 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARL16,TCEA2,DOLK,ARFIP2,TUBGCP2,CTF1,PRPSAP2,THAP4,IFT22,POLD2,CIRBP,NUDT18,PSMB7,WDR83OS,C1orf56,SHARPIN,DPM2,DYNC2I2,SIRT3,CACFD1,PPP2R3B,HINT2,ACD,DPP7,MDH2,TMEM179B,XAB2,TIMM17B,MIEF2,FAM120AOS,PIGP,PIGW,PRKAR1B,STK16,TMEM203,WDR54,PPP1R37,APTX,TRAPPC2L,HIRIP3,FAAP20,COA3,SURF2,GMPR2,TPRN,CDIP1,COG4,NAA80,RNF167,CYB5D2,RCCD1,ERAL1,MPLKIP,RING1,SSU72,CEP89,GTF2F1,CBY1,ABHD14B,WDR83,MRRF,WDR5,GABPB1,DHPS,SLC48A1,CTU2,B3GALT6,DDX49,LMAN2L,INO80E,RBM42,CYSRT1,YJU2,TMEM101,C19orf54,C17orf97,ADCK2,ZBED8,BORCS6,BAG1,DDX51,FUZ,ESS2,PPP6C,FBXW4,MRPS2,TSEN54,MRPL57,TSSK6,FBXW9,SGTA,MOAP1,NOL3,APEH,RABL6,LNP1,RPA3,HEXD,EEFSEC,TUFM,GAS8,IDH3B,TOR2A,CCDC24,CCDC12,ILVBL,PEX10,EAPP,KIF12,RAB1B,RABEPK,ABHD8,MRPL52,MMAB,TRMO,GLI4,DNAJC4,CIZ1,SMYD5,DDX56,FAM98C,TECR,NICN1,SWI5,NDUFB11,NPRL3,NDUFAF3,C9orf78,FNDC10,MRPL49,MRPL28,CNPPD1,PHF7,COG8,DMAC2,UNC45A,LSM3,SURF1,NUBP2,PTGES2,LCMT1,C11orf68,METTL27,FIS1,MRPL24,SPACA9,MRM1,CDK20,UBL7,BAP1,NPDC1,NME4,ANAPC13,MEPCE,TBL3,TCTA,CCDC106,EMD,MED27,FBXO44,NELFE,NATD1,METTL23,EXD3,TBC1D10B,SLC38A10,P4HTM,PATZ1,TMEM109,MAF1,TUSC2,ALDOA,BRF1,PPP1R3F,PRR7,POLRMT,GATB,TMEM186,H2BC21,ZNF48,GALT,PEX11G,INPP5E,TRADD,KATNB1,IFI27L2,REXO4,SGF29,NEK8,MBD3,BCL7B,FIZ1,TATDN2,LTB4R,MRPS18B,VPS4A,CD2BP2,PCSK4,ALKBH4,MED29,DMAC1,C2orf68,FBXL8,TMEM134,CDIPT,ORAI3,MYL5,UBXN6,CUEDC2,UBAC1,SCAND1,PSME3IP1,TKFC,TCF25,GPSM1,UBXN11,HSPBP1,CCDC71,B9D1,PPCDC,USF2,PPP1R26,ATPAF2,AKR7A2,COPRS,CCDC51,TMEM187,SPAG7,MVD,PTPA,ENKD1,ZDHHC1,LRRC14,C11orf1,CTBP1,POMT1,WDR25,DALRD3,ARF5,PHF19,RBM23,VPS51,CDPF1,NUP214,NAT14,C1orf35,TIMM13,C7orf26,MARCHF9,NPRL2,ZCWPW1,SNX17,CCDC115,TOM1L2,HDAC11,INCA1,GFER,ZER1,RFNG,TP53I13,RAC3,SEC61B,COQ4,KYAT1,CHST14,DHRS12,SMU1,ZMAT5,ECI1,ARMC5,UBALD1,ACBD4,CREB3,TMEM223,RNPS1,ZBTB3,ENTR1,GLE1,TOR1A,SPATA2,ENDOV,BLCAP,SLC2A8,CHMP1A,TTC30A,ELP6,NDOR1,PSKH1,MZT2B,HIRA,DEAF1,HEXIM2,SCRN2,RNF208,ANKS3,ATRAID,NOXA1,GON7,UCK1,SMDT1,ANKRD54,TXNRD2,PARN,VMAC,ECSIT,GEMIN2,DDX31,TMUB2,ARFRP1,CIAO2B,MCRIP2,BRAT1,C19orf25,FAM234A,VPS33B,ZMYND19,TLE5,ABHD14A,KLHL22,TRMT61A,COA5,C14orf93,COQ9,LRSAM1,DPH7,UBE2M,APRT,GPS1,THTPA,IRF2BP1,SMIM19,WBP1,TMEM250,NDUFB10,EEF2KMT,NELFB,PRDX5,TAF6L,C15orf61,TMEM115,NDUFA13,CHCHD5,C7orf50,C1orf122,RCC1L,C16orf86,RRNAD1,AIMP2,KAT8,VAC14,HSBP1,FZR1,POLE3,RP11-523H20.5,NAGLU,MIF4GD,HSD17B8,ABCA2,ZNHIT2,BANF1,BCL7C,SLC25A1,ARPC5L,RABGGTA,CINP,LIN37,RECQL5,PHKG2,ASB6,SWSAP1,TBC1D17,ISCA1,GOLGA1,ARL3,NT5C3B,CENPT,G6PC3,PACS2,VAMP2,TUSC1,CUEDC1,GTPBP3,NUDT2,DBP,DNAJB2,ANAPC2,BEND5,TMEM143,STOML2,SURF6,ATP6V1F,RABAC1,GET3,DENND1A,AK8,PLEKHJ1,DYRK1B,TTLL1,PARD6A,TMEM129,ARMC6,NDUFB7,SDR39U1,PEX16,ETFB,MAPKAP1,HTRA2,LRRC29,WDR31,POLL,MED22,NSMF,STOML1,TIGD1,AP3S2,E2F4,FAHD1,MTFR1L,SPIN2B,VEGFB,PYCR3,TTC32,NDUFA8,FBXO31,SPATA2L,COASY,SPATA33,NDUFB6,TIMM29,EMC9,RABGAP1,MACROD1,SOX12,POLR2E,KLHDC3,NEDD8,TYSND1,DUSP28,BOLA1,TSR3,DNAJC5,GHDC,YPEL3,THAP8,NSMCE1,SF3B2,PIN1,DGCR6L,BSCL2,PMPCA,SH3GLB2,FASTK,DCAF11,MAPK3,USP20,EMC8,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | NPDC1,DPH7,C14orf93,YDJC,TBL3,GABPB1,VPS4A,POLRMT,PSMB5,ATP6V1F,COG4,G6PC3,TUSC1,MEPCE,DHPS,NT5C3B,PEX16,PEX11G,RABL6,EID2,C9orf69,PHF7,CDIP1,WBSCR27,E2F4,KLHL22,APEH,ENDOG,ECSIT,EID2B,GPX4,OXLD1,LMAN2L,MRPL52,GNB2,TCF25,UNC45A,RING1,CUEDC2,ILVBL,MAPK3,SH3GLB2,ARL3,C1orf56,GMPR2,HTRA2,ALDOA,E4F1,THAP4,DYNLRB1,DGCR14,NICN1,URM1,UBXN6,ZER1,FAM73B,C9orf114,THAP7,GPANK1,C2orf81,ASB6,NSMCE1,C7orf50,MZT2B,STOML2,BEND5,ATRAID,MPLKIP,TATDN2,ALKBH4,GFER,CEP89,PRR7,TIMM17B,DNAJC4,ZCWPW1,FBXW9,TUSC2,SRP14,VPS33B,MRPL24,WDR31,SDR39U1,C14orf79,SMYD5,HINT2,TMEM134,VAMP2,NOL3,BANF1,HSD17B8,TRMO,SMU1,MYL5,HDDC3,BAP1,TIMM22,CCDC94,PRR14,NUDT7,APTX,MANBAL,COX8A,VEGFB,NTMT1,NDUFB11,MARCH9,TBKBP1,RBM42,CIRBP,PPCDC,NT5M,TMEM129,SURF1,NME4,C2orf68,FIS1,EAPP,MOAP1,NT5C,ELAC1,FAM98C,NEDD8,FAM234A,C14orf142,MACROD1,C19orf25,FBXL8,HIST3H2A,ECI1,MAGEF1,C9orf3,BRF1,ZNF48,ABHD14B,FUZ,SPATA2,CDK20,CDIPT,ZDHHC4,SPIN2B,HCFC1R1,SGTA,PHF19,PIGV,RNPS1,C19orf54,POMT1,BCL7B,SGF29,ARIH2OS,TOM1L2,FZR1,ZMYND19,NDUFA8,TRADD,TYSND1,UFSP1,C16orf91,RABEPK,MRFAP1L1,C9orf16 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | FNDC3B,LYSMD3,ARFGEF1,LARP4,SEC24D | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268996 | ENST00000596585 | exon_skip_287763 | chr17:28884224-28884315 | -16.98 | -0.2830 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000268996 | ENST00000596585 | exon_skip_501752 | chr9:136992924-136992974 | -15.47 | -0.4834 | PAXX | ENST00000371620 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268996.3 | ENST00000596585.3 | 138 | 414 | 1 |
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