 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | JUN,FOXN3,ZHX3,KLF9,JDP2,CPEB2,ZBTB4,HIC1,SMAD9,TEAD3,JAZF1,KLF10,GATA6,CSDE1,FOXF2,RBPMS,RBMS3,AHDC1,ZEB2,NACC2,FOXP1,MEIS1,NR4A3,NFIA,MEIS2,RARA,HAND2,MEF2C,RBM43,MEF2D,FLI1,KLF11,NFIC,QKI,ERG,ZNF25 | | Exist in public source | | FOXF1 |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ILF2,RNPS1,TFAP4,SRSF1,NOP2,PA2G4,LSM4,DDX41,PREB,PTBP1,SNRPA | | Exist in public source | | DKC1,EIF3B,DDX56,CPSF3 |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000268388 | ENST00000593604 | exon_skip_7558 | chr1:81952986-81953025 | -8.37 | -0.2790 | ADGRL2 | ENST00000370717,ENST00000370728 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_42594 | chr10:74111908-74112112 | -25.86 | -0.2330 | VCL | ENST00000211998 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_97739 | chr12:121244572-121244615 | -8.64 | -0.3757 | CAMKK2 | ENST00000324774,ENST00000402834,ENST00000404169 | Frame-shift | | ENSG00000268388 | ENST00000593604 | exon_skip_287874 | chr17:29085603-29085648 | -9.05 | -0.3771 | MYO18A | ENST00000527372 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_335378 | chr2:237751199-237751271 | -9.71 | -0.2624 | LRRFIP1 | ENST00000392000 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_436488 | chr5:96726793-96726859 | -8.21 | -0.2219 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_21628 | chr1:9756480-9756510 | -6.79 | -0.3086 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_33516 | chr1:156938417-156938513 | -16.38 | -0.1998 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_43507 | chr10:84499874-84499959 | -23.77 | -0.3212 | CCSER2 | ENST00000224756 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268388 | ENST00000593604 | exon_skip_149413 | chr17:17175292-17175412 | -21.70 | -0.2411 | MPRIP | ENST00000341712 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_48713 | chr10:34336198-34336243 | -8.12 | -0.2388 | PARD3 | ENST00000374789 | In-frame | | ENSG00000268388 | ENST00000593604 | exon_skip_456460 | chr6:17771113-17771218 | -18.49 | -0.2341 | KIF13A | ENST00000259711 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268388.4 | ENST00000595886.1 | 79 | 134 | 373 | | ENSG00000268388.4 | ENST00000600553.4 | 97 | 501 | 208 | | ENSG00000268388.4 | ENST00000598996.2 | 66 | 261 | 61 | | ENSG00000268388.4 | ENST00000599749.4 | 147 | 2829 | 2386 | | ENSG00000268388.4 | ENST00000597578.1 | 156 | 636 | 166 | | ENSG00000268388.4 | ENST00000594398.1 | 90 | 31 | 303 | | ENSG00000268388.4 | ENST00000593604.1 | 66 | 331 | 131 |
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