 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FRMD4B,RPAP2,SPAG9,ARHGEF1,REPS1,TSPYL2,GSDMB,VAMP1,PUM1,CPLANE1,TTF2,EPOR,MYCBP2,ERI2,MFSD8,ABHD17A,DNAJC27,TMEM234,NBPF9,SPATA13,ANAPC1,MAST3,BRD1,CIRBP,RNF166,MZF1,DHX38,SIRT3,CNOT9,STX7,MAPK8IP3,LYSMD4,DCP1A,SUGP2,VAMP4,N4BP2L2,TANK,DCLRE1C,MKNK1,FBXL4,ANKRD44,SLF2,ZDHHC23,L3HYPDH,FAM193A,NSD3,UNKL,PHF10,PIGG,LMBR1L,ZNF24,GPCPD1,TRAPPC12,UBE4A,ULK3,VPS39,KMT2B,IRAK4,STAT2,VMP1,ZFP14,CENATAC,NPEPL1,WDR5B,TP53INP1,ST7L,SAFB2,KAT6A,KLHL28,KCTD13,KDM5B,MSANTD2,TUBGCP6,CCDC14,RSF1,SMARCC2,NUP58,CHKA,AFF4,MYO9A,ARAP2,PIAS3,CLK4,MAEA,ZUP1,FAM133B,ZBED5,EIF2B5,RPAP1,ATXN7L3,INPP5B,SETD2,RABGGTB,TTC14,BRPF1,KNTC1,SLC37A1,NOD1,RANBP6,CREB1,SLC2A11,HMGXB3,SUDS3,SPG7,TAZ,KDM5A,EXOC8,PPIP5K2,SRSF4,ADAM10,SIAH1,SMAD2,MLKL,SCYL3,CLCN6,ECHDC2,RCCD1,OGT,ARIH1,C20orf194,CPSF1,PDE7A,COX19,CLK2,MYEF2,FAM219B,RNF19A,RAPGEF6,ARID4B,ASH1L,POLG2,CLOCK,DHX34,NFIA,PTAR1,TUT4,DNAJC16,RBM15,CHKB,CEP152,IFT81,METTL17,FAN1,RIC8B,UBE3A,MGRN1,CPSF7,BBIP1,NPHP4,SLC12A9,ARAP3,OSGEP,THOC2,USF1,CTC1,CLK1,ATXN7,MRRF,GABPB1,NASP,RABL2A,RPAIN,MOV10,OFD1,CTTN,VPS36,PEAK1,INTS6,FBXO38,RFX7,SLC25A29,TMEM39A,FCHSD1,IQGAP3,IFT172,FOXJ3,VTI1A,CC2D1B,PURA,KDM7A,XPNPEP3,MBD5,MIER1,NCOA6,HGS,ANO8,RSRC2,TTC21B,NPAT,NAPB,TRMU,AP1G1,ANKRD11,ARID1A,C3orf62,NAA25,NEMP1,MAP3K14,SYVN1,USP35,EML4,SETD5,MIS18BP1,ZFP62,GON4L,SOCS4,MDN1,C9orf72,ANAPC5,CHIC1,ORMDL1,CHD9,BRAF,RALGAPA2,YTHDC1,BAZ1A,BACH1,DDX51,DONSON,AGER,MBD4,SECISBP2L,ORC2,OSBPL3,NFKBIZ,SPOUT1,SBNO1,SRSF2,C1orf52,PHC3,PRRC1,CUL9,CDK11A,POGLUT1,TECPR1,TFCP2,PASK,TSEN54,ZZEF1,DHX35,ABHD16A,ATG4B,SKIL,INTS2,SUPT20H,LMNTD2,CCDC191,ADHFE1,TAOK3,NXF1,DCUN1D2,EIF2B1,ANKRD28,TNKS,NR2C2,C6orf62,PAN2,FAM229A,SLFN13,SLC25A16,SMARCAD1,DUS3L,GIGYF1,KHNYN,FAM193B,PKN2,BRD2,PNKP,ABCA7,TMCO6,LSM11,ARFGAP2,COG7,SEC31B,ARHGAP29,CCDC186,BTBD9,CDK17,NRDE2,PIK3C2B,GLS,ATG2B,ZFC3H1,MTMR4,MIOS,KLHL17,ARHGAP33,MBTD1,DMAC2L,N4BP2L1,ATXN2L,SP3,DNASE1,SEPSECS,ARHGEF7,MAN1A2,AP4E1,TNPO2,GAS8,DVL2,DDX42,ANKRD13C,VCPKMT,HIPK1,CEP192,TTC3,SCNN1D,ARHGEF11,EIF4A1,PIK3C2A,RINT1,MRPS25,AHDC1,VPS13A,POLM,ZNF69,SHROOM1,GOLGA2,PGGT1B,STXBP5,ATF7IP,FMNL3,BRD4,SHOC2,ERCC5,ZFP3,SLF1,RCHY1,MARCHF6,SWT1,LTN1,HERC4,CD2AP,RNF214,IQCC,ZNF30,AMMECR1L,TMEM168,FAAP100,ZFYVE28,ATM,ARHGEF2,SLC26A11,SNX33,FLVCR1,SNX19,FANCL,ILF3,PLEKHG5,GLI4,NOL8,TTC17,CDK13,DPY19L3,SMG7,LENG8,PER2,SH2B1,SMURF2,CDC42SE1,KLF7,LCORL,PHKA2,PPP1R12C,C1orf159,DGKA,PRR3,TRAF6,NICN1,CSNK1G1,CEP57,UBE2G2,INPPL1,MIB1,HOOK3,IP6K2,PPOX,ARIH2,SPICE1,SH3D21,CABIN1,PLEKHG2,PPWD1,RC3H2,RELCH,RSBN1,MLLT6,SLC30A7,SASS6,ATG12,ATG2A,PIBF1,ZNF70,CLASP1,AHI1,INO80D,SAMD8,NHLRC3,ICE2,AGK,RORA,BIVM,CRLF3,CNOT6L,PHF7,DDX55,KPNA1,ARFGAP1,CASP2,CAPN10,KRIT1,AP1G2,GLMN,FAM111A,BANP,MICA,GCFC2,THOC1,PROSER1,ANKMY1,WDR59,ZNF25,OTUD7B,UBA6,VPS50,ACAP2,TMEM175,RIPK3,UBR1,WAPL,NUMA1,FANCA,PHF12,TNK2,INTS11,TNKS2,ARHGAP27,ZZZ3,DENND6A,RALGPS2,ODR4,UGGT2,ZMYM5,REXO1,C2CD3,UBR4,TAMM41,NBEAL2,CSNK1D,PDCD6IP,DRC3,SNRNP48,RC3H1,CBLB,XPO4,PCID2,ZNF44,SETX,AP1AR,CDK20,SLC12A6,TMEM138,TRIM13,SMG1,FGFR1OP2,UFL1,PKD1,RIMKLB,LTO1,TAF8,TRAF1,KANSL2,PIDD1,PHC1,RAI1,METAP1D,XIAP,LRRFIP2,SACS,NSD1,ATP7A,BCLAF3,SEMA4D,DNAJB14,PUS7L,MCM9,ALS2CL,IFT80,ZCCHC14,CEP83,DDX20,NEK9,GGNBP2,EP400,DOCK6,UBN2,ANKDD1A,EXD3,DDX6,KIAA0586,NFKBID,CYP3A5,LRIG2,PARP2,FBXO3,SESTD1,ABHD18,PCED1A,ABTB1,NEMF,RTTN,REV3L,NRBP2,SMCHD1,PRR12,SLX4,CREBRF,MECP2,AFDN,ANGEL1,SMYD4,IKBKB,NBPF11,DYNLT2,PRKD3,ACIN1,ZNF41,ZC3H8,LATS1,TNRC18,SART3,DGKE,ENOSF1,TRAPPC6B,MAU2,DZIP3,RAB2B,ANKRD49,PAXBP1,LEMD2,SLC38A9,APPL2,EPS15,GANC,CCDC125,COA1,MOGS,GALT,TADA2A,FNBP4,MMS19,DENND6B,PRMT7,INPP5E,KMT2D,SYNRG,BOD1L1,PLEKHA8,PHF11,RSRP1,IL11RA,TMF1,SSH2,EYA3,NEK8,TBCD,MLLT10,CHD2,RNF31,GOLGA4,FLCN,USP40,MED23,NVL,CLEC2D,ATG14,GOLGB1,PWWP2A,ZSWIM1,NBPF15,METTL14,LTB4R,ATP13A1,KIFC2,ERN1,TSNARE1,OTUD4,ANKLE2,TUBGCP3,NSUN2,ZNF720,HEMK1,MIER3,UPF3B,LINS1,HERC1,BTBD7,OGFR,PCSK4,NCKAP5L,ANKRD26,SCAF11,GSAP,CLHC1,POLR1A,STAT6,DDX11,PUS10,GPBP1,C2orf68,FBXL8,MRE11,GNRH1,ZSWIM8,ARHGAP32,GK5,NDUFAF7,NOL4L,RBM6,TOR1AIP2,TRMT13,GDAP2,ZNF862,TTBK2,PISD,PDS5B,TP53BP1,SBF1,IDUA,ZFHX3,EDEM3,CCDC82,ARHGAP12,ARID4A,SBF2,NT5C2,RNF115,ATP6V0A2,LRBA,ELP1,PAXIP1,NLRP1,VCPIP1,SYNE2,NOM1,GGT7,RYK,EPM2AIP1,UCKL1,SYNGAP1,XAF1,CHD1,MAML1,WDR27,FBXO30,UBXN11,HECTD4,EME2,ZEB2,YY1AP1,ANKFY1,HARS2,KHDC4,DCAF15,CROCC,PLXNB1,TPR,CERS5,EP400P1,MIDEAS,PPP1R26,HPS4,NBPF1,PNISR,GEN1,SFPQ,TPCN1,TMEM63A,FHOD1,ACAP3,AMT,CEPT1,USP45,UBE3B,CARD8,DMXL2,LMLN,ATAD2B,ZNF10,SRSF7,GOPC,LRRC14,NISCH,EVI5,FBXO9,CLCN7,FAM126B,NCOA2,IFFO1,ATAT1,MED17,INVS,HECTD2,BCL6,PLCG1,ESCO1,RALGAPA1,CEP120,PBX2,MYO9B,TMX3,KLF12,ANGEL2,B3GALNT2,BICRA,WDR11,MDM1,ATXN7L2,ROCK1,POC5,IQCE,CHTF18,ADPGK,MYSM1,FAM214A,N4BP2,KDM3B,MED13L,POLH,AKAP8,CEP57L1,METTL15,CEP250,ARID2,NUP214,FBXO41,SMG6,STAM2,MSTO1,VPS13B,UIMC1,UVRAG,NEK4,RNF44,MALT1,TAF1D,KATNBL1,MKS1,TAF4,PLEKHH1,CEP95,DZANK1,CDK5RAP1,SPIN3,TASP1,TBRG1,IFT88,ATF6B,TBP,SLX4IP,GABPA,HEATR1,EML3,SUGT1,RDH13,KLHDC4,ZFAND4,KLHDC1,AFTPH,PBRM1,CCNL2,GATAD1,TET3,EFCAB7,BNIP2,DMPK,PPM1A,CLK3,RNPC3,C14orf28,ANKRD10,BARD1,RPS6KB1,TENT4A,PPP4R3B,VPS9D1,INCA1,UBXN7,LRCH3,MNT,GABBR1,CNOT4,SON,CHTOP,DOP1A,BTBD19,N6AMT1,KIAA2026,ZDHHC8,MSL3,KANSL3,KMT2C,DDTL,SGSM3,SIKE1,STAU2,EHBP1L1,SCAF4,PHF8,DENND4A,MC1R,CCDC32,TYK2,RLIM,MPHOSPH9,CCNT2,HECTD1,OSBPL7,PTCD3,SP100,MAGI1,SCRIB,EDC4,KAT2A,UBE2W,RNF123,NFRKB,ZFP91,ZNF91,CHD6,ACBD4,AGO2,BRWD1,SLC17A9,U2AF2,NIN,DDI2,ANKS6,RBM26,TRAPPC11,PLA2G6,NAPEPLD,CSNK1E,PCSK7,CAMK2G,PURB,TUBGCP5,RBM25,ENTR1,FBXW7,RO60,TBCK,RHPN1,ZFP30,MLH3,SP4,CLDN15,SETD6,KANSL1L,ARL5A,POLI,UBR5,LNPEP,PRPF39,RESF1,ITSN2,ETNK1,ERMARD,KIAA0753,WDFY3,TRIM45,ENTPD4,NDOR1,SMC5,TMEM41B,SRRM2,DCAF17,HEATR5B,ZNF106,BTN2A1,GABRE,MIB2,WHRN,EPC1,TENM1,LCOR,ZC3H13,PANK3,PHF1,DDHD1,MTHFR,PABIR2,MAP4K5,CMTR2,GORAB,UBR3,HDAC10,FBXL20,HEXIM2,MAP3K7,CEP44,CENPC,HSF4,RBM41,PROSER3,NOL9,HERC2,OTUD6B,ARGLU1,NOXA1,TDG,YJEFN3,NEPRO,LIG4,MAPK7,TUBGCP4,CCNL1,RUBCN,RGL3,PTPN23,C10orf88,USP19,ANKRA2,SGSM2,PRRC2A,C2orf49,MKLN1,POLK,PLEKHA3,VMAC,NCOR1,KRI1,STK38,CELF1,TMEM161B,PRKAA1,ERCC6L2,EPG5,KRR1,MADD,RBM45,MICALL2,HSPBAP1,PRDM2,NFXL1,WRN,SPATA5,FAM149B1,R3HDM2,LBHD1,PMS1,QRICH1,OGG1,FAM160A2,USP12,RNFT1,DENND1B,AMBRA1,ZGPAT,ADCY6,AAK1,TIA1,HOOK2,RANBP10,PPP4R3A,MOSMO,ZNF83,HCN3,TMUB2,KANSL1,NSUN6,RFX3,ZNF8,ZMYM3,DNMT3A,ABCD4,TBC1D8,PTPN2,SYNJ1,DPH1,UHRF1BP1L,CAD,MEN1,ERCC3,DGKQ,VWA8,POLG,RUSF1,NEIL1,KDM2B,SZT2,POLE,FAM13B,DDX5,USP48,GRIPAP1,STX17,MARK2,PARP8,HELZ,NAT9,UBA7,LIPT1,STK4,ARFGEF1,ELF2,LYST,CRAMP1,LUC7L,SPOPL,ZNF43,PTBP3,WDR6,URGCP,PNN,COA5,CDC14B,LUC7L2,BRD8,CCAR1,GAPVD1,MAP2K7,SEMA4G,CACUL1,UBE2V1,ARHGAP5,DGKD,CENPJ,BBS4,MROH1,DPH7,TNS2,SNX13,TRA2A,NSMCE4A,USP16,MAPKAPK5,CEP131,KMT2A,TPP2,REV1,NEURL4,BROX,PNPLA7,HINFP,PCBD2,NR2C1,BRD9,CRTC2,AMY2B,APBB3,NRIP2,CNTROB,STX2,CYTH2,FAM135A,DYNC1LI2,SOS1,RUFY2,WBP1,JMY,RBM33,PAG1,HCFC1,RAD17,AVL9,TRIT1,NADSYN1,TONSL,ZDHHC21,WDR37,MOK,IMMP1L,CFAP44,LRCH4,SRRT,AGAP6,RBM19,WRAP73,DNAJC2,GABPB2,TAF6L,ATXN7L1,CPEB2,ADAMTS10,GTPBP2,TRIM66,MAPKBP1,RBM39,ODF2L,TADA1,SLC26A6,GPATCH8,SLC25A27,PGS1,MSL2,IRF3,MDC1,EXOC5,STAG1,ZCCHC8,ATN1,ERICH1,NRF1,FAM120B,RFX5,ITFG2,CKAP5,RRNAD1,KAT7,WASHC4,ZXDC,WDR91,NSRP1,INTS3,TRIM39,PIGL,NEK3,ZC3H7A,BIN3,GBA2,CSAD,PHLDB1,KIAA0895L,BAZ2A,NDUFAF6,ATRX,ATAD3B,MAP3K2,SAMD10,GPATCH2,MUTYH,RBM28,DCAF8,OBSL1,IKZF5,C2CD5,LAMA5,ABCA5,TMEM259,PHYKPL,SF3B1,POFUT2,NHLRC2,FRA10AC1,CACTIN,ANKIB1,ZBTB5,RUFY3,PTEN,LIN37,BCLAF1,MAP3K4,OGA,ZFP69,ZFYVE26,RASAL2,NUP42,IFT27,RECQL5,PAN3,CEP350,MED28,BCS1L,LARP7,DMTF1,KMT2E,CLASP2,DDX59,TBC1D17,DCAF16,GOLGA1,NUMB,ZC3H4,ACVR2B,SUPT7L,MORC3,RALGDS,QSOX2,DLG4,MINDY2,RICTOR,CENPT,OSGEPL1,CYTH1,CHORDC1,PEX1,S100PBP,RBM4,TRIM3,RAB11FIP2,SCLT1,CALCOCO1,ANKRD52,DPP8,MTG1,USP24,APAF1,WDR55,TOGARAM1,FAM76B,POGZ,ANAPC7,GTPBP3,YAF2,ARRDC2,BRWD3,AKAP10,RBMX,RBM4B,DTWD1,TSC2,RNF217,EXOG,PCNT,ANAPC2,YEATS2,C21orf58,TAF1C,RBM14,ADNP,ADAT2,MAP3K12,SCAI,MBD1,IKZF4,MYO19,TEFM,JARID2,TCEANC2,ARID1B,TRAPPC14,FUBP1,AAAS,DCAF5,NF1,PRIMPOL,CAPN15,TCF20,THAP9,SMPD4,TRIM33,CXXC1,RAB22A,SCAPER,WDR20,EZH1,MRNIP,THAP6,KIDINS220,ELMOD3,DDX17,E2F5,FBXW2,GSTM2,ABL2,MED15,HAUS5,SENP7,CHFR,AQR,MTRF1,RSBN1L,FMR1,RAD52,RRP8,CEP43,HDAC7,ARVCF,TSTD2,DYRK1A,ASXL2,STRN,CTDSPL2,MARF1,SEC16A,INO80,FBXL12,CEP290,SDR39U1,TRIP11,NEK1,TRPM7,PGGHG,MCM8,TELO2,SMC6,CDAN1,TRAPPC8,FBXL6,SLC24A1,WSB1,GPALPP1,MAP4K3,ERV3-1,STK19,PHIP,C12orf76,ANO9,POLL,VPS52,DLG1,USP21,ALS2,ABCC5,TIGD1,ELK4,KLC1,CNNM3,NSD2,GPS2,TRIM52,CLMN,NCBP3,NOL12,USF3,CRYZL1,SLC22A5,CLASRP,FBXO11,CCDC93,DFFB,TTC13,MBD6,CWC25,STK36,TTC32,MICAL1,BAHCC1,MTX3,ZMAT1,GOLGA8B,YOD1,MCM3AP,CSGALNACT2,UTP6,HP1BP3,ALPK1,ACP6,TUT7,STRADA,VPS13C,ZFX,NLRC3,CCDC88C,ZNF18,RERE,DIDO1,GOLGA8A,APPBP2,CYP2R1,PAM16,PPHLN1,FKTN,SETD4,ARNT,CNOT2,ALG9,SPIRE2,CREBBP,RFX1,RBM48,PSMC3IP,PIKFYVE,AARSD1,GMEB2,DUSP28,PUM2,TYW5,RBM5,USP3,DHX36,NKTR,CEP162,RBMS1,TRIP12,HERPUD2,IKZF2,ZFP28,CASZ1,MTF1,FARP2,C19orf71,ZNF17,SRCAP,DOT1L,CRBN,TTLL3,RNF169,TUBE1,SLC25A45,ZNF84,SCYL2,LDB1,BAZ2B,RXRB,CCP110,PARP6,ARHGEF12,BICRAL,TUBD1,OBSCN,WDR33,WDR26,MTMR11,NRIP1,PRPF40B,C2CD2,FRYL,PCMTD1,PIAS2,JMJD1C,KATNIP,LRP5L,ASXL1,TSC1,USP31,SH3GLB2,DENND4B,NSUN3,SPG11,TEP1,DENND11,RPRD2,FBXO42,MAN2C1,DXO,USPL1,LZTR1,USP20,ANKRD13D,WHAMM,MRPL38,LIG1,TBC1D5,NELFA,PRPF4B,INTS4,CCDC57,TET2,RABL2B,KBTBD2,TRAPPC2,PIP5K1A,SIRT7,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | NAXE,MRPL37,UQCRC1,PSMD8,VKORC1,ATP6V0D1,GSTO1,SLC25A11,RNF181,UQCRQ | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000270060 | ENST00000524412 | exon_skip_309204 | chr19:49181348-49181461 | -13.88 | -0.1297 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_340759 | chr2:85552415-85552567 | -15.73 | -0.1808 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_370518 | chr22:50247691-50247776 | -13.47 | -0.2208 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_382458 | chr3:38131595-38131638 | -8.44 | -0.3670 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_4796 | chr1:41007448-41007545 | -15.92 | -0.2527 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_133217 | chr16:8635038-8635079 | -8.17 | -0.3142 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_290158 | chr17:42953723-42953778 | -6.79 | -0.1656 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_302168 | chr19:10680345-10680443 | -14.15 | -0.1590 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000270060 | ENST00000524412 | exon_skip_470226 | chr7:103307595-103307708 | -11.42 | -0.1679 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_242285 | ENSG00000270060.1 | chr11 | 47168588 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 | | LncEditing_242286 | ENSG00000270060.1 | chr11 | 47168589 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 | | LncEditing_242297 | ENSG00000270060.1 | chr11 | 47168659 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 | | LncEditing_242318 | ENSG00000270060.1 | chr11 | 47168750 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 | | LncEditing_242323 | ENSG00000270060.1 | chr11 | 47168795 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 | | LncEditing_242325 | ENSG00000270060.1 | chr11 | 47168798 | - | sense_intronic | RP11-390K5.6 | ENST00000524412.1 | sense_intronic | RP11-390K5.6-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000270060 | LncEditing_242285 | KIRC | chr11_47168588_- | 2.643550e+00 | 1.149420e+00 | 8.322446e-01 | 1.094055e+01 | 7.374834e-28 | 3.000860e-27 | UP | | ENSG00000270060 | LncEditing_242286 | KIRC | chr11_47168589_- | 2.653023e+00 | 1.151126e+00 | 8.301568e-01 | 1.087300e+01 | 1.550260e-27 | 6.126827e-27 | UP | | ENSG00000270060 | LncEditing_242318 | KIRC | chr11_47168750_- | 2.516862e+00 | 1.166989e+00 | 9.018471e-01 | 9.795320e+00 | 1.179238e-22 | 3.269305e-22 | UP | | ENSG00000270060 | LncEditing_242323 | KIRC | chr11_47168795_- | 2.528055e+00 | 1.131983e+00 | 8.626823e-01 | 1.107983e+01 | 1.571787e-28 | 6.951415e-28 | UP | | ENSG00000270060 | LncEditing_242325 | KIRC | chr11_47168798_- | 2.542890e+00 | 1.093864e+00 | 8.216686e-01 | 1.220238e+01 | 3.018838e-34 | 2.057795e-33 | UP | | ENSG00000270060 | LncEditing_242286 | GBM | chr11_47168589_- | 2.154565e+00 | 9.372847e-01 | 8.327524e-01 | 5.931908e+00 | 2.994342e-09 | 9.281312e-09 | UP | | ENSG00000270060 | LncEditing_242297 | GBM | chr11_47168659_- | 1.816195e+00 | 8.346076e-01 | 8.914652e-01 | 7.863295e+00 | 3.741583e-15 | 6.879411e-14 | UP | | ENSG00000270060 | LncEditing_242323 | GBM | chr11_47168795_- | 1.940778e+00 | 9.292758e-01 | 9.412151e-01 | 5.749411e+00 | 8.955490e-09 | 2.481161e-08 | UP | | ENSG00000270060 | LncEditing_242325 | GBM | chr11_47168798_- | 1.944188e+00 | 9.146351e-01 | 9.192023e-01 | 5.951332e+00 | 2.659689e-09 | 8.405033e-09 | UP | | ENSG00000270060 | LncEditing_242297 | BLCA | chr11_47168659_- | 2.407278e+00 | 1.098147e+00 | 8.831332e-01 | 1.000621e+01 | 1.431383e-23 | 1.145106e-22 | UP | | ENSG00000270060 | LncEditing_242297 | LGG | chr11_47168659_- | 1.997929e+00 | 9.996028e-01 | 1.000923e+00 | 1.311569e+01 | 2.677201e-39 | 2.953288e-38 | UP | | ENSG00000270060 | LncEditing_242323 | LGG | chr11_47168795_- | 1.915746e+00 | 1.137152e+00 | 1.328936e+00 | 7.592313e+00 | 3.142445e-14 | 6.045140e-14 | UP | | ENSG00000270060 | LncEditing_242325 | LGG | chr11_47168798_- | 1.970589e+00 | 1.132681e+00 | 1.251744e+00 | 7.899967e+00 | 2.789783e-15 | 5.782724e-15 | UP | | ENSG00000270060 | LncEditing_242285 | LUSC | chr11_47168588_- | 2.809519e+00 | 1.190249e+00 | 8.070635e-01 | 9.201593e+00 | 3.526805e-20 | 9.492984e-20 | UP | | ENSG00000270060 | LncEditing_242286 | LUSC | chr11_47168589_- | 2.812082e+00 | 1.193553e+00 | 8.088151e-01 | 9.199048e+00 | 3.611355e-20 | 9.640229e-20 | UP | | ENSG00000270060 | LncEditing_242297 | LUSC | chr11_47168659_- | 2.441642e+00 | 1.072633e+00 | 8.426761e-01 | 1.157498e+01 | 5.518528e-31 | 4.428209e-30 | UP | | ENSG00000270060 | LncEditing_242318 | LUSC | chr11_47168750_- | 2.363456e+00 | 1.236469e+00 | 1.069894e+00 | 7.703731e+00 | 1.321501e-14 | 2.223150e-14 | UP | | ENSG00000270060 | LncEditing_242323 | LUSC | chr11_47168795_- | 2.299453e+00 | 1.220419e+00 | 1.094195e+00 | 7.944989e+00 | 1.942078e-15 | 3.390764e-15 | UP | | ENSG00000270060 | LncEditing_242325 | LUSC | chr11_47168798_- | 2.378110e+00 | 1.169403e+00 | 9.765209e-01 | 9.419315e+00 | 4.540410e-21 | 1.370610e-20 | UP | | ENSG00000270060 | LncEditing_242285 | LAML | chr11_47168588_- | 1.250726e+01 | 1.010016e+01 | 3.242681e+00 | 4.143426e+00 | 3.421559e-05 | 5.852667e-05 | UP | | ENSG00000270060 | LncEditing_242286 | LAML | chr11_47168589_- | 1.251333e+01 | 1.025012e+01 | 3.474336e+00 | 3.550661e+00 | 3.842651e-04 | 5.392811e-04 | UP | | ENSG00000270060 | LncEditing_242297 | LAML | chr11_47168659_- | 1.160623e+01 | 9.758193e+00 | 3.996586e+00 | 2.640036e+00 | 8.289712e-03 | 9.214936e-03 | UP | | ENSG00000270060 | LncEditing_242323 | LAML | chr11_47168795_- | 1.229275e+01 | 1.064657e+01 | 4.821149e+00 | 2.271529e+00 | 2.311498e-02 | 2.442002e-02 | UP | | ENSG00000270060 | LncEditing_242325 | LAML | chr11_47168798_- | 1.244869e+01 | 1.074297e+01 | 4.703657e+00 | 2.048957e+00 | 4.046631e-02 | 4.096384e-02 | UP | | ENSG00000270060 | LncEditing_242297 | KIRP | chr11_47168659_- | 2.021730e+00 | 8.982568e-01 | 8.544158e-01 | 7.982538e+00 | 1.433545e-15 | 6.567978e-15 | UP | | ENSG00000270060 | LncEditing_242297 | THCA | chr11_47168659_- | 1.736632e+00 | 9.281073e-01 | 1.106282e+00 | 9.782232e+00 | 1.342173e-22 | 6.212634e-22 | UP | | ENSG00000270060 | LncEditing_242297 | CHOL | chr11_47168659_- | 2.571193e+00 | 1.557809e+00 | 1.383281e+00 | 2.539051e+00 | 1.111536e-02 | 1.696905e-02 | UP | | ENSG00000270060 | LncEditing_242323 | CHOL | chr11_47168795_- | 2.926436e+00 | 1.439395e+00 | 9.768659e-01 | 3.781177e+00 | 1.560888e-04 | 1.567159e-03 | UP | | ENSG00000270060 | LncEditing_242325 | CHOL | chr11_47168798_- | 2.942241e+00 | 1.487988e+00 | 1.016722e+00 | 3.652893e+00 | 2.593020e-04 | 2.093869e-03 | UP | | ENSG00000270060 | LncEditing_242285 | THYM | chr11_47168588_- | 2.339665e+00 | 1.300595e+00 | 1.180457e+00 | 4.806252e+00 | 1.537858e-06 | 4.188539e-06 | UP | | ENSG00000270060 | LncEditing_242286 | THYM | chr11_47168589_- | 2.311304e+00 | 1.324168e+00 | 1.244368e+00 | 4.222905e+00 | 2.411737e-05 | 4.718994e-05 | UP | | ENSG00000270060 | LncEditing_242297 | THYM | chr11_47168659_- | 2.038327e+00 | 1.247605e+00 | 1.411983e+00 | 4.908547e+00 | 9.175375e-07 | 2.659387e-06 | UP | | ENSG00000270060 | LncEditing_242323 | THYM | chr11_47168795_- | 2.419170e+00 | 1.299119e+00 | 1.114854e+00 | 4.531627e+00 | 5.853120e-06 | 1.361541e-05 | UP | | ENSG00000270060 | LncEditing_242325 | THYM | chr11_47168798_- | 1.922310e+00 | 1.337015e+00 | 1.909031e+00 | 3.297148e+00 | 9.767198e-04 | 1.375019e-03 | UP | | ENSG00000270060 | LncEditing_242285 | OV | chr11_47168588_- | 1.957580e+00 | 8.443707e-01 | 8.243187e-01 | 1.069128e+01 | 1.118150e-26 | 9.220976e-26 | UP | | ENSG00000270060 | LncEditing_242297 | OV | chr11_47168659_- | 1.895725e+00 | 8.802389e-01 | 9.035199e-01 | 8.829525e+00 | 1.051216e-18 | 4.230166e-18 | UP | | ENSG00000270060 | LncEditing_242286 | TGCT | chr11_47168589_- | 2.199864e+00 | 1.177565e+00 | 1.109130e+00 | 4.673971e+00 | 2.954311e-06 | 4.833253e-06 | UP | | ENSG00000270060 | LncEditing_242297 | TGCT | chr11_47168659_- | 1.908767e+00 | 1.112533e+00 | 1.284039e+00 | 6.425339e+00 | 1.315760e-10 | 4.848161e-10 | UP | | ENSG00000270060 | LncEditing_242323 | TGCT | chr11_47168795_- | 1.938179e+00 | 1.155442e+00 | 1.340021e+00 | 4.936445e+00 | 7.955960e-07 | 1.396561e-06 | UP | | ENSG00000270060 | LncEditing_242325 | TGCT | chr11_47168798_- | 1.849774e+00 | 1.133533e+00 | 1.415384e+00 | 5.558221e+00 | 2.725384e-08 | 6.025309e-08 | UP | | ENSG00000270060 | LncEditing_242285 | LUAD | chr11_47168588_- | 3.154069e+00 | 1.547006e+00 | 9.730128e-01 | 9.913948e+00 | 3.620498e-23 | 1.493024e-22 | UP | | ENSG00000270060 | LncEditing_242286 | LUAD | chr11_47168589_- | 3.156178e+00 | 1.553689e+00 | 9.780128e-01 | 9.693400e+00 | 3.216406e-22 | 1.221670e-21 | UP | | ENSG00000270060 | LncEditing_242297 | LUAD | chr11_47168659_- | 2.677680e+00 | 1.447787e+00 | 1.127225e+00 | 1.074372e+01 | 6.343727e-27 | 3.762786e-26 | UP | | ENSG00000270060 | LncEditing_242318 | LUAD | chr11_47168750_- | 2.951983e+00 | 1.609670e+00 | 1.142963e+00 | 7.716457e+00 | 1.196080e-14 | 2.271503e-14 | UP | | ENSG00000270060 | LncEditing_242323 | LUAD | chr11_47168795_- | 2.935312e+00 | 1.567964e+00 | 1.105435e+00 | 9.199341e+00 | 3.601509e-20 | 1.105995e-19 | UP | | ENSG00000270060 | LncEditing_242325 | LUAD | chr11_47168798_- | 2.919775e+00 | 1.537030e+00 | 1.080249e+00 | 9.407303e+00 | 5.090286e-21 | 1.695457e-20 | UP | | ENSG00000270060 | LncEditing_242285 | STAD | chr11_47168588_- | 2.336228e+00 | 1.084616e+00 | 9.033446e-01 | 1.157456e+01 | 5.545463e-31 | 1.240797e-29 | UP | | ENSG00000270060 | LncEditing_242286 | STAD | chr11_47168589_- | 2.301535e+00 | 1.084457e+00 | 9.211295e-01 | 1.142103e+01 | 3.283032e-30 | 6.440139e-29 | UP | | ENSG00000270060 | LncEditing_242297 | STAD | chr11_47168659_- | 2.286132e+00 | 1.157960e+00 | 1.019032e+00 | 9.832455e+00 | 8.160511e-23 | 5.486316e-22 | UP | | ENSG00000270060 | LncEditing_242297 | CESC | chr11_47168659_- | 2.206310e+00 | 1.039278e+00 | 9.207639e-01 | 7.369788e+00 | 1.708998e-13 | 6.373577e-13 | UP | | ENSG00000270060 | LncEditing_242297 | PRAD | chr11_47168659_- | 1.849506e+00 | 9.355677e-01 | 1.017060e+00 | 8.496812e+00 | 1.948695e-17 | 6.158709e-17 | UP | | ENSG00000270060 | LncEditing_242297 | BRCA | chr11_47168659_- | 2.075674e+00 | 1.008727e+00 | 9.605741e-01 | 1.677784e+01 | 3.544863e-63 | 2.771092e-62 | UP | | ENSG00000270060 | LncEditing_242323 | BRCA | chr11_47168795_- | 2.084272e+00 | 1.135346e+00 | 1.141016e+00 | 1.207794e+01 | 1.381437e-33 | 2.928001e-33 | UP | | ENSG00000270060 | LncEditing_242325 | BRCA | chr11_47168798_- | 2.175712e+00 | 1.133750e+00 | 1.063395e+00 | 1.250690e+01 | 6.843942e-36 | 1.559732e-35 | UP | | ENSG00000270060 | LncEditing_242297 | PAAD | chr11_47168659_- | 2.204539e+00 | 1.132199e+00 | 1.040204e+00 | 7.401153e+00 | 1.350068e-13 | 1.620082e-12 | UP | | ENSG00000270060 | LncEditing_242323 | PAAD | chr11_47168795_- | 2.435582e+00 | 1.237523e+00 | 1.023739e+00 | 6.388140e+00 | 1.679154e-10 | 8.059940e-10 | UP | | ENSG00000270060 | LncEditing_242325 | PAAD | chr11_47168798_- | 2.418600e+00 | 1.264362e+00 | 1.068647e+00 | 6.331925e+00 | 2.421217e-10 | 1.145815e-09 | UP | | ENSG00000270060 | LncEditing_242285 | ESCA | chr11_47168588_- | 2.104044e+00 | 1.267327e+00 | 1.367286e+00 | 7.327571e+00 | 2.343616e-13 | 1.275901e-12 | UP | | ENSG00000270060 | LncEditing_242286 | ESCA | chr11_47168589_- | 2.101636e+00 | 1.269564e+00 | 1.375175e+00 | 7.327571e+00 | 2.343616e-13 | 1.275901e-12 | UP | | ENSG00000270060 | LncEditing_242297 | ESCA | chr11_47168659_- | 2.136969e+00 | 1.225909e+00 | 1.247328e+00 | 6.944465e+00 | 3.798983e-12 | 1.672830e-11 | UP | | ENSG00000270060 | LncEditing_242323 | ESCA | chr11_47168795_- | 2.336717e+00 | 1.518708e+00 | 1.608653e+00 | 3.414872e+00 | 6.381203e-04 | 7.397678e-04 | UP | | ENSG00000270060 | LncEditing_242325 | ESCA | chr11_47168798_- | 2.342950e+00 | 1.504589e+00 | 1.565051e+00 | 4.101614e+00 | 4.102785e-05 | 5.371292e-05 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000270060 | LncEditing_242286 | 3.194542e-01 | 1.971823e-02 | 2.151079e-02 | | ENSG00000270060 | LncEditing_242325 | -5.552597e-01 | 8.975785e-03 | 1.887665e-02 | | ENSG00000270060 | LncEditing_242323 | -4.036721e-01 | 2.695599e-02 | 3.509599e-02 | | ENSG00000270060 | LncEditing_242323 | 3.756611e-01 | 1.422114e-02 | 2.454839e-02 | | ENSG00000270060 | LncEditing_242325 | -3.823201e-01 | 3.378901e-02 | 3.566171e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000270060 | ENSG00000013441 | CLK1 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000044446 | PHKA2 | BLCA,BRCA,ESCA,GBM,KIRC,KIRP,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000062716 | VMP1 | BLCA,BRCA,CHOL,COAD,KIRC,KIRP,PAAD,UCEC | KIRC | | | ENSG00000270060 | ENSG00000072609 | CHFR | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000073605 | GSDMB | BLCA,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000077044 | DGKD | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,TGCT,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000102287 | GABRE | BLCA,CHOL,COAD,KIRC,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000109046 | WSB1 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000113108 | APBB3 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000113240 | CLK4 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000117616 | RSRP1 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000130158 | DOCK6 | BLCA,CESC,CHOL,GBM,KIRC,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000132522 | GPS2 | BLCA,BRCA,CESC,CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000138834 | MAPK8IP3 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000139625 | MAP3K12 | BLCA,BRCA,CHOL,GBM,KIRC,KIRP,LGG,OV,STAD,TGCT,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000139631 | CSAD | BLCA,BRCA,CESC,COAD,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000139636 | LMBR1L | BLCA,BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000161010 | MRNIP | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000161960 | EIF4A1 | BLCA,BRCA,CESC,CHOL,COAD,GBM,KIRC,KIRP,LGG,OV,PAAD,TGCT,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000163872 | YEATS2 | BLCA,CHOL,COAD,GBM,KIRC,TGCT,THYM | KIRC | | | ENSG00000270060 | ENSG00000166012 | TAF1D | BLCA,CHOL,COAD,KIRC,KIRP,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000167615 | LENG8 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000173548 | SNX33 | BLCA,CHOL,KIRC,OV,TGCT | KIRC | | | ENSG00000270060 | ENSG00000175265 | GOLGA8A | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,UCEC | KIRC | | | ENSG00000270060 | ENSG00000175309 | PHYKPL | BLCA,BRCA,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000175455 | CCDC14 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000184445 | KNTC1 | BLCA,CESC,CHOL,COAD,GBM,KIRC,KIRP,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000184465 | WDR27 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000186088 | GSAP | BLCA,BRCA,CHOL,COAD,KIRC,KIRP,PAAD,STAD,THCA,UCEC | KIRC | | | ENSG00000270060 | ENSG00000186166 | CENATAC | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000196123 | KIAA0895L | BLCA,CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000197774 | EME2 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000197948 | FCHSD1 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000204149 | AGAP6 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000214021 | TTLL3 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000221978 | CCNL2 | BLCA,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000250067 | YJEFN3 | BLCA,CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD | KIRC | | | ENSG00000270060 | ENSG00000256525 | POLG2 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,PAAD,STAD,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000266338 | NBPF15 | BLCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,PAAD,STAD,TGCT,THCA | KIRC | | | ENSG00000270060 | ENSG00000004777 | ARHGAP33 | BRCA,CHOL,ESCA,GBM,KIRC,KIRP,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000061938 | TNK2 | BRCA,GBM,KIRC,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000069493 | CLEC2D | BRCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000091592 | NLRP1 | BRCA,KIRC,KIRP,OV,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000100288 | CHKB | BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,PAAD,STAD | KIRC | | | ENSG00000270060 | ENSG00000104859 | CLASRP | BRCA,CESC,CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000130653 | PNPLA7 | BRCA,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000139597 | N4BP2L1 | BRCA,ESCA,KIRC,KIRP,LGG,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000142303 | ADAMTS10 | BRCA,CHOL,GBM,KIRC,KIRP,LGG,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000161791 | FMNL3 | BRCA,COAD,GBM,KIRC,TGCT,THYM | KIRC | | | ENSG00000270060 | ENSG00000162572 | SCNN1D | BRCA,CHOL,GBM,KIRC,KIRP,LGG,PAAD | KIRC | | | ENSG00000270060 | ENSG00000167604 | NFKBID | BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000167984 | NLRC3 | BRCA,KIRC,PAAD,STAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000204305 | AGER | BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,PAAD,STAD | KIRC | | | ENSG00000270060 | ENSG00000204681 | GABBR1 | BRCA,CHOL,COAD,KIRC,KIRP,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000213066 | CEP43 | BRCA,COAD,ESCA,KIRC,KIRP,TGCT,THCA,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000213903 | LTB4R | BRCA,CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000214193 | SH3D21 | BRCA,KIRC,OV,PAAD,TGCT,THCA | KIRC | | | ENSG00000270060 | ENSG00000222009 | BTBD19 | BRCA,COAD,GBM,KIRC,KIRP,OV,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000127415 | IDUA | CESC,CHOL,ESCA,GBM,KIRC,KIRP,LGG,THCA | KIRC | | | ENSG00000270060 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,KIRP,PAAD | KIRC | | | ENSG00000270060 | ENSG00000172890 | NADSYN1 | CESC,CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000014914 | MTMR11 | CHOL,ESCA,KIRC,KIRP,PAAD | KIRC | | | ENSG00000270060 | ENSG00000076928 | ARHGEF1 | CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000090924 | PLEKHG2 | CHOL,COAD,GBM,KIRC,KIRP,THYM | KIRC | | | ENSG00000270060 | ENSG00000099331 | MYO9B | CHOL,GBM,KIRC,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000100429 | HDAC10 | CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000102125 | TAZ | CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000103326 | CAPN15 | CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000105486 | LIG1 | CHOL,GBM,KIRC,KIRP,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000105643 | ARRDC2 | CHOL,ESCA,KIRC,KIRP,PAAD | KIRC | | | ENSG00000270060 | ENSG00000108773 | KAT2A | CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000127586 | CHTF18 | CHOL,GBM,KIRC,KIRP,LGG,OV,THCA | KIRC | | | ENSG00000270060 | ENSG00000132326 | PER2 | CHOL,COAD,GBM,KIRC,KIRP,OV,PAAD,TGCT | KIRC | | | ENSG00000270060 | ENSG00000135596 | MICAL1 | CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000135722 | FBXL8 | CHOL,KIRC,KIRP,PAAD,STAD | KIRC | | | ENSG00000270060 | ENSG00000135723 | FHOD1 | CHOL,KIRC,OV,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000154760 | SLFN13 | CHOL,KIRC,KIRP,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000158062 | UBXN11 | CHOL,ESCA,KIRC,KIRP,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000160072 | ATAD3B | CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000164877 | MICALL2 | CHOL,ESCA,KIRC,KIRP,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000167702 | KIFC2 | CHOL,GBM,KIRC,KIRP,OV,PAAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000168404 | MLKL | CHOL,KIRC,KIRP,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000173442 | EHBP1L1 | CHOL,KIRC,KIRP,OV,PAAD,TGCT,THYM | KIRC | | | ENSG00000270060 | ENSG00000174943 | KCTD13 | CHOL,KIRC,KIRP,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000177595 | PIDD1 | CHOL,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000182325 | FBXL6 | CHOL,GBM,KIRC,KIRP,LGG,THCA | KIRC | | | ENSG00000270060 | ENSG00000185101 | ANO9 | CHOL,ESCA,KIRC,KIRP,OV,PAAD,STAD | KIRC | | | ENSG00000270060 | ENSG00000187961 | KLHL17 | CHOL,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000198604 | BAZ1A | CHOL,COAD,KIRC,KIRP,PAAD,THYM,UCEC | KIRC | | | ENSG00000270060 | ENSG00000213923 | CSNK1E | CHOL,KIRC,KIRP,PAAD,TGCT,THCA | KIRC | | | ENSG00000270060 | ENSG00000217930 | PAM16 | CHOL,KIRC,KIRP,LGG,PAAD,STAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000240038 | AMY2B | CHOL,GBM,KIRC,KIRP,LGG,OV,THCA | KIRC | | | ENSG00000270060 | ENSG00000267796 | LIN37 | CHOL,KIRC,KIRP,LGG,THCA | KIRC | | | ENSG00000270060 | ENSG00000273899 | NOL12 | CHOL,GBM,KIRC,KIRP,LGG,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000076641 | PAG1 | COAD,ESCA,GBM,KIRC,THYM | KIRC | | | ENSG00000270060 | ENSG00000132530 | XAF1 | COAD,GBM,KIRC,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000185189 | NRBP2 | COAD,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000205268 | PDE7A | COAD,GBM,KIRC,LGG,PAAD,STAD,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000164403 | SHROOM1 | ESCA,GBM,KIRC,PAAD,TGCT,THCA | KIRC | | | ENSG00000270060 | ENSG00000184205 | TSPYL2 | ESCA,KIRC,KIRP,OV,THCA | KIRC | | | ENSG00000270060 | ENSG00000009694 | TENM1 | GBM,KIRC,KIRP,THCA,THYM | KIRC | | | ENSG00000270060 | ENSG00000010295 | IFFO1 | GBM,KIRC,KIRP,LGG,THYM | KIRC | | | ENSG00000270060 | ENSG00000060491 | OGFR | GBM,KIRC,KIRP,LGG,PAAD | KIRC | | | ENSG00000270060 | ENSG00000142102 | PGGHG | GBM,KIRC,KIRP,LGG,OV,PAAD,THCA | KIRC | | | ENSG00000270060 | ENSG00000158717 | RNF166 | GBM,KIRC,KIRP,LGG,PAAD | KIRC | | | ENSG00000270060 | ENSG00000065357 | DGKA | KIRC,KIRP,LGG,PAAD,THYM | KIRC | | | ENSG00000270060 | ENSG00000160271 | RALGDS | KIRC,LGG,OV,THCA,THYM | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000270060 | ENST00000524412 | UQCRC1 | ENSG00000010256 | ENST00000203407 | -0.1364 | 369 | - | KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000270060.1 | ENST00000524412.1 | 64 | 2 | 196 |
|
