC3H2,DARS2,SLC30A7,SASS6,CLASP1,NHLRC3,ASTE1,CASP2,KRIT1,IPMK,DCAF7,COG5,PROSER1,MAML3,VPS50,WAPL,ZZZ3,UGGT2,ZMYM5,C2CD3,PDCD6IP,MBNL3,SETX,TRIM13,ARHGEF38,GRPEL2,PHC1,LRRFIP2,SACS,PUS7L,GGNBP2,ERCC6L2,RASEF,FBXO3,NEMF,RTTN,REV3L,AFDN,AGTPBP1,DOCK7,ENOSF1,MAU2,DZIP3,GANC,WDR7,COA1,FNBP4,TMF1,SSH2,MLLT10,TSTD2,AHR,MED23,NSUN2,ZNF720,NCKAP1,MIER3,BTBD7,GPBP1,ARHGAP32,LSG1,EHMT1,TTBK2,TP53BP1,CDK19,ZFHX3,ARID4A,PIGF,RNF115,SMAD4,TTC37,VCPIP1,TGOLN2,WDR27,FAM104A,BBS7,PNISR,GEN1,SFPQ,TMEM63A,ARHGAP42,ZNF10,FAM126B,ABCB10,RNF149,CEP120,CDC42BPA,B3GALNT2,OSBPL9,TGFBRAP1,ROCK1,WASHC2C,SHANK2,N4BP2,ARID2,NUP214,STAM2,TTC5,MALT1,PLEKHH1,PICALM,HEATR1,WDR3,PBRM1,URB2,TCAF1,ANKRD10,TENT4A,PPP4R3B,PHF8,SSH1,FYCO1,EEA1,PHTF2,CHD6,BMPR1A,PCSK7,C5orf22,FBXW7,ZFP30,SPRTN,POLI,AGFG1,PRPF39,ITSN2,SRRM2,BTN2A1,SLC4A7,CMTR2,GORAB,UBR3,CEP44,DBT,PROSER3,GMCL1,SLC37A3,C10orf88,ANKRA2,SOGA1,CELF1,CDC40,EPG5,PMS1,QRICH1,FAM160A2,ZNF83,STARD4,UHRF1BP1L,SZT2,USP32,MYO18A,PRKDC,FASTKD2,STK4,CRAMP1,ARHGAP31,CCAR1,SACM1L,CENPJ,TMEM131,AREL1,MTREX,SLC10A7,SORT1,PCBD2,MFAP3,STX2,DYNC1LI2,RUFY2,CDYL,HCFC1,RAD17,LRCH4,AGAP6,RBM39,GPATCH8,PGS1,MDC1,FAM120B,BLOC1S6,INTS3,PDS5A,EFCAB14,ATRX,RBM28,IKZF5,C2CD5,FRA10AC1,ZBTB5,PTEN,BCLAF1,PIK3CB,OGA,RASAL2,NUP42,PAN3,MED28,RNF168,MAP3K9,DDX59,NUMB,ITPRIPL2,SCLT1,ANKRD52,DPP8,APAF1,TOGARAM1,LPGAT1,FAM76B,LRRFIP1,RNF217,NOTCH1,ADNP,ESYT2,MBD1,JARID2,ARID1B,TCF20,MRNIP,POLR2B,SS18L1,ABL2,RSBN1L,RAD52,CEP43,URB1,DYRK1A,STRN,MARF1,INO80,CEP290,NEK1,WSB1,TRAK2,CPSF2,RSPRY1,PGM2L1,ALS2,NSD2,TRIM52,NCBP3,DEPDC5,TTC13,BRPF3,MTX3,SAP130,YOD1,MCM3AP,TUT7,STRADA,NAF1,TJP1,LMBRD2,ARNT,CREBBP,DOCK4,HTT,CHML,SFMBT1,IKZF2,DOT1L,SDAD1,ARHGEF12,UTP15,FRYL,KIF13A,USP31,DENND4B,NSUN3,TEP1,NOTCH2,MAN2C1,TAB3,TBC1D5,WHAMM,LIN7C,CCDC57,TET2,CFAP97,SPAG9,RNF141,TTF2,MYCBP2,ANAPC1,STX7,LYSMD4,CCDC88A,RPS6KA3,N4BP2L2,DCLRE1C,FBXL4,L3HYPDH,UNKL,NEDD4,WWP1,GPCPD1,ZNF24,ASCC3,IRAK4,NBN,RHOT1,TP53INP1,KLHL28,KDM5B,NUP58,RSF1,VIRMA,CLK4,ZUP1,KDM5A,SERAC1,NOD1,ARIH1,MARS2,ARID4B,FAN1,TOP2B,RABL2A,RBBP4,FOXJ3,KDM7A,MIER1,NCOA6,TTC21B,NPAT,ANKRD11,AP1G1,ARID1A,RAB3GAP2,UTP23,SETD5,ZFP62,SOCS4,BRAF,BAZ1A,OSBPL3,SLC35F5,CUL9,PRRC1,LRRC37B,DHX29,SKIL,TAOK3,ANKRD28,FIGNL1,R3HDM1,SMURF1,BRD2,LSM11,CCDC186,ZFC3H1,MIOS,CLCN3,SP3,ARHGEF7,HIPK1,GALK2,PIK3C2A,PAFAH1B1,DHX16,PALB2,EIF2AK2,ZNF69,ITGB8,MARCHF6,RFFL,EIF4ENIF1,CUL3,LTN1,ATM,UBN1,SNX19,MED14,NUP54,CDK13,TRAF6,FEM1B,CABIN1,RELCH,RSBN1,ATG12,PIBF1,AHI1,RORA,CNOT6L,PGAP1,USP53,FAM111A,PARP11,GCFC2,ANKMY1,UBR1,PHF12,ACTR8,EZH2,PDP2,SNRNP48,RC3H1,GALNT7,ZNF44,SLC12A6,SMG1,XIAP,BCLAF3,SLC35B4,MFSD9,CHUK,DNAJB14,MTOR,MCM9,IFT80,PELI1,MYO5C,ATP11A,UBN2,KIAA0586,ABHD18,SMCHD1,CREBRF,FOXN3,ANGEL1,SMYD4,KLF3,PRKD3,ZNF41,ZC3H8,LATS1,SLC35D1,WDR82,RAB2B,SLC38A9,APPL2,EPS15,HEATR5A,KIAA1958,DCAF6,KMT2D,SYNRG,USP40,TRAPPC13,TRIM44,TUBGCP3,CBLL1,ROCK2,KIAA0319L,ANKRD26,GSAP,DOCK8,WAC,MRE11,GK5,NOL4L,RBM6,TRMT13,ARHGAP12,NT5C2,AGPS,VPS54,LYRM7,CCDC142,PAXIP1,FLT1,SYNE2,KIAA1549,RYK,EPM2AIP1,NAA35,PGM3,TMEM144,FAM168A,MAML1,GTF3C4,ANKFY1,TPR,PIGB,CEPT1,DMXL2,CUL4B,TBC1D15,ATAT1,TNPO3,INVS,CEP63,EIF3A,WDR11,EXOC2,KDM3B,AKAP8,CEP57L1,SEC24B,VPS13B,KATNBL1,TAF4,SLX4IP,GABPA,GATAD1,TET3,BNIP2,PDPK1,PPM1A,CLK3,UBXN7,LRCH3,CNOT4,SON,MSL3,DHX57,RLIM,PTCD3,MAGI1,NFRKB,CTPS2,BRWD1,CNOT1,NIN,DDI2,NAPEPLD,RO60,TBCK,ACBD3,SP4,SETD6,TMTC4,ARL5A,LNPEP,CDC23,KIAA0753,VPS41,DDHD1,MAP4K5,DLG5,RBM41,FBXW11,CCNL1,TLK1,USP28,ASB7,NCOR1,MADD,RBM45,NFXL1,ADCY6,DCUN1D1,ABI1,NUP98,WDR36,RANBP10,RPS6KC1,KANSL1,ZNF3,TBC1D20,ZMYM3,DNMT3A,HAUS6,TBC1D8,SYNJ1,CLINT1,DDX5,G3BP2,STX17,PPP2R5E,LYST,PNN,MICAL3,LUC7L2,GAPVD1,ARHGAP5,DGKD,BBS4,CASP8,SNX13,KMT2A,REV1,NEURL4,NRIP2,FAM135A,ETV3,RBM19,HACE1,GABPB2,ATXN7L1,MAPKBP1,ODF2L,TAF9B,TRIM25,TBL1XR1,NRF1,MAPK14,WASHC4,ZXDC,NSRP1,FNDC3A,PIGL,ZC3H7A,BAZ2A,GEMIN5,DCAF8,ABCA5,SNX29,MAP3K4,CEP350,CLASP2,SUPT7L,PSME4,RICTOR,SNX16,ARL6,OSGEPL1,CYTH1,RBM4,RAB11FIP2,USP7,EXOG,DCAF5,ANKRD40,GCN1,TENT4B,TIRAP,RAB22A,WDR20,SCAPER,LRP6,EZH1,ELMOD3,FBXW2,SLC7A6,DYNC2I1,ASXL2,GCC1,PNPLA8,MAP4K3,SLC36A1,VPS52,ELK4,ASAP1,USF3,FBXO11,BBS9,ZMAT1,CSGALNACT2,TEX10,APPBP2,CYP2R1,POC1B,CNOT2,SHROOM4,ABCA1,RBM48,PIKFYVE,RBM5,NKTR,MTF1,FARP2,CEP170,ETS1,SCYL2,PARP6,WDR33,NRIP1,C17orf80,TRA2B,KLHL7,PIAS2,ASXL1,TSC1,USPL1,TTC33,LACC1,PRPF4B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,KIDINS220,E2F5,ZYG11B,ATXN1L,SOCS5,KDM5A,PAFAH1B1,SMARCC2,MECP2,CCSAP,VPRBP,OSGEPL1,ZMAT1,ENTPD1,WDR60,SMARCA5,PGS1,XPO4,ORC2,DGCR8,REST,USP36,ZNF3,RAD52,NBAS,METTL6,TUBGCP4,GORAB,FAN1,CEP162,BNIP2,ITCH,SMG1,ZNF70,ARL13B,XRCC2,RORA,CTC1,ABCB10,KIF16B,STX16,GEMIN5,ANKRD40,FER,AIDA,GCN1,NPEPPS,PDE7A,PGAP1,KLF8,HAUS6,CBL,UHRF1BP1L,TAF1B,USP32,SLC25A16,TIA1,SLK,NCBP3,MBNL1,DHX29,CTPS2,DIEXF,FAM208B,ZFR,MCTP2,ADAT1,ZNF14,SACM1L,SETD6,ATP2C1,UBXN7,TAF2,MYNN,COG5,NAPEPLD,KLHL7,PMS2,THAP9,KIAA1551,ANKRD13C,NLK,FBXL20,INSR,ITPRIPL2,TET2,ZUFSP,FAM133B,RPS6KC1,PIK3C3,RIF1,ENOSF1,C12orf66,ZC3H6,MINA,SLC4A7,PLEKHA5,FRA10AC1,HERC4,DDX59,AGO1,MAPK8IP3,ZC3H11A,CDC42SE1,UHRF1BP1,SEC31A,MFN1,YOD1,ACBD3,SIN3B,PCMTD1,TMEM131,HEATR6,PIK3R4,SKIV2L2,FAM122B,SSH1,YEATS2,PTPN12,C2CD5,ADCY6,LARS,COG6,USP28,CSNK1A1,TCP11L1,CYTH1,PAPD5,KIAA0907,OTUD6B,STRADA,XIAP,BROX,MPHOSPH9,TRAPPC10,DDX46,GTF2H1,MAU2,TLK1,SETD4,ABHD18,ANKRD26,FNDC3B,NFX1,PRKD3,CHFR,ADAM10,WNK1,EZH1,MAVS,FAM168A,SPICE1,OSBPL3,VPS50,GIT2,PIK3C2B,RALGAPA1,WSB1,AUTS2,NEU3,DHX15,SLC38A9,VPS13D,ANGEL2,CDC23,MOB1B,CDK13,MAML2,KLHL11,FAM111A,MFSD8,ELF1,TGFBRAP1,ZBED6,CEP120,S100PBP,MED1,NUPL2,RBMS2,BMP2K,TMEM241,CFLAR,SRPK2,TRIM25,FOXJ3,CPSF7,RLIM,FOXK1,TMX3,WDR43,SENP5,SLC35A3,HECA,ERCC3,PCBD2,UGGT2,RB1,C18orf25,NFIA,MED28,WDR91,ATAD5,PI4KA,ZBTB6,MDM4,NEK4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | FIBP,DDT,RNF181,LAMTOR2,FBXL15,CHID1,AURKAIP1,ALDOA,BLOC1S1,SLC25A11,NAA38,ARPC4,EDF1,CLPP,SERF2,COX4I1,UBL5,DCXR,MRPL43,YIF1A,GPX4,FAM174C,MRPS34,ATP5MC2,MYG1,CLTB,MICOS13,NDUFA11,TSR3,ZNRD2,COX6B1,CAPNS1,UQCRC1,PSMC3,TMEM208,FKBP8,RHOG,COPE,NDUFB10,PFN1,APRT,PPP4C,PSENEN,SRP14,DYNLL1,RBM42,MRPL28,NDUFC1,RNH1,NDUFB4,ELOB,TXN2,GUK1,PRDX5,GSTO1,CUTA,ECI1,NDUFS3,TSPO,CLTA,AIP,NR1H2,PSMD8,EMC7,NDUFS8,NDUFS7,ELOF1,ATP5F1D,COX7C,C19orf53,COX5A,UBA52,EIF3K,MRPS15,TMEM219,ARL2,NDUFB7,PSMB6,MRPL34,PSMB3,METTL26,HCFC1R1,NDUFA1,MSRB1,TBCB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000270157 | ENSG00000066279 | ASPM | BLCA,CHOL,COAD,PAAD,UCEC | UCEC | | | ENSG00000270157 | ENSG00000111816 | FRK | BLCA,BRCA,CHOL,COAD,LIHC,READ,UCEC | UCEC | | | ENSG00000270157 | ENSG00000116830 | TTF2 | BLCA,CHOL,COAD,KIRC,KIRP,LAML,READ,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000135953 | MFSD9 | BLCA,CHOL,LAML,LGG,PAAD,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000138018 | SELENOI | BLCA,CHOL,COAD,LAML,UCEC | UCEC | | | ENSG00000270157 | ENSG00000138182 | KIF20B | BLCA,CHOL,COAD,KIRC,PAAD,READ,UCEC | UCEC | | | ENSG00000270157 | ENSG00000152256 | PDK1 | BLCA,BRCA,COAD,KIRC,LAML,UCEC | UCEC | | | ENSG00000270157 | ENSG00000178295 | GEN1 | BLCA,BRCA,CHOL,COAD,GBM,UCEC | UCEC | | | ENSG00000270157 | ENSG00000184307 | ZDHHC23 | BLCA,CESC,COAD,LAML,LIHC,PAAD,READ,STAD,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000184445 | KNTC1 | BLCA,CHOL,COAD,KIRC,KIRP,LAML,PAAD,READ,UCEC | UCEC | | | ENSG00000270157 | ENSG00000196584 | XRCC2 | BLCA,BRCA,CESC,COAD,GBM,OV,UCEC | UCEC | | | ENSG00000270157 | ENSG00000213462 | ERV3-1 | BLCA,BRCA,CHOL,COAD,ESCA,KIRC,KIRP,LAML,LGG,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000006432 | MAP3K9 | BRCA,COAD,KIRP,OV,READ,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000183742 | MACC1 | BRCA,COAD,KIRC,KIRP,LAML,READ,UCEC | UCEC | | | ENSG00000270157 | ENSG00000198018 | ENTPD7 | BRCA,CHOL,COAD,LGG,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000205268 | PDE7A | BRCA,COAD,KIRC,PAAD,READ,STAD,UCEC | UCEC | | | ENSG00000270157 | ENSG00000125885 | MCM8 | CHOL,COAD,KIRP,PAAD,UCEC | UCEC | | | ENSG00000270157 | ENSG00000145555 | MYO10 | CHOL,GBM,READ,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000146918 | NCAPG2 | CHOL,GBM,LIHC,PAAD,UCEC | UCEC | | | ENSG00000270157 | ENSG00000163935 | SFMBT1 | CHOL,COAD,GBM,KIRC,LGG,PAAD,READ,STAD,THCA,UCEC | UCEC | | | ENSG00000270157 | ENSG00000165209 | STRBP | COAD,LAML,LIHC,PAAD,UCEC | UCEC | | | ENSG00000270157 | ENSG00000109586 | GALNT7 | KIRP,LAML,PAAD,READ,UCEC | UCEC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000270157.1 | ENST00000602609.1 | 111 | 357 | 692 |
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