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lncRNA: ENSG00000269680

Summary for CTD-3128G10.6

Gene summary

Gene information	Ensembl ID	ENSG00000269680
	Gene symbol	CTD-3128G10.6
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-3128G10.6

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000269680	5.315870e+01	3.331376e+00	4.414368e-01	7.546667e+00	4.470000e-14	9.700000e-13	UP	CHOL
ENSG00000269680	5.057345e+01	2.626726e+00	5.809815e-01	4.521188e+00	6.150000e-06	1.191240e-04	UP	CESC
ENSG00000269680	2.585689e+01	1.008318e+00	2.565636e-01	3.930091e+00	8.490000e-05	6.537890e-04	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000269680	5.290969e-01	1.863900e-04	CHOL	4.823199e-04

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lncRNA-Protein interaction for CTD-3128G10.6

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000168137	SETD5	85.09	94.6375	Q9C0A6	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000119778	ATAD2B	74.9	93.0215	Q9ULI0	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000185658	BRWD1	70.53	96.1554	Q9NSI6	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000187605	TET3	63.08	92.2948	O43151	TF,Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000173575	CHD2	61.02	92.6491	O14647	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000117625	RCOR3	14.83	92.3039	Q9P2K3	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000143033	MTF2	5.23	90.042	Q9Y483	TF,Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000147162	OGT	78.58	91.8676	O15294	Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000116560	SFPQ	40.82	92.5321	P23246	RBP,Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000170485	NPAS2	28.19	93.9921	Q99743	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000130254	SAFB2	74.64	92.473	Q14151	TF,RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000187605	TET3	63.08	91.4145	O43151	TF,Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000170485	NPAS2	28.19	92.0287	Q99743	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000130254	SAFB2	74.64	93.2743	Q14151	TF,RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000163728	TTC14	69.04	92.2007	Q96N46	RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000134815	DHX34	68.7	92.396	Q14147	RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000003756	RBM5	68.46	90.8995	P52756	RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000079134	THOC1	49.34	90.6599	Q96FV9	RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000135870	RC3H1	45.87	92.5871	Q5TC82	RBP	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000116560	SFPQ	40.82	92.2148	P23246	RBP,Epi	NA
ENSG00000269680	ENST00000594056	CTD-3128G10.6	ENSG00000162231	NXF1	10.44	91.6138	Q9UBU9	RBP	NA

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lncRNA-DNA interaction for CTD-3128G10.6

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,GSDMB,VAMP1,EPOR,GPR108,MFSD8,ABHD17A,TMEM234,CIRBP,KIFC3,MZF1,TTC31,MAPK8IP3,LYSMD4,SUGP2,N4BP2L2,BCS1L,DMTF1,MKNK1,L3HYPDH,LMBR1L,GPCPD1,ULK3,VMP1,CENATAC,NPEPL1,SAFB2,MSANTD2,TUBGCP6,CCDC14,SSH3,CLK4,ZBED5,TTC14,TRIP10,KNTC1,SLC2A11,GATD1,TAZ,SPG7,MIDN,PPP1R13L,SCYL3,CLCN6,OGT,SCML1,CPSF1,COX19,CLK2,POLG2,DHX34,CHKB,CAPN8,METTL17,TRIM11,OSGEP,CLK1,RABL2A,RPAIN,OFD1,ACYP1,CCDC9B,SLC25A29,FCHSD1,IFT172,CC2D1B,ANO8,RSRC2,CAMKMT,INO80E,NAPB,C3orf62,LPCAT4,SETD5,ZFP62,GON4L,ORMDL1,SH2D3A,DDX51,AGER,ORC2,OSBPL3,NFKBIZ,SRSF2,C1orf52,CDK11A,PASK,ATG4B,SUPT20H,LMNTD2,CCDC191,NXF1,DCUN1D2,PAN2,FAM229A,SLFN13,SLC25A16,DUS3L,GIGYF1,FAM193B,PNKP,ABCA7,TMCO6,NOL3,ZFC3H1,KLHL17,MBTD1,DNASE1,HEXD,GAS8,VCPKMT,EIF4A1,CCDC24,POLM,ZNF69,MPZL3,ERCC5,FANCL,PLEKHG5,GLI4,CAPN12,LENG8,SH2B1,PHKA2,C1orf159,DGKA,PRR3,FAM98C,NICN1,IP6K2,PPOX,SPICE1,SH3D21,PPWD1,RELCH,MLLT6,ATG12,INO80D,SH3YL1,DDX55,ARFGAP1,CAPN10,BICDL2,AP1G2,FAM111A,THOC1,ANKMY1,WDR59,TNK2,INTS11,ARHGAP27,REXO1,ZMYM5,TAMM41,NBEAL2,RC3H1,ZNF44,TRIM13,ARHGEF38,LTO1,METAP1D,BCLAF3,IFT80,ALS2CL,CEP83,UBN2,EXD3,NFKBID,CYP3A5,LRIG2,P4HTM,PCED1A,ABTB1,NRBP2,MAPK15,IKBKB,NBPF11,DYNLT2,ACIN1,ZC3H8,ENOSF1,MAU2,ANKRD49,PAXBP1,FNBP4,DENND6B,PHF11,RSRP1,NEK8,CHD2,USP40,CRACR2B,ATG14,LTB4R,KIFC2,TSNARE1,ANKLE2,ODF3B,HEMK1,GSAP,STAT6,DDX11,FBXL8,NDUFAF7,RBM6,TRMT13,KRTCAP2,ZNF862,IDUA,TMEM134,TNFRSF14,WDR27,UBXN11,HECTD4,EME2,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,HPS4,PNISR,SFPQ,MIER2,TMEM63A,AMT,ACAP3,CARD8,ENKD1,ATAD2B,SRSF7,ZNF10,NISCH,ATAT1,TRMU,ANGEL2,MYSM1,AKAP8,TAF1D,KATNBL1,PLEKHH1,CCDC174,SPIN3,TBRG1,SLX4IP,RDH13,KLHDC4,GATAD1,CCNL2,TET3,CLK3,RNPC3,ANKRD10,VPS9D1,GABBR1,CHTOP,BTBD19,MC1R,TYK2,CCNT2,OSBPL7,KAT2A,ZNF91,ACBD4,BRWD1,RBM26,PLA2G6,CSNK1E,RBM25,FBXW7,RHPN1,BLCAP,MLH3,SETD6,KANSL1L,POLI,PRPF39,ERMARD,EPS8L1,SRRM2,MIB2,PHF1,HDAC10,HEXIM2,CEP44,HSF4,RBM41,ANKS3,ARGLU1,NOXA1,YJEFN3,CCNL1,RGL3,SGSM2,RASSF7,VMAC,KRI1,CELF1,TMEM161B,MICALL2,HSPBAP1,CRYGS,PMS1,SLC8B1,ZGPAT,PBX4,TIA1,HOOK2,ZNF83,TMUB2,ABCD4,TBC1D8,ERCC3,NEIL1,SZT2,GRIPAP1,UBA7,CRAMP1,LUC7L,PNN,LUC7L2,BRD8,MAP2K7,MROH1,TRA2A,REV1,NEURL4,HINFP,NR2C1,APBB3,CYTH2,WBP1,TEPSIN,RBM33,NADSYN1,CFAP44,AGAP6,RBM19,GGA3,MST1R,GABPB2,RBM39,ODF2L,SLC26A6,SLC25A27,PGS1,IRF3,ZCCHC8,TMEM44,INTS3,PIGL,NEK3,CSAD,KIAA0895L,ATAD3B,SAMD10,GPATCH2,MUTYH,DCAF8,LAMA5,MFSD10,PHYKPL,TMEM259,SF3B1,POFUT2,RUFY3,OGA,RECQL5,PAN3,PHKG2,SARS2,SUPT7L,CENPT,S100PBP,CALCOCO1,MTG1,FAM76B,POGZ,ARRDC2,EXOG,TAF1C,ADAT2,MAP3K12,GABRE,RHBDF1,CAPN15,CNKSR1,EZH1,MRNIP,SS18L1,ELMOD3,DDX17,GSTM2,MED15,HAUS5,SENP7,MTRF1,RAD52,CEP43,HDAC7,FBXL12,CEP290,PGGHG,TELO2,WSB1,C12orf76,ANO9,POLL,FAM228B,USP21,ABCC5,TIGD1,KLC1,GPS2,TRIM52,NOL12,PCP2,CLASRP,TTC13,MBD6,CWC25,STK36,TRAF4,TTC32,ZMAT1,GOLGA8B,YOD1,ALPK1,ACP6,GOLGA8A,CYP2R1,PAM16,SETD4,SPIRE2,AARSD1,DUSP28,RBM5,NKTR,YPEL3,SAP30BP,C19orf71,TTLL3,ZNF84,BAZ2B,PARP6,OBSCN,MTMR11,PLEKHN1,LRP5L,FBRS,SH3GLB2,SIRT6,MAN2C1,USPL1,MRPL38,ANKRD13D,WHAMM,CCDC57,TRAPPC2,SIRT7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DCAF8,ANGEL2,ZC3H11A,TMCO6,HEMK1,YOD1,SIN3B,MZF1,CCDC66,FAM111A,CYTH2,MFSD8,C3orf62,UBA7,FAM160B2,SLC25A16,MIDN,RBM5,VAMP1,QTRT1,ZMAT1,LYSMD4,S100PBP,PGS1,KIAA0907,TMEM44,RGL3,ORC2,CFLAR,SETD6,DGCR8,AARSD1,SUN1,NEK8,ALPK1,MAU2,SETD4,RBM6,ERCC3,ACCS,ENGASE,SPICE1,INTS3,GRIPAP1,ACP6,PBX4,CELF1,ENOSF1,PDDC1,AP4B1,GGA1,WSB1,MDM4,CIRBP,STX16

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-3128G10.6

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PSMD2,RAB5C

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000269680	ENST00000594056	exon_skip_41813	chr10:68337857-68337996	-13.86	-0.1118	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_74009	chr11:64773429-64773505	-10.51	-0.1844	SF1	ENST00000377390	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_133217	chr16:8635038-8635079	-8.30	-0.2594	METTL22	ENST00000381920	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_300663	chr19:1425877-1425960	-10.30	-0.1717	DAZAP1	ENST00000233078	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_374497	chr3:49999439-49999513	-11.43	-0.1657	RBM6	ENST00000266022	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_380242	chr3:186784961-186785101	-13.05	-0.1345	EIF4A2	ENST00000323963	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_382458	chr3:38131595-38131638	-5.81	-0.1490	ACAA1	ENST00000333167	Frame-shift
ENSG00000269680	ENST00000594056	exon_skip_381032	chr3:9760655-9760768	-11.78	-0.1144	CAMK1	ENST00000256460	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-3128G10.6

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000269680	ENSG00000006025	OSBPL7	BLCA,CESC,CHOL,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000007384	RHBDF1	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000007545	CRAMP1	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,READ	CHOL
ENSG00000269680	ENSG00000046651	OFD1	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CHOL
ENSG00000269680	ENSG00000061938	TNK2	BLCA,LUAD,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000095066	HOOK2	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000100068	LRP5L	BLCA,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000100288	CHKB	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000100429	HDAC10	BLCA,CHOL,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000102287	GABRE	BLCA,COAD,LUAD,PAAD,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000103168	TAF1C	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000104881	PPP1R13L	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000105443	CYTH2	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,READ,THCA,UCEC	CHOL
ENSG00000269680	ENSG00000105556	MIER2	BLCA,CHOL,KIRP,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000108773	KAT2A	BLCA,CHOL,KIRP,LUAD,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000122417	ODF2L	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,THCA,UCEC	CHOL
ENSG00000269680	ENSG00000125731	SH2D3A	BLCA,CESC,CHOL,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CESC,CHOL
ENSG00000269680	ENSG00000125733	TRIP10	BLCA,CESC,CHOL,KIRP,LUSC,OV,PAAD,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000127415	IDUA	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000130590	SAMD10	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000130702	LAMA5	BLCA,CESC,CHOL,LUSC,PAAD,PRAD	CHOL
ENSG00000269680	ENSG00000132680	KHDC4	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CESC,CHOL,READ
ENSG00000269680	ENSG00000138834	MAPK8IP3	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000141013	GAS8	BLCA,CHOL,KIRP,LUAD,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000142330	CAPN10	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000142675	CNKSR1	BLCA,CHOL,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000146830	GIGYF1	BLCA,CHOL,COAD,KIRP,OV,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000147162	OGT	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000148341	SH3GLB2	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000158106	RHPN1	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000159314	ARHGAP27	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000160602	NEK8	BLCA,CHOL,KIRP,PAAD,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000160796	NBEAL2	BLCA,CHOL,KIRP,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000162836	ACP6	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000163482	STK36	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000164050	PLXNB1	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000164078	MST1R	BLCA,CESC,CHOL,KIRP,LUAD,LUSC,PAAD	CESC,CHOL
ENSG00000269680	ENSG00000164877	MICALL2	BLCA,CESC,CHOL,KIRP,OV,PAAD,THCA	CESC,CHOL
ENSG00000269680	ENSG00000166012	TAF1D	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000167615	LENG8	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000167702	KIFC2	BLCA,CHOL,KIRP,PAAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000168096	ANKS3	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000172830	SSH3	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000172932	ANKRD13D	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000175265	GOLGA8A	BLCA,CESC,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CESC
ENSG00000269680	ENSG00000175455	CCDC14	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CESC
ENSG00000269680	ENSG00000176454	LPCAT4	BLCA,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000178038	ALS2CL	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CESC
ENSG00000269680	ENSG00000179832	MROH1	BLCA,CESC,CHOL,KIRP,PAAD	CESC,CHOL
ENSG00000269680	ENSG00000184402	SS18L1	BLCA,COAD,KIRP,LUSC,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000184465	WDR27	BLCA,CESC,CHOL,COAD,KIRP,PAAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000184786	DYNLT2	BLCA,CHOL,COAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000185101	ANO9	BLCA,CHOL,KIRP,OV,PAAD,READ,UCEC	CHOL,READ
ENSG00000269680	ENSG00000185522	LMNTD2	BLCA,CHOL,KIRP,OV,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000185917	SETD4	BLCA,CHOL,COAD,KIRP,LUAD,PAAD,PRAD,READ,THCA,UCEC	CHOL
ENSG00000269680	ENSG00000186166	CENATAC	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000187583	PLEKHN1	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000187961	KLHL17	BLCA,CESC,CHOL,KIRP,LUAD,LUSC,PAAD,THCA	CESC
ENSG00000269680	ENSG00000188549	CCDC9B	BLCA,CHOL,KIRP,LUSC,OV,PAAD	CHOL
ENSG00000269680	ENSG00000188747	NOXA1	BLCA,CESC,CHOL,KIRP,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000189007	ADAT2	BLCA,COAD,PAAD,READ,UCEC	READ
ENSG00000269680	ENSG00000196187	TMEM63A	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000197774	EME2	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000197948	FCHSD1	BLCA,CHOL,COAD,KIRP,OV,PAAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000198707	CEP290	BLCA,CHOL,COAD,KIRP,LUAD,READ	CHOL
ENSG00000269680	ENSG00000204149	AGAP6	BLCA,CESC,CHOL,COAD,KIRP,OV,PAAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000204271	SPIN3	BLCA,CHOL,COAD,KIRP,LUAD,READ	READ
ENSG00000269680	ENSG00000204305	AGER	BLCA,CHOL,COAD,KIRP,PAAD,READ,UCEC	CHOL
ENSG00000269680	ENSG00000204681	GABBR1	BLCA,CHOL,COAD,KIRP,READ,THCA	CHOL
ENSG00000269680	ENSG00000205517	RGL3	BLCA,CHOL,KIRP,LUAD,LUSC,OV,PAAD,READ,THCA,UCEC	CHOL
ENSG00000269680	ENSG00000205593	DENND6B	BLCA,CHOL,KIRP,LUSC,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000213139	CRYGS	BLCA,CHOL,KIRP,PAAD,UCEC	CHOL
ENSG00000269680	ENSG00000214021	TTLL3	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000215252	GOLGA8B	BLCA,CESC,CHOL,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000221978	CCNL2	BLCA,CESC,COAD,KIRP,LUAD,LUSC,OV,PAAD,PRAD,READ,THCA,UCEC	READ
ENSG00000269680	ENSG00000256525	POLG2	BLCA,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000273899	NOL12	BLCA,CHOL,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000061273	HDAC7	CESC,CHOL,KIRP,LUAD,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000062716	VMP1	CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CESC
ENSG00000269680	ENSG00000064687	ABCA7	CESC,LUAD,LUSC,PAAD,THCA	CESC
ENSG00000269680	ENSG00000074855	ANO8	CESC,CHOL,KIRP,LUAD,LUSC,PAAD,READ,THCA	CESC
ENSG00000269680	ENSG00000076604	TRAF4	CESC,CHOL,KIRP,PAAD,THCA	CESC
ENSG00000269680	ENSG00000122678	POLM	CESC,CHOL,KIRP,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000140859	KIFC3	CESC,CHOL,LUAD,LUSC,THCA	CHOL
ENSG00000269680	ENSG00000160439	RDH13	CESC,CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD	CESC,CHOL
ENSG00000269680	ENSG00000183397	C19orf71	CESC,CHOL,LUAD,LUSC,OV	CHOL
ENSG00000269680	ENSG00000225697	SLC26A6	CESC,KIRP,LUAD,LUSC,READ,THCA	CESC
ENSG00000269680	ENSG00000014914	MTMR11	CHOL,KIRP,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000070882	OSBPL3	CHOL,COAD,KIRP,PAAD,READ	CHOL,READ
ENSG00000269680	ENSG00000077463	SIRT6	CHOL,KIRP,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000092978	GPATCH2	CHOL,COAD,KIRP,PAAD,READ,UCEC	CHOL
ENSG00000269680	ENSG00000099917	MED15	CHOL,KIRP,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000103037	SETD6	CHOL,COAD,KIRP,LUAD,PAAD,READ,THCA	READ
ENSG00000269680	ENSG00000105643	ARRDC2	CHOL,KIRP,PAAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000109736	MFSD10	CHOL,KIRP,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000115687	PASK	CHOL,COAD,KIRP,LUAD,PRAD,READ	CHOL,READ
ENSG00000269680	ENSG00000116580	GON4L	CHOL,COAD,KIRP,PAAD,READ	CHOL
ENSG00000269680	ENSG00000119640	ACYP1	CHOL,COAD,KIRP,PRAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000131037	EPS8L1	CHOL,KIRP,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000137343	ATAT1	CHOL,COAD,KIRP,PAAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000138002	IFT172	CHOL,KIRP,OV,PAAD,READ	CHOL
ENSG00000269680	ENSG00000139624	CERS5	CHOL,COAD,KIRP,READ,THCA	CHOL
ENSG00000269680	ENSG00000139625	MAP3K12	CHOL,KIRP,LUAD,OV,THCA	CHOL
ENSG00000269680	ENSG00000143258	USP21	CHOL,KIRP,PAAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000143643	TTC13	CHOL,COAD,KIRP,LUAD,READ	CHOL
ENSG00000269680	ENSG00000144134	RABL2A	CHOL,KIRP,LUAD,OV,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000144445	KANSL1L	CHOL,COAD,KIRP,LUAD,READ,UCEC	CHOL
ENSG00000269680	ENSG00000145014	TMEM44	CHOL,KIRP,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000149716	LTO1	CHOL,COAD,KIRP,PAAD,READ,THCA	CHOL
ENSG00000269680	ENSG00000154760	SLFN13	CHOL,KIRP,LUAD,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000158062	UBXN11	CHOL,KIRP,LUAD,LUSC,PRAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000173681	BCLAF3	CHOL,COAD,KIRP,LUAD,PAAD,READ,UCEC	CHOL
ENSG00000269680	ENSG00000181085	MAPK15	CHOL,KIRP,PAAD,READ,THCA	CHOL,READ
ENSG00000269680	ENSG00000184445	KNTC1	CHOL,COAD,KIRP,PAAD,READ	CHOL,READ
ENSG00000269680	ENSG00000197119	SLC25A29	CHOL,KIRP,LUAD,LUSC,OV,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000213923	CSNK1E	CHOL,KIRP,LUSC,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000214193	SH3D21	CHOL,LUAD,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000269680	ENSG00000215440	NPEPL1	CHOL,COAD,KIRP,LUAD,LUSC,PAAD,PRAD,READ,THCA,UCEC	CHOL,READ
ENSG00000269680	ENSG00000236699	ARHGEF38	CHOL,COAD,KIRP,LUAD,PAAD,READ	CHOL
ENSG00000269680	ENSG00000240230	COX19	CHOL,COAD,KIRP,PAAD,READ	CHOL,READ
ENSG00000269680	ENSG00000249115	HAUS5	CHOL,KIRP,PRAD,READ,THCA	READ
ENSG00000269680	ENSG00000250067	YJEFN3	CHOL,KIRP,LUSC,OV,PAAD,PRAD	CHOL
ENSG00000269680	ENSG00000258839	MC1R	CHOL,KIRP,LUAD,LUSC,THCA	CHOL
ENSG00000269680	ENSG00000275023	MLLT6	CHOL,KIRP,LUAD,PAAD,THCA	CHOL
ENSG00000269680	ENSG00000047634	SCML1	COAD,KIRP,PAAD,PRAD,READ,THCA	READ

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000132716	DCAF8	5	CHOL,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000127511	SIN3B	5	BLCA,CHOL,KIRP,LUAD,LUSC
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000099326	MZF1	6	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000105443	CYTH2	5	BLCA,CHOL,KIRP,LUAD,LUSC
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000003756	RBM5	6	BLCA,KIRP,LUAD,LUSC,OV,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000213339	QTRT1	6	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000132680	KHDC4	7	BLCA,CHOL,KIRP,LUAD,LUSC,OV,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000205517	RGL3	5	BLCA,CHOL,KIRP,LUAD,OV
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000128191	DGCR8	5	BLCA,CHOL,KIRP,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000266967	AARSD1	6	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000004534	RBM6	5	BLCA,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000167280	ENGASE	6	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000132199	ENOSF1	5	BLCA,CHOL,KIRP,LUAD,LUSC
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000099622	CIRBP	7	BLCA,CHOL,KIRP,LUAD,LUSC,OV,PRAD
ENSG00000269680	ENSG00000130254	SAFB2	ENSG00000124222	STX16	6	BLCA,CHOL,KIRP,LUAD,LUSC,PRAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000269680.1	ENST00000594056.1	135	405	1

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential