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lncRNA: ENSG00000268713

Summary for CTC-444N24.8

Gene summary

Gene information	Ensembl ID	ENSG00000268713
	Gene symbol	CTC-444N24.8
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for CTC-444N24.8

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000268713	2.342570e+02	1.163743e+00	9.213172e-02	1.263129e+01	1.420000e-36	1.980000e-35	UP	KIRC
ENSG00000268713	2.071923e+02	1.475546e+00	1.809782e-01	8.153165e+00	3.550000e-16	4.010000e-15	UP	KICH
ENSG00000268713	2.200075e+02	1.214071e+00	1.479477e-01	8.206080e+00	2.290000e-16	3.710000e-15	UP	KIRP

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000268713	5.674336e-01	4.808724e-05	CHOL	1.805418e-04
ENSG00000268713	3.908722e-01	1.523650e-04	KICH	2.470950e-04
ENSG00000268713	4.104129e-01	4.185996e-26	KIRC	9.188771e-25

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lncRNA-Protein interaction for CTC-444N24.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000070495	JMJD6	4.98	90.909	Q6NYC1	RBP,Epi	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000277258	PCGF2	5.36	90.6394	P35227	TF,Epi	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000136450	SRSF1	1.04	90.0784	Q07955	RBP,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000130254	SAFB2	87.88	91.9283	Q14151	TF,RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000196867	ZFP28	79.59	91.4149	Q8NHY6	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000105127	AKAP8	78.73	93.3039	O43823	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000196670	ZFP62	53.35	90.4896	Q8NB50	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000198040	ZNF84	46.26	92.9286	P51523	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000186272	ZNF17	29.58	90.7842	P17021	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000105708	ZNF14	22.87	90.7248	P17017	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000179886	TIGD5	14.76	91.159	Q53EQ6	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000185252	ZNF74	11.16	90.3312	Q16587	TF,RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000172273	HINFP	4.79	91.3547	Q9BQA5	TF,Epi	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000256223	ZNF10	3.72	90.8083	P21506	TF	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000278129	ZNF8	1.69	91.8578	P17098	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000111641	NOP2	93.55	92.6682	P46087	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000130254	SAFB2	87.88	93.7595	Q14151	TF,RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000004534	RBM6	86.19	93.1533	P78332	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000135870	RC3H1	54.82	94.7178	Q5TC82	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000079134	THOC1	52.18	90.2678	Q96FV9	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000129351	ILF3	39.85	94.2747	Q12906	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000184863	RBM33	22.68	90.9925	Q96EV2	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000116350	SRSF4	16.41	93.1021	Q08170	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000185252	ZNF74	11.16	90.1083	Q16587	TF,RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000164548	TRA2A	7.34	91.0284	Q13595	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000148296	SURF6	6.43	91.2456	O75683	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000070495	JMJD6	4.98	92.3789	Q6NYC1	RBP,Epi	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000111364	DDX55	4.06	94.0296	Q8NHQ9	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000134597	RBMX2	3.86	90.395	Q9Y388	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000204356	NELFE	3.22	91.4061	P18615	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000101361	NOP56	2.8	90.7385	O00567	RBP	NA
ENSG00000268713	ENST00000600047	CTC-444N24.8	ENSG00000136450	SRSF1	1.04	90.2358	Q07955	RBP,Epi	NA

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lncRNA-DNA interaction for CTC-444N24.8

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,SLIRP,ILF3,GLI4,RBM39,MYPOP,IRF3,JMJD6,CIRBP,DDX56,IMP3,TIGD5,MZF1,NRF1,AKAP8,ZNF74,DDX55,ZFP14,ZFP69,SAFB2,THOC1,LSM5,ZBED5,PA2G4,CENPT,TTC14,ZGLP1,RC3H1,SUGP1,SRSF4,DBP,LSM4,RBM4B,U2AF2,CSTF3,PUS3,CPSF1,RNPS1,NR2F6,ZBTB3,CWC15,SURF6,DHX34,RBM15,PPIE,SF3B6,NELFE,IRF7,USF1,CXXC1,ZNF71,MOV10,HSF1,ZNF22,PHF1,THYN1,ZC3H8,DEAF1,DDX49,HSF4,THOC6,RBM42,ZFP62,MEX3D,ZNF48,ATF4,SF3B4,REXO4,TIGD1,DDX51,MBD3,E2F4,PCBP4,THAP3,SRSF2,DDX31,EIF3B,PBX4,ZNF83,ZNF3,ZNF8,ZNF18,PCGF2,TGIF1,ETV2,SOX12,ZNF14,NOP2,GMEB2,THAP8,LSM2,ZFP28,ZNF17,ZNF84,PIN1,TRA2A,RRP7A,SMYD3,HINFP,THOC7,RALY,RBM33,NOL8,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ZNF48,RRP7A,MZF1,LSM2,U2AF2,ZNF14,ZNF3,SRP14,ZNF83,RBM42,RBM6,PBX4,THAP3,CIRBP,TGIF1

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Only predicted by TDF

GLMP,GTF2I,SMAD1,ADAT1,SF3A1,PATL1,ASCC1,STAU1,AKAP1

Exist in public source

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lncRNA-RNA interaction for CTC-444N24.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

EHF,PUM1,BAZ2A,HBP1,KLF13

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000268713	ENST00000600047	exon_skip_13601	chr1:164820071-164820184	-14.17	-0.2180	PBX1	ENST00000420696	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_380242	chr3:186784961-186785101	-12.74	-0.1011	EIF4A2	ENST00000323963	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_5818	chr1:45568484-45568684	-18.04	-0.1037	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_11029	chr1:154989559-154989707	-14.37	-0.1140	FLAD1	ENST00000292180	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_41813	chr10:68337857-68337996	-14.60	-0.1150	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_74009	chr11:64773429-64773505	-12.18	-0.1933	SF1	ENST00000377390	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_309204	chr19:49181348-49181461	-14.25	-0.1284	TRPM4	ENST00000252826	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_319223	chr19:43526200-43526349	-17.22	-0.1257	ETHE1	ENST00000292147	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_382458	chr3:38131595-38131638	-7.48	-0.2579	ACAA1	ENST00000333167	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_9446	chr1:147270931-147271005	-9.51	-0.2570	CHD1L	ENST00000369258	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_53559	chr10:101793912-101793998	-12.52	-0.1987	OGA	ENST00000361464	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_66482	chr11:126274926-126275021	-12.93	-0.1658	FOXRED1	ENST00000263578	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_87733	chr12:120571190-120571291	-11.09	-0.1848	RNF10	ENST00000325954	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_90780	chr12:26979783-26979936	-12.57	-0.1074	TM7SF3	ENST00000343028	In-frame
ENSG00000268713	ENST00000600047	exon_skip_92074	chr12:50142052-50142110	-8.03	-0.1709	CERS5	ENST00000317551	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_114376	chr14:74293153-74293248	-9.98	-0.1263	ABCD4	ENST00000356924	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_128982	chr15:72250844-72250954	-13.73	-0.1260	PARP6	ENST00000287196,ENST00000569795	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_290158	chr17:42953723-42953778	-6.73	-0.1869	AARSD1	ENST00000427569	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_300663	chr19:1425877-1425960	-11.92	-0.2091	DAZAP1	ENST00000233078	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_302168	chr19:10680345-10680443	-9.46	-0.1051	ILF3	ENST00000590261	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_324294	chr2:27774423-27774530	-10.68	-0.1271	MRPL33	ENST00000296102	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_353131	chr20:58669290-58669453	-17.47	-0.1444	STX16	ENST00000371141	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_374497	chr3:49999439-49999513	-8.72	-0.1896	RBM6	ENST00000266022	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_377198	chr3:123130479-123130616	-12.12	-0.1018	PDIA5	ENST00000316218	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_430434	chr4:82356536-82356683	-9.81	-0.1078	HNRNPD	ENST00000313899	In-frame
ENSG00000268713	ENST00000600047	exon_skip_462160	chr6:127316449-127316502	-7.88	-0.1642	ECHDC1	ENST00000531967	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_476549	chr7:76013741-76013887	-14.27	-0.1151	STYXL1	ENST00000248600,ENST00000359697,ENST00000431581	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_481699	chr8:19824802-19824972	-14.30	-0.1075	INTS10	ENST00000397977	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_509943	chrX:47175018-47175092	-11.70	-0.2167	RBM10	ENST00000377604	Frame-shift
ENSG00000268713	ENST00000600047	exon_skip_332658	chr2:203272669-203272748	-8.21	-0.1173	CYP20A1	ENST00000356079	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTC-444N24.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000268713	ENSG00000179886	TIGD5	ENSG00000180035	ZNF48	6	CHOL,HNSC,KICH,KIRP,LIHC,MESO
ENSG00000268713	ENSG00000105127	AKAP8	ENSG00000099326	MZF1	5	CHOL,GBM,KIRP,LGG,LIHC
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000099326	MZF1	11	ACC,CHOL,ESCA,GBM,HNSC,KIRP,LGG,LIHC,LUAD,PAAD,PCPG
ENSG00000268713	ENSG00000172273	HINFP	ENSG00000099326	MZF1	5	CHOL,KIRC,KIRP,LIHC,PAAD
ENSG00000268713	ENSG00000186272	ZNF17	ENSG00000099326	MZF1	11	ACC,CHOL,ESCA,GBM,LGG,LUAD,LUSC,OV,PAAD,SKCM,STAD
ENSG00000268713	ENSG00000198040	ZNF84	ENSG00000099326	MZF1	8	BLCA,CHOL,ESCA,HNSC,KIRP,LIHC,LUAD,SKCM
ENSG00000268713	ENSG00000278129	ZNF8	ENSG00000099326	MZF1	8	ESCA,GBM,LGG,LUAD,LUSC,MESO,PAAD,SKCM
ENSG00000268713	ENSG00000105127	AKAP8	ENSG00000063244	U2AF2	5	ACC,CHOL,GBM,LGG,LIHC
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000063244	U2AF2	6	ACC,CHOL,GBM,LGG,LIHC,PAAD
ENSG00000268713	ENSG00000186272	ZNF17	ENSG00000063244	U2AF2	5	ACC,CHOL,GBM,LGG,PAAD
ENSG00000268713	ENSG00000105127	AKAP8	ENSG00000167766	ZNF83	6	ACC,CHOL,GBM,KIRP,LGG,LIHC
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000167766	ZNF83	7	CHOL,KIRP,LGG,LIHC,PAAD,PCPG,TGCT
ENSG00000268713	ENSG00000172273	HINFP	ENSG00000167766	ZNF83	5	CHOL,KIRC,KIRP,LIHC,PAAD
ENSG00000268713	ENSG00000186272	ZNF17	ENSG00000167766	ZNF83	13	ACC,BLCA,BRCA,CHOL,COAD,ESCA,GBM,LAML,LGG,LUAD,OV,SKCM,STAD
ENSG00000268713	ENSG00000196670	ZFP62	ENSG00000167766	ZNF83	5	CHOL,COAD,LAML,READ,SKCM
ENSG00000268713	ENSG00000196867	ZFP28	ENSG00000167766	ZNF83	5	GBM,LAML,LUAD,OV,TGCT
ENSG00000268713	ENSG00000198040	ZNF84	ENSG00000167766	ZNF83	12	BLCA,CHOL,COAD,ESCA,HNSC,KIRP,LAML,LIHC,LUAD,READ,SKCM,STAD
ENSG00000268713	ENSG00000256223	ZNF10	ENSG00000167766	ZNF83	8	BLCA,ESCA,KIRP,LAML,LUAD,SKCM,TGCT,UCEC
ENSG00000268713	ENSG00000278129	ZNF8	ENSG00000167766	ZNF83	7	COAD,GBM,LAML,LGG,LUAD,PAAD,SKCM
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000126254	RBM42	7	ACC,CHOL,GBM,LGG,LIHC,PAAD,THCA
ENSG00000268713	ENSG00000179886	TIGD5	ENSG00000126254	RBM42	6	CHOL,HNSC,KICH,KIRP,LIHC,MESO
ENSG00000268713	ENSG00000105127	AKAP8	ENSG00000004534	RBM6	5	CHOL,GBM,KIRP,LGG,LIHC
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000004534	RBM6	12	CHOL,ESCA,GBM,HNSC,KIRP,LGG,LIHC,LUAD,PAAD,PCPG,READ,TGCT
ENSG00000268713	ENSG00000172273	HINFP	ENSG00000004534	RBM6	5	CHOL,KIRC,KIRP,LIHC,PAAD
ENSG00000268713	ENSG00000186272	ZNF17	ENSG00000004534	RBM6	9	CHOL,COAD,ESCA,GBM,LAML,LUAD,PAAD,SKCM,STAD
ENSG00000268713	ENSG00000198040	ZNF84	ENSG00000004534	RBM6	12	BLCA,CHOL,COAD,ESCA,HNSC,KIRP,LAML,LIHC,LUAD,READ,SKCM,STAD
ENSG00000268713	ENSG00000256223	ZNF10	ENSG00000004534	RBM6	8	BLCA,ESCA,KIRP,LAML,LUAD,SKCM,TGCT,UCEC
ENSG00000268713	ENSG00000278129	ZNF8	ENSG00000004534	RBM6	8	COAD,ESCA,GBM,LGG,LUAD,LUSC,PAAD,SKCM
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000105717	PBX4	5	CHOL,KIRP,LUAD,TGCT,THYM
ENSG00000268713	ENSG00000172273	HINFP	ENSG00000041988	THAP3	5	CHOL,KIRC,KIRP,LIHC,PAAD
ENSG00000268713	ENSG00000179886	TIGD5	ENSG00000041988	THAP3	5	CHOL,HNSC,KIRP,LIHC,MESO
ENSG00000268713	ENSG00000105127	AKAP8	ENSG00000099622	CIRBP	5	ACC,CHOL,GBM,KIRP,LIHC
ENSG00000268713	ENSG00000130254	SAFB2	ENSG00000099622	CIRBP	7	ACC,CHOL,GBM,HNSC,KIRP,LIHC,THCA

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000268713	ENSG00000004534	RBM6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,SKCM,READ,PCPG,PAAD,TGCT
ENSG00000268713	ENSG00000079134	THOC1	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,SKCM,READ,THYM,PCPG,PAAD,TGCT,THCA
ENSG00000268713	ENSG00000164548	TRA2A	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,READ,THYM,PCPG,PAAD,TGCT,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000268713.1	ENST00000600047.1	61	560	745

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential