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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000269293

Summary for ZSCAN16-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000269293

Gene symbol

ZSCAN16-AS1

Gene nameZSCAN16 antisense RNA 1
HGNC

48982

Entrez ID

100129195

Gene typeantisense
Synonyms06p22.1|ZSCAN16-AS1
UniProtAcc

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Structure and expression level for ZSCAN16-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002692932.947855e+02-1.618806e+003.876832e-01-4.175591e+002.970000e-051.459550e-04DOWNCHOL
ENSG000002692932.621173e+02-1.058360e+001.514142e-01-6.989835e+002.750000e-125.100000e-11DOWNSTAD
ENSG000002692939.137374e+01-1.090743e+003.305828e-01-3.299455e+009.687290e-045.452118e-03DOWNREAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000269293-4.644144e-014.552151e-06KICH1.070693e-05

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lncRNA-Protein interaction for ZSCAN16-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000269293ENST00000602810ZSCAN16-AS1ENSG00000136630HLX10.092.7905Q14774TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for ZSCAN16-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
GSTM3,MAD2L2,NDUFS3,IFT22,NAPRT,CIRBP,NUDT18,RNF166,C1orf56,SHARPIN,RGS10,SRP19,CACFD1,TMUB1,PPP2R3B,TRUB2,TDP2,MDH2,MRPS12,NDUFB9,ZNF622,METTL5,SNRPA,DTYMK,TRAPPC2L,DEGS2,COMMD7,TERF2IP,COA4,NDUFB2,SDF2,CA11,VKORC1,MPLKIP,GLO1,SSU72,TMEM242,HSPE1,MRPS11,MON1A,CRELD2,CDKN2AIPNL,RBM42,CSNK2B,FUOM,GCDH,MEA1,COPZ2,RPL35,PPP1R14A,MIIP,C22orf39,C12orf73,FUZ,TSC22D4,MRPS2,VARS2,CDKN2C,FBXW9,CCDC167,HMGN3,YIPF3,NDUFB1,MPG,PDRG1,HEXD,IDH3B,PTRHD1,CDK5,MCRIP1,ABHD8,GPT,MRPL52,PRADC1,NMRAL1,COX6B1,NDUFS8,DDX56,FAM98C,SWI5,MALSU1,YIF1A,RPL23,FAHD2B,GUK1,HSCB,RPL13A,LSM3,NUBP2,CISD1,SRP14,STYXL1,NPDC1,JTB,MVB12A,PFN1,RAB17,MPND,SCAMP3,PTTG1,CLIC1,NXT1,TRPT1,MRPS18B,SERP2,TMEM199,DMAC1,SPC24,NPM3,IDUA,CNPY4,SULT1A1,CUEDC2,SCAND1,COX14,HAGH,PPCDC,CCDC51,ATP5IF1,VPS72,BOK,DUT,NDUFS6,PYM1,AP2S1,NUDC,MYPOP,NFKBIB,TIMM9,MIEN1,UQCRH,TP53I13,BEX5,PMF1-BGLAP,SNU13,SNRPD3,NDUFB5,UQCRC1,RPL36AL,PPP1R7,CYBC1,MRPL11,BAD,PTS,CCDC22,TMEM258,GEMIN6,HDAC10,ATRAID,NOXA1,MRPL17,UCK1,MARCKSL1,RAD51C,LAMTOR1,SAC3D1,COX7A2L,MZT2A,PSMG4,SFXN4,MAGIX,IFI27L1,BRAT1,GPAA1,PSMG3,NOL7,UQCR10,SAYSD1,WDR46,MYG1,DTX3,RNF215,CKS1B,MAPK11,ABHD14A,LSM2,LUC7L,TWF2,ATP5PF,MRPL43,TOMM7,C8orf76,B9D2,EIF3I,TLCD1,NDUFB10,DDRGK1,ATP5PB,C15orf61,TATDN3,TXN2,HDDC3,GPANK1,SERGEF,RCC1L,HRAS,PEX6,HSBP1,MPDU1,REEP2,MYL9,TTC1,MUTYH,CD81,ASMTL,SRM,RPL27,COMMD5,CINP,B4GAT1,PMF1,LRRC75B,SENP3,MRPS16,CFAP410,MPC1,SERPINB6,STOML2,RNASEH2B,UBL5,RPS8,RPS11,SLC25A26,DGAT1,PRAF2,TEDC1,ERP29,STK19,WASHC1,RWDD2B,PTMS,PEMT,NOL12,LYRM1,SPATA2L,SPATA33,EMC9,MACROD1,DUSP28,CLIP3,BOLA1,PLEKHO1,SIL1,PIGU,PMPCA,SPSB2,TFPT,ZNRD2,TPM2,EMC8,ARL16,UXT,SLIRP,CTF1,BLVRB,POLD2,PET100,CMC2,PEBP1,DYNC2I2,HINT2,B3GAT3,NDUFA11,GNAZ,ENY2,SMUG1,WDR54,LIMS2,SURF2,EIF3G,INPP5K,CDK2AP2,SUGP1,SIGIRR,UQCR11,USE1,ERAL1,LYRM4,PRCC,PSENEN,ANKRD39,MPST,PAOX,GPR137,ACYP1,MRPS34,MRPL14,PSMA5,TSSC4,DDX49,PFDN6,C3orf62,YJU2,ALKBH2,BAG1,TMEM160,PARL,ACTR1A,ESS2,DYNLT1,MED8,C2orf76,PFDN5,PPIL1,HDDC2,SDHAF2,RPL23A,ALG1L,PMVK,CCDC24,UQCRHL,ALKBH3,THOC7,C4orf3,COX7A2,PCYT2,IQCC,MMAB,SLC27A5,MED16,MRPL55,EMG1,HMGCL,MED7,SNRNP25,NDUFB11,IFTAP,C19orf53,TMEM18,EIF2B4,MRPL28,SURF1,DNAJC8,LCMT1,ACBD6,FIS1,CTDNEP1,GTPBP6,MSRB1,TRAPPC4,TMEM251,SHISA4,CCDC106,MED27,NELFE,METTL23,AGPAT1,EXD3,MAF1,STX8,EVA1B,ELP5,CHMP2A,HLX,DNAJC19,ZNF48,CCHCR1,PRMT7,POLR2L,QARS1,EBP,VPS4A,ODF3B,HEMK1,SMIM12,IFT20,FRS3,KRTCAP2,POP5,MYL5,UBXN6,FKBP3,DECR1,FARS2,COPRS,TRIOBP,SRA1,ENKD1,CPTP,BLOC1S1,C11orf1,STMN1,LGALS2,ZBTB8OS,CCDC107,MRPL34,ARF5,CHTF18,JPT1,NDUFV1,TFEB,NAT14,MARCHF9,NPRL2,CCDC85B,VAMP8,HDAC11,SLC66A1,BCAT2,SGSM3,B4GALT7,WDR45,DHRS12,STX10,ST6GALNAC6,UBALD1,VAMP5,ENDOV,FAM207A,ELP6,ERMARD,MYL6,MAD2L1BP,EGFL7,CHADL,RNF25,COX4I1,BCL2L12,NFKBIL1,ECSIT,DYRK4,CENPS,KIAA2013,MYL6B,C19orf25,IPO4,NDUFA5,TRMT61A,COA5,SERTAD1,EIF1B,ATP5F1D,DHRS4,NDUFAF1,HEBP2,SMIM19,FKBP2,TUBB2B,SDSL,GEMIN8,BOLA3,TAF6L,UBA52,MRPS26,TMEM161A,SMIM1,COQ8B,C16orf86,ZSWIM7,SLC25A11,RPS26,OSCP1,BANF1,SEC13,TMEM9,TCEA3,GSTZ1,HAX1,AKT1S1,BIRC5,PHKG2,NARF,TIMM10,BUD31,POLR2J,PTPMT1,ERCC2,POLR2I,CENPT,G6PC3,IAH1,MRTO4,NUDT2,LSM4,C12orf43,PSD,CXXC1,C8orf82,PSMA4,PARD6A,STX5,MRPS33,TBC1D7,PDAP1,NDUFC1,MTFR1L,CRYZL1,ARMC7,SUPT3H,TIMM29,CERK,SPATA24,PSMC5,SMIM4,GNG7,SAMM50,GALK1,MDP1,MAPK3,MRPL54,TCEA2,ISG20,THAP4,PRPSAP2,KRT10,TMEM234,PSMB7,ATP5MG,WDR83OS,CTU1,ACD,XAB2,PNKD,NPEPL1,TMEM203,FAAP20,ALDH5A1,COA3,PMM1,NDUFA3,RRP36,PAF1,SVBP,TAZ,C19orf44,RNF167,DAXX,PSMD13,UBAC2,GLRX5,CYB5D2,TMEM198,RAB4B,RNF187,TARBP2,CISD3,RING1,CHKB,CEP89,ABHD14B,DHPS,BABAM1,PIH1D1,MFSD3,CCDC28A,NDUFA2,BORCS6,FDX2,MCAT,CYBA,PSMB3,EMC7,GCAT,FAM229B,ZNF593,ATG4B,CENPM,KIF9,FAM229A,CCS,YIF1B,CCDC159,ACOT8,COA6,EEFSEC,ANAPC11,TOR2A,GABARAP,RRP7A,CCDC12,ILVBL,FDXR,CYB561D2,OARD1,DNAJC4,ADI1,CCDC28B,PRR3,NICN1,PPOX,AK1,MRPL20,COX16,ADPRM,HPF1,APBB1,HMGN2,GMDS,BRI3,IMP4,MRPL24,SPACA9,SMPD2,UBL7,PSMC3,NME4,TBCA,CWC15,CPSF4,NAA10,FBXO44,ATP5F1C,TMEM120A,NHP2,TUSC2,MPC2,THOC6,UBOX5,ANKRD65,GALT,ZFYVE19,TOMM22,IFI27L2,PTRH2,IL11RA,SGF29,NEK8,MBD3,SERF2,RPS10,VPS28,MRPL36,PSPN,NIT1,DAD1,MRPS9,ALKBH4,CDC37,NDUFAF5,AP4M1,FRG1,KHDC1,NTHL1,SOD1,ESD,NSL1,ECI2,STK32C,HSPBP1,TUBB,NDUFAF2,B9D1,DTNBP1,ISOC2,S100A13,NOP10,NCAPH2,ATPAF2,CLDN5,TMEM187,SPAG7,NOSIP,UCHL1,IDH3G,TAF11,MORN2,NUDT1,TRMU,WDR25,PSMA2,STMP1,MYL12B,DNPH1,C1orf35,LSM10,MRPL2,EIPR1,SNX17,HHLA3,LSM5,SEC61B,COPS9,ZMAT5,FIBP,RPL39L,TMEM86B,SLC27A3,DPY30,ITPA,MAP2K2,SF3B6,RAMP2,SH3BGR,ALKBH7,MRPL22,DEAF1,HAUS7,KLC4,SCRN2,GMFG,ANKS3,SMDT1,TRAPPC3,FAM234A,ERCC1,PSMB1,IGFLR1,C14orf93,DPH7,CKLF,UBE2M,FUNDC2,XPA,ATP6V0D1,NDUFAF8,SSR2,NUDT16L1,TMEM115,NDUFA13,SNRPD2,EIF3F,AP4S1,ERH,NAGLU,HSD17B8,NDUFA4,BCL7C,ARPC5L,FRA10AC1,LST1,PYCR2,IFT27,ZNHIT1,SARS2,SWSAP1,NT5C3B,NRTN,CLN3,UBE2D4,IGFBP4,NUDT14,APOM,BIN1,GET3,OCIAD2,ING4,UBXN1,MANF,IFT46,WDR61,COA8,MOSPD3,ATOX1,CST3,NDUFA8,RPS24,NDUFB6,LMAN2,TPRKB,NEDD8,TSR3,YPEL3,SAP30BP,RNASEH2C,NSMCE1,PIN1,RNF5,CARD16,REX1BD,LGALS1,HSD11B1L,FASTK,ECH1,DXO,CCDC57,HINT1,FKBP8,DBI,C12orf57,DPM2,SLC50A1,QPCTL,HMCES,GCHFR,RPS27A,DPP7,MRPL46,RPL26L1,PRKAR1B,STK16,HIRIP3,CCNQ,C6orf136,TPRN,PPIH,SLC66A2,SPRN,FAM104B,GTF2H5,BNIP1,CDC42EP5,AGPAT2,CYB5R1,LYPLAL1,ENSA,UROD,SNHG32,CBY1,WDR83,USF1,INMT,DERL2,ATP5MK,NOC4L,TMEM101,CLPP,FGFBP3,PIGZ,MTLN,TSEN54,MRPL57,BORCS8,DCN,BTG2,SLC25A39,SLC25A28,CZIB,TSPAN4,RPA3,SPATC1L,EIF3K,DECR2,TRIM27,MRPL37,CLTB,DDT,MECR,RABEPK,SDF2L1,SLC9A3R2,TRIR,JMJD4,SCNM1,RTRAF,NDUFB3,FCGRT,GLI4,PDE9A,NDUFB8,SSR4,TECR,ATP6V0B,TAX1BP3,FNDC10,MIX23,PFDN2,ACYP2,RPL37A,ASF1A,GNPTG,NUTF2,C11orf68,C6orf52,INTS11,COMMD9,C5orf38,PUF60,SLC25A42,MAN1B1,CHCHD2,NAA38,TCTA,ABTB1,C11orf98,TBCB,SYCE1L,BRMS1,METTL16,CLEC11A,LENG1,TMEM186,PEX11G,UQCRFS1,COMMD1,FIZ1,PTOV1,GSTO1,S100A4,RPS23,TMEM134,ANXA6,ORAI3,TMEM91,PPP1R14B,RBM8A,DHRS1,UBXN11,DDX41,RSAD1,AKR7A2,JOSD2,CASTOR1,MVD,RFC2,PSME2,PEF1,CLEC3B,MSRA,POMT1,CDPF1,MRPL47,POMGNT1,UBE2J2,TIMM13,MTIF3,MTX1,COQ3,UQCRB,COQ4,CNRIP1,LRRC23,TMEM223,COMTD1,RHPN1,SLC25A10,PPIE,CHMP1A,GEMIN7,MZT2B,CETN2,APOO,DPM3,GON7,NDUFA10,PIGQ,S100B,GPX3,ANKRD54,CHID1,SUMO1,RASSF7,TMEM60,SNTA1,MESP1,B3GALT4,NR2C2AP,EIF2B3,RETREG3,ARFRP1,CIAO2B,AAMDC,MRPL27,RILP,ARPC4,KPTN,CSKMT,ATP5MC3,TPGS1,MICOS10,ECSCR,SUCLG1,C1orf54,SMARCD3,RPS13,SH2D3C,ECHS1,RUVBL2,IRF2BP1,IMMP1L,HSD17B10,RPS17,TPRA1,CFDP1,RPS29,ACOT13,PCSK1N,IRF3,IMP3,CHCHD5,C7orf50,C1orf122,DCTN3,GADD45GIP1,SNF8,SLC25A1,MRPS18A,LIN37,NDUFAF4,RTN4IP1,EMC3,SS18L2,MAPK12,RFXANK,FAM89B,MED31,EMP3,UROS,SHC2,PPP1CA,VAMP2,DBP,C1orf50,DNAJB2,PSMA7,BEND5,UFD1,COX17,OGFOD3,RABAC1,TXNDC17,GAMT,TXNL4A,PPP2R3C,GPATCH3,NDUFB7,NSUN5,RHOC,THYN1,PGLS,RRAS,PSMD8,ETFB,GTF2A2,AUP1,FAM228B,CDC26,RPL36A,THAP3,PYCR3,TTC32,STMN3,TMA7,ITGAE,YBEY,FLOT1,POMZP3,SOX12,POLR2E,KLHDC3,PXMP2,RPS19BP1,HSD17B14,THAP8,TMEM11,TMEM238,NDUFV3,DGCR6L,CRIPT,MRPS14,SIRT6,TMEM54,HSPB11
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
DPH7,NUDC,PEX11G,PSMB3,CCDC167,SMIM1,PGLS,ASF1A,PQBP1,CUEDC2,HEMK1,GPATCH3,EIF3G,CENPM,FKBPL,ALKBH4,OSCP1,CTNNBL1,MIIP,HINT2,C3orf62,ANKRD54,TWF2,MYL5,TIMM22,MANBAL,NDUFB11,NMB,PPCDC,NT5M,NT5C,FAM234A,MACROD1,RPL35,ARPC5L,SUGP1,PKIG,HCFC1R1,GCDH,MAP2K2,NIT2,CAPNS1,C16orf91,ATP5I,COX4I2,AP4B1,C22orf39,NSL1,ECSCR,G6PC3,VPS72,COMTD1,DHPS,RFC2,GCHFR,UBXN1,IGFLR1,SNTA1,TMEM9,DYRK4,TATDN3,NDUFB1,SRP14,PSMD4,EMC8,CDC34,LSM2,UBALD2,QTRT1,PSMA5,PTS,MRPL46,RBM42,ZSWIM7,CLTB,SAT2,THOC6,SCNM1,RHBDD3,S100A13,WDR13,BABAM1,SLC25A10,NMRAL1,DGAT1,THOP1,NQO2,ENDOG,PARK7,GLO1,C19orf44,PPP2R1A,ITPA,CEP89,TIMM17B,FBXW9,COQ3,COX14,C6orf203,BANF1,HSCB,NTMT1,ELAC1,RWDD2B,ABHD14B,TRIOBP,NR2C2AP,TRAPPC4,ARIH2OS,RBP7,UBOX5,UBA52,ANKRD39,SGSM3,REEP2,SULT1A1,METTL12,NDUFAF1,C11orf98,GTF2A2,OXLD1,MRPS11,C1orf56,BCAT2,ING4,C7orf50,UBE2S,RNASEH2B,RPSA,TRIM27,PRR13,YIF1B,TIMM17A,KPTN,NDUFS5,PFN1,TRMT112,USMG5,CIRBP,KIAA2013
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.
Only predicted by TDF
KDELC2,JOSD1,LRP1,TAF1,VPRBP,SMARCA5,KIF16B,UTP20,LIMS1,USP32,WDR55,ATF1,STAT2,UBXN7,AP5M1,STAT6,SSH1,MFAP3,EXOC5,CHFR,DHX15,ARAP2,CDK13,BRD3,MED1,SRPK2,SRP72,CTDSP2,RPS6KA4,KIDINS220,COL4A3BP,DCLRE1B,OGDH,FAM102B,RP2,ELL,XPO4,REST,TUBGCP4,FER,CHD9,SLK,CRKL,DIEXF,FBXL20,ITPRIPL2,CPSF2,STAU1,FZD5,ACBD3,PLBD2,PFAS,XIAP,TNFRSF10A,TLK1,FNDC3B,PRRG1,ELF1,UEVLD,C2CD3,PATL1,HSPG2,ERC1,SEC24B,KDM5A,SETD7,UBAP2L,NCOA6,LONP2,RPAP1,GCN1,MOB1A,CLIP1,IPPK,TAF2,RSPRY1,SEC31A,SIN3B,RBBP8,SERINC5,CSNK1A1,SGTB,NFX1,WAPL,RALGAPA1,SPATA2,ATP10D,KDM4A,RLIM,WDR43,IRAK2,RAB6A,ACACA,SF3A1,BRWD3,CBFB,ITCH,FBXO11,UHRF1BP1L,YME1L1,ARID1A,PMS2,THAP9,RAB10,RIF1,FOXN2,PLEKHM1,MET,PTPN12,USP28,MAU2,NARS,GIT2,AKAP1,CDC23,NLN,LMTK2,TFCP2,FASTKD5
Exist in public source
NA

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lncRNA-RNA interaction for ZSCAN16-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
NIPAL1,AP5M1,ARID1A,RNF123,RBBP6,RFX7,ATM,SBNO2,TAF4,TNPO3,QSER1,GNL3L,TRIP11,CAD,KIAA1109,STAU2,EIF4G1,PTK2,FCHO2,CREBBP,HTT,SRRM2,TRAK1,ANKRD28,VPS13B,UBAP2,SRP72,RAD21,RAD18,SACM1L,OSGIN2,TDG,PRRC2C,ATP11B,PDPK1,WWP1,CEP120,PAK2,NOL8,TRAK2,CPEB4,LONP2,STRN,SLFN5,RPRD1B,DENND2B,PTPRE,CYLD,TMEM87A,MVP,RNF31,KCTD5,BTBD10,PCDH1,GANAB,SEC23A,MKLN1,CSNK1E,MFSD9,TXNRD1,CLEC16A,ITSN2,SLTM,MTMR12,PSD3,RAB35,RB1CC1,KLF13,SMAD1,KIF21A,BORA,MYCBP2,FAM102B,GPD2,SNRNP200,SGPL1,KNTC1,RHBDF1,GTF3C3,UVRAG,OSBPL8,RNF145,NUP107,SLC9A1,LDLR,UBAP2L,KDM2A,ACTR2,FRMD8,GPATCH8,ALMS1,ABL2,RPAP1,TUT7,SEC23B,MET,MED1,GTF2I,CNOT6L,EIF4G2,PLEKHA7,CDK13,CDC23,ARAP1,CUL2,CAB39,HUWE1,WASHC4,MIS18BP1,CALU,TEP1,MBOAT1,GOLGB1,DCAF5,SH3PXD2B,INTS8,DPP8,SUCO,FNDC3B,ATF1,NDE1,UBFD1,ARHGAP32,HERC1,SPOPL,KATNIP,POLG,NOMO2,HMGCR,TMEM87B,PHF6,FAM53C,SINHCAF,NBEAL2,SLC36A1,VPS4B,UHRF1BP1L,ADCY7,CHP1,PMM2,LAMA5,POGLUT3,USF3,KHNYN,SIPA1L1,MLXIP,MICAL3,MBNL1,LARP1,UBXN7,DAB2IP,EDC4,PTPN23,RNF214,SLAIN2,PPAT,ATP6V0C,PDXDC1,GPATCH2L,ARIH1,PARP8,FNDC3A,PUM1,TJP2,SEC24B,SUSD1,FOXN2,SLC38A1,FAM91A1,MCU,KMT2D,CTNNB1,BCL2L13,ANAPC1,AP3D1,MON2,RNF111,TP53BP1,VPS37A,TUBGCP4,AUTS2,MYH14,USP32,ZDHHC5,MANBA,SCRIB,SNX30,ARHGAP27,GIGYF2,DHX38,TFCP2,WBP11,DOP1B,DNMT1,DDX23,POLR1A,AFF4,DDX3X,ASXL2,NIPBL,PHF8,POLR2B,ESF1,FRYL,CEP350,LMBR1,HIPK2,PIKFYVE,HELZ2,DDHD2,EGFR,MAGI1,MYOF,HSPG2,NFX1,SLC10A7,GNPTAB,C16orf70,MED13,RUBCN,KDSR,ARF3,ZNF525,EP400,ERO1A,NUP98,DDX60,ZCCHC14,PLBD2,SRPK2,PDCD6IP,CHD2,GTF2A1,NPC1,TM9SF4,TFIP11,DPP9,PRKAA1,SOS1,SLC12A6,MORC3,CSNK1A1,SIN3B,EHMT1,PHF20L1,MIEF1,CDCP1,UGGT1,VRK2,TAF2,PRRG4,PLAA,AKAP1,RALGAPA2,FEM1B,ALPK1,RUSF1,THOC2,CELF1,SAMD4B,CTDSP2,OAS3,ZDHHC7,TAF5L,MST1R,SCAF11,CDH1,CNOT1,TMEM170A,CAMSAP2,SLC35E1,TRAP1,PCNX4,MYH9,SLC11A2,USP15,SERINC5,YPEL2,NUP155,FAM83B,SECISBP2L,DAG1,UBR1,PCDHGC3,CHD8,NOP9,TAOK3,MED14,HPS3,SLC37A3,DEPDC5,PRDM2,IARS1,ARHGAP21,SAMD12,UBE4A,ERBIN,ATL2,ANKRD11,ENTPD4,RHBDF2,SMC4,TSPAN14,VGLL4,LIMA1,SPRED2,KTN1,MFSD6,TTLL4,PLEKHM1,FBXO38,ATXN2L,USP28,SGMS1,HEG1,ATF7IP,AP2A1,TTC17,LRCH4,SEPTIN11,ELK1,CAPN15,CLIP1,NSUN3,SART3,CORO1C,RAD50,EHBP1L1,RAI1,NCOA2,RC3H2,UNKL,PRR14L,MAPK1,RNF169,NOM1,TRIM35,ACACA,USP42,TBC1D2B,RAI14,RAB11FIP1,LARP4,USP9X,ZBED6,ZC3H18,NUP62,UEVLD,KDM5C,YWHAZ,MTMR1,CPEB2,PPP4R2,TTF2,RBM33,RNF44,SMCHD1,MAP4K4,MGAT4B,GOLGA2,NID2,CBFA2T2,USP7,RABGAP1,NFAT5,KIF2A,OSBPL3,EIF3L,KDM2B,EMSY,PTBP1,DYNC1H1,CS,JOSD1,POLK,RANBP2,ACTN4,BRF2,DPY19L1,DYRK1A,AFF1,ABCE1,CARM1,USP8,PICALM,AGO2,CASP3,USP14,DOCK6,SMC6,SPG11,INPP4A,GLYR1,ZNFX1,ZNF91,RALGAPA1,FER,BAZ1A,NRDC,MARK2,GSK3B,MAPKAPK5,TAX1BP1,AEBP2,CEP170,GOLGA3,RNF4,CCNG2,BARD1,ARHGAP26,RNF40,LIMS1,QTRT2,CARNMT1,INPPL1,PSEN1,NSD3,INTS6,APC,APLP2,PTPN11,WDR36,SCYL2,MCM3AP,PLEKHB2,GPSM2,ZNF17,DIP2A,PALB2,NSUN2,ATRN,AP1AR,GLG1,OTUD6B,FRMD6,ATP2A2,DIAPH2,ANKRD50,PTPN12,M6PR,APAF1,TAF1,THAP9,PCNX1,DMXL2,VIRMA,ZNF720,IQGAP1,CMTR2,BPTF,ARHGAP5,CLCC1,CBFB,SKIL,CSNK2A1,RRBP1,IKBKG,NAV2,UBN1,COPB2,STIM1,SETD5,NIPA2,WWP2,SCARB2,PCM1,PDLIM5,DYNC1LI2,KBTBD4,MIDEAS,C2CD3,ZNF106,RASA1,CERT1,POLR3E,PTPRF,MAP4,MBTPS1,SWAP70,KDM6A,MED13L,SF3A1,PHC3,MYO10,DDB1,SERINC3,SQLE,DOCK9,SBF2,ITGA6,GGA3,GOLGA4,ABCA1,ERC1,TNPO1,GTPBP1,MGRN1,PPP4R1,USP31,SPTLC1,PLEKHA8,CSNK1G3,CAPN1,BIRC6,SEC31A,CYFIP1,TRAF3,LSM12,LONRF1,TMEM184C,LRP1,TOP1,BCOR,BDP1,SYNRG,SCAF4,EIF2AK4,USP10,AHNAK,PHRF1,TRAF7,RBBP8,ERBB3
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000269293ENST00000602810exon_skip_33516chr1:156938417-156938513-13.83-0.1666ARHGEF11ENST00000361409In-frame
ENSG00000269293ENST00000602810exon_skip_293641chr17:76091142-76091235-10.49-0.1499EXOC7ENST00000589210In-frame
ENSG00000269293ENST00000602810exon_skip_421737chr4:3428557-3428711-14.01-0.1008RGS12ENST00000336727,ENST00000344733Frame-shift

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000269293ENST00000600652exon_skip_291984chr17:59119318-59119495-16.43-0.1033SKA2ENST00000330137In-frame
ENSG00000269293ENST00000602810exon_skip_360302chr21:42896926-42897047-13.31-0.1199NDUFV3ENST00000340344Frame-shift
ENSG00000269293ENST00000602810exon_skip_430434chr4:82356536-82356683-15.08-0.1267HNRNPDENST00000313899In-frame
ENSG00000269293ENST00000602810exon_skip_11286chr1:155061903-155061975-17.20-0.3127ADAM15ENST00000356955In-frame
ENSG00000269293ENST00000602810exon_skip_14329chr1:178892229-178892307-11.23-0.1755RALGPS2ENST00000367635In-frame
ENSG00000269293ENST00000602810exon_skip_44853chr10:104010815-104010908-10.53-0.1549SLKENST00000369755In-frame
ENSG00000269293ENST00000602810exon_skip_98384chr12:124327408-124327633-20.43-0.1318NCOR2ENST00000405201In-frame
ENSG00000269293ENST00000602810exon_skip_114200chr14:73279280-73279424-17.12-0.1307NUMBENST00000355058,ENST00000555238In-frame
ENSG00000269293ENST00000602810exon_skip_132355chr16:1786756-1786955-22.37-0.1271NUBP2ENST00000262302Frame-shift
ENSG00000269293ENST00000602810exon_skip_148110chr17:4892401-4892512-14.94-0.1540MINK1ENST00000355280In-frame
ENSG00000269293ENST00000602810exon_skip_303809chr19:18431352-18431418-11.37-0.2187SSBP4ENST00000270061In-frame
ENSG00000269293ENST00000602810exon_skip_324294chr2:27774423-27774530-14.26-0.1658MRPL33ENST00000296102Frame-shift
ENSG00000269293ENST00000602810exon_skip_374375chr3:49675182-49675309-16.71-0.1441APEHENST00000296456Frame-shift
ENSG00000269293ENST00000602810exon_skip_378912chr3:152446703-152446757-10.32-0.2293MBNL1ENST00000282486,ENST00000463374In-frame
ENSG00000269293ENST00000602810exon_skip_439146chr5:154950820-154950938-11.19-0.1066MRPL22ENST00000523037Frame-shift
ENSG00000269293ENST00000602810exon_skip_95500chr12:96003837-96003920-7.94-0.1059LTA4HENST00000228740Frame-shift
ENSG00000269293ENST00000602810exon_skip_494079chr8:144099080-144099205-18.41-0.1705SHARPINENST00000398712Frame-shift
ENSG00000269293ENST00000602810exon_skip_111510chr14:22952540-22952683-12.80-0.1243HAUS4ENST00000206474,ENST00000541587Frame-shift
ENSG00000269293ENST00000602810exon_skip_326741chr2:73946718-73946906-15.46-0.1154DGUOKENST00000264093Frame-shift
ENSG00000269293ENST00000602810exon_skip_29583chr1:114780109-114780215-11.56-0.1257SIKE1ENST00000060969Frame-shift
ENSG00000269293ENST00000602810exon_skip_140232chr16:634888-634956-15.19-0.2302METTL26ENST00000301686Frame-shift
ENSG00000269293ENST00000602810exon_skip_372239chr3:28263290-28263380-11.11-0.1949CMC1ENST00000466830In-frame
ENSG00000269293ENST00000602810exon_skip_382100chr3:25720013-25720191-13.29-0.1007NGLY1ENST00000280700Frame-shift
ENSG00000269293ENST00000602810exon_skip_350485chr20:34073818-34073866-12.84-0.3776RALYENST00000246194In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for ZSCAN16-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000269293ENSG00000060762MPC1ACC,CHOL,GBM,KICH,KIRP,LAML,TGCT,THCACHOL
ENSG00000269293ENSG00000092841MYL6ACC,BLCA,BRCA,CESC,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,READ,SARC,STAD,TGCT,THCA,THYM,UCEC,UCSREAD,STAD
ENSG00000269293ENSG00000104823ECH1ACC,BRCA,CHOL,DLBC,HNSC,KICH,LGG,LIHC,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000125652ALKBH7ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCSCHOL
ENSG00000269293ENSG00000130717UCK1ACC,BLCA,BRCA,CHOL,COAD,DLBC,HNSC,KIRP,LGG,PAAD,READ,THCA,THYMCHOL
ENSG00000269293ENSG00000130770ATP5IF1ACC,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,THCA,THYM,UCSCHOL
ENSG00000269293ENSG00000132423COQ3ACC,CHOL,GBM,KIRP,LGG,PAAD,THCA,THYMCHOL
ENSG00000269293ENSG00000135617PRADC1ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,TGCT,THCA,THYM,UCECCHOL,READ
ENSG00000269293ENSG00000137171KLC4ACC,CHOL,DLBC,HNSC,KICH,SKCM,TGCT,THCA,UVMCHOL
ENSG00000269293ENSG00000138495COX17ACC,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KIRP,LAML,LGG,LIHC,OV,PAAD,SARC,THCA,THYM,UVMCHOL
ENSG00000269293ENSG00000154723ATP5PFACC,BLCA,BRCA,CESC,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,STAD,THCA,THYM,UCECREAD,STAD
ENSG00000269293ENSG00000159388BTG2ACC,ESCA,KICH,STAD,TGCTSTAD
ENSG00000269293ENSG00000159884CCDC107ACC,BLCA,BRCA,COAD,DLBC,GBM,KIRP,LGG,STAD,TGCT,THCA,THYMSTAD
ENSG00000269293ENSG00000170270GON7ACC,BLCA,CHOL,GBM,KICH,PAAD,READ,TGCT,THCA,THYMREAD
ENSG00000269293ENSG00000179085DPM3ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCS,UVMCHOL
ENSG00000269293ENSG00000182512GLRX5ACC,BLCA,CHOL,DLBC,HNSC,KIRP,THCA,THYM,UCSCHOL
ENSG00000269293ENSG00000183617MRPL54ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCSCHOL
ENSG00000269293ENSG00000183648NDUFB1ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCSCHOL,READ
ENSG00000269293ENSG00000198721ECI2ACC,BLCA,BRCA,CHOL,GBM,HNSC,KICH,LGG,LIHC,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000023902PLEKHO1BLCA,CESC,COAD,ESCA,HNSC,LGG,READ,STAD,TGCT,THYM,UCEC,UCSREAD,STAD
ENSG00000269293ENSG00000082014SMARCD3BLCA,COAD,ESCA,GBM,HNSC,PAAD,READ,STAD,TGCT,THCAREAD,STAD
ENSG00000269293ENSG00000101400SNTA1BLCA,BRCA,DLBC,HNSC,PAAD,STAD,TGCT,THCA,UCECSTAD
ENSG00000269293ENSG00000105270CLIP3BLCA,COAD,KICH,PAAD,STAD,TGCT,THYMSTAD
ENSG00000269293ENSG00000106400ZNHIT1BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCSCHOL
ENSG00000269293ENSG00000118292C1orf54BLCA,BRCA,CESC,COAD,GBM,HNSC,KICH,KIRP,READ,SARC,STAD,TGCT,UCSREAD
ENSG00000269293ENSG00000128185DGCR6LBLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,SARC,TGCT,THCA,THYM,UCECCHOL
ENSG00000269293ENSG00000128266GNAZBLCA,ESCA,KICH,PAAD,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000132563REEP2BLCA,DLBC,PAAD,STAD,TGCTSTAD
ENSG00000269293ENSG00000137880GCHFRBLCA,BRCA,CESC,CHOL,DLBC,KICH,READ,THYMCHOL
ENSG00000269293ENSG00000142227EMP3BLCA,BRCA,COAD,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000154277UCHL1BLCA,COAD,KICH,PAAD,READREAD
ENSG00000269293ENSG00000160408ST6GALNAC6BLCA,BRCA,KICH,KIRC,PAAD,STAD,TGCTSTAD
ENSG00000269293ENSG00000165698SPACA9BLCA,COAD,DLBC,KICH,PAAD,READ,STAD,TGCT,THCA,THYMSTAD
ENSG00000269293ENSG00000166313APBB1BLCA,COAD,HNSC,KICH,PAAD,STAD,TGCTSTAD
ENSG00000269293ENSG00000168273SMIM4BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,THCA,THYM,UCEC,UCS,UVMCHOL
ENSG00000269293ENSG00000171119NRTNBLCA,CHOL,PAAD,SARC,TGCTCHOL
ENSG00000269293ENSG00000176533GNG7BLCA,KICH,PAAD,STAD,TGCT,THCASTAD
ENSG00000269293ENSG00000176894PXMP2BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,LAML,LGG,READ,TGCT,THCA,THYM,UCECCHOL,READ
ENSG00000269293ENSG00000177556ATOX1BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCSCHOL
ENSG00000269293ENSG00000184113CLDN5BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRC,PAAD,SARC,STAD,TGCT,THCASTAD
ENSG00000269293ENSG00000203778FAM229BBLCA,CESC,DLBC,ESCA,GBM,HNSC,KICH,KIRP,OV,PAAD,STAD,TGCT,THCA,THYM,UCSSTAD
ENSG00000269293ENSG00000220205VAMP2BLCA,DLBC,ESCA,HNSC,KICH,LAML,PAAD,STAD,TGCTSTAD
ENSG00000269293ENSG00000249751ECSCRBLCA,BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRC,LIHC,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UCECREAD
ENSG00000269293ENSG00000005243COPZ2BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRP,STAD,TGCT,THCASTAD
ENSG00000269293ENSG00000010256UQCRC1BRCA,CESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,LIHC,SARC,THCA,THYMCHOL
ENSG00000269293ENSG00000053371AKR7A2BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,LGG,LIHC,PAAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCSCHOL
ENSG00000269293ENSG00000063241ISOC2BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,LGG,LIHC,READ,SARC,THCA,THYM,UCECCHOL
ENSG00000269293ENSG00000114779ABHD14BBRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,SARC,SKCM,TGCT,THCA,THYM,UVMCHOL
ENSG00000269293ENSG00000126458RRASBRCA,GBM,KICH,LGG,STAD,TGCTSTAD
ENSG00000269293ENSG00000127884ECHS1BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,LGG,READ,SARC,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000128309MPSTBRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,SARC,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000130312MRPL34BRCA,CHOL,DLBC,ESCA,GBM,HNSC,KIRP,LAML,LGG,PAAD,THCA,THYM,UCSCHOL
ENSG00000269293ENSG00000132394EEFSECBRCA,CHOL,DLBC,HNSC,TGCT,THCA,THYM,UCS,UVMCHOL
ENSG00000269293ENSG00000141295SCRN2BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,LGG,LIHC,PAAD,SARC,TGCT,THCA,THYM,UVMCHOL
ENSG00000269293ENSG00000167705RILPBRCA,CHOL,GBM,HNSC,KIRP,SARC,THCACHOL
ENSG00000269293ENSG00000173141MRPL57BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,SARC,THCA,THYM,UCSCHOL
ENSG00000269293ENSG00000175938ORAI3BRCA,CESC,CHOL,DLBC,LAML,LGG,OV,SARC,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000242612DECR2BRCA,CESC,CHOL,HNSC,KICH,LGG,LIHC,THCACHOL
ENSG00000269293ENSG00000248487ABHD14ABRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYMCHOL
ENSG00000269293ENSG00000100075SLC25A1CESC,CHOL,DLBC,HNSC,KIRC,LIHC,SARC,THCA,THYMCHOL
ENSG00000269293ENSG00000127838PNKDCESC,CHOL,GBM,KICH,KIRC,SARC,THCA,THYMCHOL
ENSG00000269293ENSG00000147155EBPCESC,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,LIHC,THCA,THYM,UCEC,UVMCHOL
ENSG00000269293ENSG00000196502SULT1A1CESC,CHOL,DLBC,KICH,THCA,THYMCHOL
ENSG00000269293ENSG00000204219TCEA3CESC,CHOL,HNSC,KICH,KIRP,LIHC,SARC,TGCT,THCACHOL
ENSG00000269293ENSG00000213563C8orf82CESC,CHOL,DLBC,HNSC,KIRP,LGG,LIHC,SARC,THCA,THYMCHOL
ENSG00000269293ENSG00000024862CCDC28ACHOL,GBM,KICH,KIRP,PAAD,THCACHOL
ENSG00000269293ENSG00000078967UBE2D4CHOL,GBM,HNSC,LIHC,PAAD,STAD,TGCT,THCACHOL
ENSG00000269293ENSG00000102796DHRS12CHOL,KICH,KIRP,PAAD,THCACHOL
ENSG00000269293ENSG00000112294ALDH5A1CHOL,KICH,PAAD,TGCT,UVMCHOL
ENSG00000269293ENSG00000116685KIAA2013CHOL,DLBC,HNSC,KICH,THYMCHOL
ENSG00000269293ENSG00000117640MTFR1LCHOL,COAD,GBM,HNSC,KICH,PAAD,STAD,TGCT,THCACHOL,STAD
ENSG00000269293ENSG00000128609NDUFA5CHOL,GBM,KIRP,PAAD,THCACHOL
ENSG00000269293ENSG00000137070IL11RACHOL,ESCA,HNSC,KICH,PAAD,STAD,TGCT,THCASTAD
ENSG00000269293ENSG00000139684ESDCHOL,GBM,KICH,TGCT,THYMCHOL
ENSG00000269293ENSG00000148832PAOXCHOL,KICH,KIRC,SARC,TGCTCHOL
ENSG00000269293ENSG00000163541SUCLG1CHOL,DLBC,GBM,KICH,KIRP,LGG,THCA,THYM,UVMCHOL
ENSG00000269293ENSG00000165688PMPCACHOL,DLBC,HNSC,KIRC,KIRP,LGG,PAAD,READ,SARC,THCA,THYMCHOL
ENSG00000269293ENSG00000167701GPTCHOL,KIRC,LGG,READ,THCACHOL,READ
ENSG00000269293ENSG00000185000DGAT1CHOL,DLBC,HNSC,THCA,THYMCHOL
ENSG00000269293ENSG00000197568HHLA3CHOL,DLBC,KICH,LGG,THCA,UCSCHOL
ENSG00000269293ENSG00000198736MSRB1CHOL,GBM,KICH,LGG,THCACHOL
ENSG00000269293ENSG00000211445GPX3CHOL,COAD,KICH,PAAD,THCACHOL
ENSG00000269293ENSG00000224051CPTPCHOL,LGG,TGCT,THCA,UCSCHOL
ENSG00000269293ENSG00000011465DCNCOAD,KICH,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000059915PSDCOAD,PAAD,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000063180CA11COAD,KICH,PAAD,SARC,STAD,TGCTSTAD
ENSG00000269293ENSG00000072163LIMS2COAD,DLBC,KICH,KIRC,STAD,TGCT,THCA,THYM,UVMSTAD
ENSG00000269293ENSG00000101335MYL9COAD,HNSC,KICH,READ,STAD,TGCT,THCAREAD,STAD
ENSG00000269293ENSG00000119865CNRIP1COAD,KICH,PAAD,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000148908RGS10COAD,DLBC,GBM,READ,SARC,THYMREAD
ENSG00000269293ENSG00000160307S100BCOAD,GBM,PAAD,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000167641PPP1R14ACOAD,HNSC,KICH,KIRC,READ,STAD,THCAREAD,STAD
ENSG00000269293ENSG00000185437SH3BGRCOAD,ESCA,GBM,KICH,KIRP,PAAD,STAD,THCASTAD
ENSG00000269293ENSG00000198467TPM2COAD,DLBC,READ,STAD,TGCTREAD,STAD
ENSG00000269293ENSG00000144199FAHD2BDLBC,GBM,KICH,STAD,UCEC,UVMSTAD
ENSG00000269293ENSG00000163815CLEC3BDLBC,PAAD,READ,STAD,THCAREAD,STAD
ENSG00000269293ENSG00000241644INMTDLBC,GBM,KICH,KIRC,STAD,TGCTSTAD
ENSG00000269293ENSG00000103202NME4ESCA,GBM,HNSC,LGG,OV,STAD,TGCT,THCA,THYMSTAD
ENSG00000269293ENSG00000235098ANKRD65ESCA,KICH,PAAD,STAD,TGCTSTAD
ENSG00000269293ENSG00000134202GSTM3GBM,KICH,READ,TGCT,THCAREAD
ENSG00000269293ENSG00000205758CRYZL1GBM,HNSC,KICH,READ,STADREAD
ENSG00000269293ENSG00000150281CTF1HNSC,KICH,STAD,TGCT,UCSSTAD
ENSG00000269293ENSG00000100079LGALS2KICH,KIRC,KIRP,READ,TGCT,THYMREAD
ENSG00000269293ENSG00000160191PDE9AKICH,LGG,PAAD,SARC,STAD,TGCT,THYMSTAD

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000269293ENSG00000136630HLXENSG00000249751ECSCR5BLCA,BRCA,COAD,HNSC,TGCT

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000269293ENST00000600652KIF2AENSG00000068796ENST00000401507-0.1439107CHOL-
ENSG00000269293ENST00000600652KIF2AENSG00000068796ENST00000407818-0.2030150CHOL-
ENSG00000269293ENST00000600652KIF2AENSG00000068796ENST00000506857-0.1060150CHOL-
ENSG00000269293ENST00000600652RASAL2ENSG00000075391ENST00000367649-0.1030125CHOL-
ENSG00000269293ENST00000602810KIF2AENSG00000068796ENST00000401507-0.1358793CHOL-
ENSG00000269293ENST00000602810KIF2AENSG00000068796ENST00000407818-3.405066CHOL-
ENSG00000269293ENST00000602810RASAL2ENSG00000075391ENST00000367649-0.124544CHOL-
ENSG00000269293ENST00000600652CAMSAP2ENSG00000118200ENST00000413307-0.2127219CHOL-
ENSG00000269293ENST00000600652SLC36A1ENSG00000123643ENST00000520701-0.16831CHOL-
ENSG00000269293ENST00000600652SLC36A1ENSG00000123643ENST00000429484-0.1422518CHOL-
ENSG00000269293ENST00000600652SLC36A1ENSG00000123643ENST00000616007-0.1667731CHOL-
ENSG00000269293ENST00000600652SLC36A1ENSG00000123643ENST00000517628-0.1373684CHOL-
ENSG00000269293ENST00000600652SLC36A1ENSG00000123643ENST00000522185-0.11201CHOL-
ENSG00000269293ENST00000602810TTF2ENSG00000116830ENST00000369466-0.12701CHOL-
ENSG00000269293ENST00000602810CAMSAP2ENSG00000118200ENST00000413307-0.137447CHOL-
ENSG00000269293ENST00000602810SLC36A1ENSG00000123643ENST00000429484-0.138170CHOL-
ENSG00000269293ENST00000602810SLC36A1ENSG00000123643ENST00000616007-0.22051178CHOL-
ENSG00000269293ENST00000602810SLC36A1ENSG00000123643ENST00000521925-0.10581CHOL-
ENSG00000269293ENST00000602810SLC36A1ENSG00000123643ENST00000517628-0.17861178CHOL-
ENSG00000269293ENST00000600652TAF4ENSG00000130699ENST00000474089-0.143535READ-
ENSG00000269293ENST00000600652IQGAP1ENSG00000140575ENST00000560373-0.5006144CHOL-
ENSG00000269293ENST00000602810TAF4ENSG00000130699ENST00000474089-0.1183681READ-
ENSG00000269293ENST00000602810IQGAP1ENSG00000140575ENST00000559809-0.14501CHOL-
ENSG00000269293ENST00000602810IQGAP1ENSG00000140575ENST00000560373-3.5650898CHOL-
ENSG00000269293ENST00000600652ABL2ENSG00000143322ENST00000512653-0.1276525CHOL-
ENSG00000269293ENST00000600652CEP170ENSG00000143702ENST00000490813-0.11491630CHOL-
ENSG00000269293ENST00000600652VGLL4ENSG00000144560ENST00000451674-0.1007227CHOL-
ENSG00000269293ENST00000600652VGLL4ENSG00000144560ENST00000424529-0.1511676CHOL-
ENSG00000269293ENST00000600652VGLL4ENSG00000144560ENST00000426568-0.2375682CHOL-
ENSG00000269293ENST00000600652VGLL4ENSG00000144560ENST00000430365-0.2375682CHOL-
ENSG00000269293ENST00000602810ABL2ENSG00000143322ENST00000512653-0.1198162CHOL-
ENSG00000269293ENST00000602810ABL2ENSG00000143322ENST00000392043-0.10491CHOL-
ENSG00000269293ENST00000602810CEP170ENSG00000143702ENST00000490813-0.11491006CHOL-
ENSG00000269293ENST00000602810VGLL4ENSG00000144560ENST00000451674-0.1148884CHOL-
ENSG00000269293ENST00000602810VGLL4ENSG00000144560ENST00000424529-0.17591043CHOL-
ENSG00000269293ENST00000602810VGLL4ENSG00000144560ENST00000426568-0.17591043CHOL-
ENSG00000269293ENST00000602810VGLL4ENSG00000144560ENST00000430365-0.17591043CHOL-
ENSG00000269293ENST00000600652FAM91A1ENSG00000176853ENST00000521166-0.1086705STAD-
ENSG00000269293ENST00000600652AFAP1ENSG00000196526ENST00000382543-0.1445707CHOL-
ENSG00000269293ENST00000602810FAM91A1ENSG00000176853ENST00000521166-0.1494187STAD-
ENSG00000269293ENST00000602810AFAP1ENSG00000196526ENST00000382543-0.1552281CHOL-
ENSG00000269293ENST00000602810AFAP1ENSG00000196526ENST00000614385-0.148185CHOL-
ENSG00000269293ENST00000600652CAPN1ENSG00000014216ENST00000526954-0.1726202CHOL-
ENSG00000269293ENST00000602810CAPN1ENSG00000014216ENST00000526954-0.1614795CHOL-
ENSG00000269293ENST00000600652RHBDF1ENSG00000007384ENST00000448893-0.118718CHOL,READ-
ENSG00000269293ENST00000600652KATNIPENSG00000047578ENST00000618117-0.1732200CHOL-
ENSG00000269293ENST00000600652TP53BP1ENSG00000067369ENST00000434561-0.13581312CHOL-
ENSG00000269293ENST00000600652TP53BP1ENSG00000067369ENST00000467474-0.1392825CHOL-
ENSG00000269293ENST00000600652CADENSG00000084774ENST00000428460-0.226768CHOL,STAD,READ-
ENSG00000269293ENST00000600652SUCOENSG00000094975ENST00000610051-0.62671767CHOL-
ENSG00000269293ENST00000602810RHBDF1ENSG00000007384ENST00000448893-0.119254CHOL,READ-
ENSG00000269293ENST00000602810KATNIPENSG00000047578ENST00000618117-0.20601017CHOL-
ENSG00000269293ENST00000602810TP53BP1ENSG00000067369ENST00000434561-0.1358688CHOL-
ENSG00000269293ENST00000602810TP53BP1ENSG00000067369ENST00000467474-0.1392201CHOL-
ENSG00000269293ENST00000602810CADENSG00000084774ENST00000428460-0.164644CHOL,STAD,READ-
ENSG00000269293ENST00000602810SUCOENSG00000094975ENST00000610051-0.62671143CHOL-
ENSG00000269293ENST00000600652RAI1ENSG00000108557ENST00000583166-0.47001565CHOL-
ENSG00000269293ENST00000600652GPD2ENSG00000115159ENST00000438166-0.1280240CHOL-
ENSG00000269293ENST00000600652GPD2ENSG00000115159ENST00000409674-0.1280240CHOL-
ENSG00000269293ENST00000602810TMEM87AENSG00000103978ENST00000448392-0.15301CHOL-
ENSG00000269293ENST00000602810TMEM87AENSG00000103978ENST00000389834-0.15301CHOL-
ENSG00000269293ENST00000602810TMEM87AENSG00000103978ENST00000307216-0.10641CHOL-
ENSG00000269293ENST00000602810RAI1ENSG00000108557ENST00000583166-0.4700941CHOL-
ENSG00000269293ENST00000602810GPD2ENSG00000115159ENST00000438166-0.123811CHOL-
ENSG00000269293ENST00000602810GPD2ENSG00000115159ENST00000409674-0.123811CHOL-
ENSG00000269293ENST00000600652LAMA5ENSG00000130702ENST00000474128-0.1013137CHOL-
ENSG00000269293ENST00000600652PTPREENSG00000132334ENST00000471218-2.5550296CHOL-
ENSG00000269293ENST00000600652PTPREENSG00000132334ENST00000467366-2.5550295CHOL-
ENSG00000269293ENST00000600652TTLL4ENSG00000135912ENST00000434241-0.152570CHOL,READ-
ENSG00000269293ENST00000600652TTLL4ENSG00000135912ENST00000417855-0.1549702CHOL,READ-
ENSG00000269293ENST00000600652CCNG2ENSG00000138764ENST00000395640-0.1281396CHOL-
ENSG00000269293ENST00000600652HSPG2ENSG00000142798ENST00000374676-0.1353140CHOL-
ENSG00000269293ENST00000600652HSPG2ENSG00000142798ENST00000412328-0.3200948CHOL-
ENSG00000269293ENST00000600652HSPG2ENSG00000142798ENST00000439717-0.3810972CHOL-
ENSG00000269293ENST00000602810PTPREENSG00000132334ENST00000471218-1.965077CHOL-
ENSG00000269293ENST00000602810PTPREENSG00000132334ENST00000467366-1.965076CHOL-
ENSG00000269293ENST00000602810TTLL4ENSG00000135912ENST00000434241-0.116855CHOL,READ-
ENSG00000269293ENST00000602810TTLL4ENSG00000135912ENST00000417855-0.179797CHOL,READ-
ENSG00000269293ENST00000602810CCNG2ENSG00000138764ENST00000502280-0.13821CHOL-
ENSG00000269293ENST00000602810CCNG2ENSG00000138764ENST00000395640-0.13821CHOL-
ENSG00000269293ENST00000602810HSPG2ENSG00000142798ENST00000374676-0.504316CHOL-
ENSG00000269293ENST00000602810HSPG2ENSG00000142798ENST00000412328-0.3200324CHOL-
ENSG00000269293ENST00000602810HSPG2ENSG00000142798ENST00000439717-0.3810348CHOL-
ENSG00000269293ENST00000600652MYO10ENSG00000145555ENST00000515803-0.1278110CHOL-
ENSG00000269293ENST00000600652MYO10ENSG00000145555ENST00000505695-0.161694CHOL-
ENSG00000269293ENST00000600652FERENSG00000151422ENST00000438717-0.145415CHOL-
ENSG00000269293ENST00000600652MST1RENSG00000164078ENST00000296474-0.11561CHOL-
ENSG00000269293ENST00000600652MST1RENSG00000164078ENST00000621387-0.11561CHOL-
ENSG00000269293ENST00000600652MST1RENSG00000164078ENST00000612032-0.11561CHOL-
ENSG00000269293ENST00000600652MST1RENSG00000164078ENST00000613534-0.11561CHOL-
ENSG00000269293ENST00000600652MST1RENSG00000164078ENST00000344206-0.1444141CHOL-
ENSG00000269293ENST00000602810MYO10ENSG00000145555ENST00000505695-0.1642323CHOL-
ENSG00000269293ENST00000602810FERENSG00000151422ENST00000438717-0.1282296CHOL-
ENSG00000269293ENST00000602810MFSD6ENSG00000151690ENST00000412482-0.108522CHOL-
ENSG00000269293ENST00000602810MST1RENSG00000164078ENST00000344206-0.1276330CHOL-
ENSG00000269293ENST00000600652FAM83BENSG00000168143ENST00000306858-0.66001301CHOL-
ENSG00000269293ENST00000600652SH3PXD2BENSG00000174705ENST00000519643-0.1163945CHOL-
ENSG00000269293ENST00000600652SH3PXD2BENSG00000174705ENST00000518522-0.12421CHOL-
ENSG00000269293ENST00000602810FAM83BENSG00000168143ENST00000306858-0.6600677CHOL-
ENSG00000269293ENST00000602810SH3PXD2BENSG00000174705ENST00000519643-0.1163321CHOL-
ENSG00000269293ENST00000600652CSNK1EENSG00000213923ENST00000431632-0.122483CHOL-
ENSG00000269293ENST00000600652CSNK1EENSG00000213923ENST00000403904-0.351714CHOL-
ENSG00000269293ENST00000600652CSNK1EENSG00000213923ENST00000451964-0.2476102CHOL-
ENSG00000269293ENST00000602810CSNK1EENSG00000213923ENST00000431632-0.1045797CHOL-
ENSG00000269293ENST00000602810CSNK1EENSG00000213923ENST00000403904-0.213599CHOL-
ENSG00000269293ENST00000602810CSNK1EENSG00000213923ENST00000431611-0.10481CHOL-
ENSG00000269293ENST00000602810CSNK1EENSG00000213923ENST00000405675-0.14651CHOL-
ENSG00000269293ENST00000602810CSNK1EENSG00000213923ENST00000451964-0.281257CHOL-
ENSG00000269293ENST00000600652SLC38A1ENSG00000111371ENST00000552197-0.108684CHOL-
ENSG00000269293ENST00000600652MYOFENSG00000138119ENST00000371489-0.13491319CHOL-
ENSG00000269293ENST00000600652PTPRFENSG00000142949ENST00000412568-0.1058136CHOL-
ENSG00000269293ENST00000602810MYOFENSG00000138119ENST00000371489-0.1349695CHOL-
ENSG00000269293ENST00000602810PTPRFENSG00000142949ENST00000412568-0.101933CHOL-

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000269293.2ENST00000600652.198106402
ENSG00000269293.2ENST00000602810.11751422895