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lncRNA: ENSG00000268362

Summary for CTD-2017D11.1

Gene summary

Gene information	Ensembl ID	ENSG00000268362
	Gene symbol	CTD-2017D11.1
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2017D11.1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000268362	7.718983e+01	1.004208e+00	1.828795e-01	5.491093e+00	3.990000e-08	2.020000e-07	UP	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000268362	3.450488e-01	2.026961e-02	CHOL	2.199580e-02

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lncRNA-Protein interaction for CTD-2017D11.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000118058	KMT2A	140.93	96.1518	Q03164	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000116731	PRDM2	107.76	92.4341	Q13029	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000171634	BPTF	89.54	94.2732	Q12830	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000118058	KMT2A	47.22	93.8212	Q03164	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000123636	BAZ2B	166.56	95.1464	Q9UIF8	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000168769	TET2	100.64	90.0747	Q6N021	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000123636	BAZ2B	55.59	94.3238	Q9UIF8	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000084093	REST	29.71	92.061	Q13127	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000102189	EEA1	172.12	93.8703	Q15075	TF	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000123636	BAZ2B	166.56	95.2758	Q9UIF8	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000118058	KMT2A	140.93	96.0874	Q03164	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000116731	PRDM2	107.76	92.3313	Q13029	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000168769	TET2	100.64	90.597	Q6N021	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000171634	BPTF	89.54	94.3238	Q12830	TF,Epi	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000167232	ZNF91	83.57	91.6312	Q05481	TF	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000140836	ZFHX3	72.7	94.391	Q15911	TF	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000196670	ZFP62	70.34	90.3207	Q8NB50	TF	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000256223	ZNF10	13.92	90.0661	P21506	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000102189	EEA1	57.43	91.2604	Q15075	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000123636	BAZ2B	55.59	94.311	Q9UIF8	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000118058	KMT2A	47.22	93.8949	Q03164	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000084093	REST	29.71	92.3549	Q13127	TF,Epi	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000167232	ZNF91	28.43	92.722	Q05481	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000117000	RLF	27.71	91.9976	Q13129	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000198521	ZNF43	27.53	91.4644	P17038	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000140836	ZFHX3	26.63	93.0025	Q15911	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000198538	ZNF28	21.21	90.308	P17035	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000166432	ZMAT1	15.35	90.0026	Q5H9K5	TF	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000197857	ZNF44	14.92	91.1656	P15621	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000004534	RBM6	39.99	90.7625	P78332	RBP	NA
ENSG00000268362	ENST00000597683	CTD-2017D11.1	ENSG00000106344	RBM28	36.04	94.0679	Q9NW13	RBP	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000004534	RBM6	117.45	93.3801	P78332	RBP	NA
ENSG00000268362	ENST00000594934	CTD-2017D11.1	ENSG00000162775	RBM15	98.96	90.3184	Q96T37	RBP	ENCODE

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lncRNA-DNA interaction for CTD-2017D11.1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

XRN1,RBM39,KLF12,MYSM1,KAT7,ARID2,ZXDC,SUGP2,DMTF1,ZNF70,ZNF24,RORA,RBM28,IKZF5,TET3,ZFP14,RNPC3,TRNT1,CNOT4,SON,ZZZ3,TTC14,RBM4,CREB1,RC3H1,ZNF44,EEA1,ZNF91,AGO2,RBM26,PURB,ADNP,NCBP1,PUS7L,ASH1L,CLOCK,FUBP1,RBM15,ZFP30,SP4,CPSF7,UBR5,THAP9,THOC2,THAP6,DDX17,RFX7,LCOR,MECP2,FOXJ3,PURA,ZNF41,ZC3H8,RBM41,NOL9,DZIP3,SRBD1,ZFP62,ZNF93,ZNF28,CELF1,ELK4,NFXL1,BACH1,PRDM2,FOXP1,ZMAT1,NSUN6,RFX3,ZFX,ZNF8,NR2C2,SYNJ1,RBM6,ZNF14,ZFHX3,PUM2,XPO1,RBM5,ELF2,SMAD4,IKZF2,ZNF43,ZFP28,SP3,ZNF17,ZNF84,BAZ2B,KMT2A,ZNF69,ZFP3,ZBED6,SFPQ,TET2,RBM33,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2017D11.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-2017D11.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_351328	ENSG00000268362.4	chr19	24054941	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351330	ENSG00000268362.4	chr19	24054949	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351340	ENSG00000268362.4	chr19	24054999	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351348	ENSG00000268362.4	chr19	24055011	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351352	ENSG00000268362.4	chr19	24055015	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351354	ENSG00000268362.4	chr19	24055036	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351356	ENSG00000268362.4	chr19	24055039	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351358	ENSG00000268362.4	chr19	24055040	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351362	ENSG00000268362.4	chr19	24055043	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351364	ENSG00000268362.4	chr19	24055044	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351366	ENSG00000268362.4	chr19	24055046	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351376	ENSG00000268362.4	chr19	24055056	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351392	ENSG00000268362.4	chr19	24055109	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351394	ENSG00000268362.4	chr19	24055112	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351398	ENSG00000268362.4	chr19	24055115	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351420	ENSG00000268362.4	chr19	24055349	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351426	ENSG00000268362.4	chr19	24055418	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351436	ENSG00000268362.4	chr19	24055459	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351438	ENSG00000268362.4	chr19	24055462	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351442	ENSG00000268362.4	chr19	24055465	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351446	ENSG00000268362.4	chr19	24055468	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351452	ENSG00000268362.4	chr19	24055499	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351454	ENSG00000268362.4	chr19	24055529	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351460	ENSG00000268362.4	chr19	24055539	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351520	ENSG00000268362.4	chr19	24061882	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351522	ENSG00000268362.4	chr19	24061883	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351560	ENSG00000268362.4	chr19	24061938	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351654	ENSG00000268362.4	chr19	24064590	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351660	ENSG00000268362.4	chr19	24064604	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351664	ENSG00000268362.4	chr19	24064620	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351666	ENSG00000268362.4	chr19	24064626	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351668	ENSG00000268362.4	chr19	24064627	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351670	ENSG00000268362.4	chr19	24064630	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351680	ENSG00000268362.4	chr19	24064666	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351690	ENSG00000268362.4	chr19	24064710	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351716	ENSG00000268362.4	chr19	24066592	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351724	ENSG00000268362.4	chr19	24066614	+	lincRNA	CTD-2017D11.1	ENST00000597683.1	lincRNA	CTD-2017D11.1-002
LncEditing_351766	ENSG00000268362.4	chr19	24066789	+	lincRNA	CTD-2017D11.1	ENST00000594934.4	lincRNA	CTD-2017D11.1-001
LncEditing_351771	ENSG00000268362.4	chr19	24066819	+	lincRNA	CTD-2017D11.1	ENST00000594934.4	lincRNA	CTD-2017D11.1-001
LncEditing_351772	ENSG00000268362.4	chr19	24066820	+	lincRNA	CTD-2017D11.1	ENST00000594934.4	lincRNA	CTD-2017D11.1-001
LncEditing_351773	ENSG00000268362.4	chr19	24066825	+	lincRNA	CTD-2017D11.1	ENST00000594934.4	lincRNA	CTD-2017D11.1-001
LncEditing_351774	ENSG00000268362.4	chr19	24066841	+	lincRNA	CTD-2017D11.1	ENST00000594934.4	lincRNA	CTD-2017D11.1-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000268362	LncEditing_351328	LAML	chr19_24054941_+	1.807210e+01	1.302816e+01	2.118055e+00	4.223913e+00	2.400966e-05	4.217914e-05	UP
ENSG00000268362	LncEditing_351330	LAML	chr19_24054949_+	1.893919e+01	1.241085e+01	1.639956e+00	5.447063e+00	5.120824e-08	1.553862e-07	UP
ENSG00000268362	LncEditing_351340	LAML	chr19_24054999_+	1.764461e+01	1.292560e+01	2.227186e+00	4.216843e+00	2.477462e-05	4.327674e-05	UP
ENSG00000268362	LncEditing_351348	LAML	chr19_24055011_+	1.832868e+01	1.400076e+01	2.573356e+00	2.924022e+00	3.455409e-03	4.099356e-03	UP
ENSG00000268362	LncEditing_351352	LAML	chr19_24055015_+	1.757078e+01	1.403605e+01	3.086027e+00	2.641746e+00	8.247978e-03	9.185079e-03	UP
ENSG00000268362	LncEditing_351354	LAML	chr19_24055036_+	1.801538e+01	1.320841e+01	2.233275e+00	3.419035e+00	6.284370e-04	8.519425e-04	UP
ENSG00000268362	LncEditing_351356	LAML	chr19_24055039_+	1.791444e+01	1.311593e+01	2.223198e+00	3.618279e+00	2.965691e-04	4.244066e-04	UP
ENSG00000268362	LncEditing_351362	LAML	chr19_24055043_+	1.801220e+01	1.420095e+01	2.915562e+00	2.187736e+00	2.868881e-02	2.972373e-02	UP
ENSG00000268362	LncEditing_351364	LAML	chr19_24055044_+	1.917776e+01	1.337053e+01	1.921684e+00	4.163485e+00	3.134262e-05	5.406164e-05	UP
ENSG00000268362	LncEditing_351392	LAML	chr19_24055109_+	1.605746e+01	1.105608e+01	1.857344e+00	3.941249e+00	8.105829e-05	1.300091e-04	UP
ENSG00000268362	LncEditing_351398	LAML	chr19_24055115_+	1.749478e+01	1.393649e+01	3.048250e+00	2.744213e+00	6.065621e-03	6.891483e-03	UP
ENSG00000268362	LncEditing_351420	LAML	chr19_24055349_+	1.760622e+01	1.249751e+01	2.022470e+00	4.299448e+00	1.712242e-05	3.091548e-05	UP
ENSG00000268362	LncEditing_351436	LAML	chr19_24055459_+	1.947603e+01	1.399747e+01	2.098488e+00	3.096714e+00	1.956785e-03	2.416630e-03	UP
ENSG00000268362	LncEditing_351438	LAML	chr19_24055462_+	1.759080e+01	1.224996e+01	1.915547e+00	4.565103e+00	4.992495e-06	1.017447e-05	UP
ENSG00000268362	LncEditing_351442	LAML	chr19_24055465_+	1.800068e+01	1.268426e+01	1.980151e+00	4.410241e+00	1.032554e-05	1.964875e-05	UP
ENSG00000268362	LncEditing_351446	LAML	chr19_24055468_+	1.750922e+01	1.422249e+01	3.333993e+00	2.781720e+00	5.407169e-03	6.188929e-03	UP
ENSG00000268362	LncEditing_351454	LAML	chr19_24055529_+	1.869789e+01	1.303035e+01	1.919386e+00	4.179856e+00	2.916942e-05	5.073836e-05	UP
ENSG00000268362	LncEditing_351460	LAML	chr19_24055539_+	2.003129e+01	1.326319e+01	1.681158e+00	5.137262e+00	2.787698e-07	7.142753e-07	UP
ENSG00000268362	LncEditing_351560	LAML	chr19_24061938_+	1.870453e+01	1.434066e+01	2.609084e+00	2.543172e+00	1.098512e-02	1.204851e-02	UP
ENSG00000268362	LncEditing_351654	LAML	chr19_24064590_+	1.649808e+01	1.216040e+01	2.272175e+00	3.994053e+00	6.495325e-05	1.055490e-04	UP
ENSG00000268362	LncEditing_351660	LAML	chr19_24064604_+	1.765241e+01	1.401233e+01	3.001485e+00	3.318889e+00	9.037638e-04	1.186130e-03	UP
ENSG00000268362	LncEditing_351664	LAML	chr19_24064620_+	1.735012e+01	1.343009e+01	2.706533e+00	3.008762e+00	2.623148e-03	3.172956e-03	UP
ENSG00000268362	LncEditing_351666	LAML	chr19_24064626_+	1.782682e+01	1.396165e+01	2.836238e+00	3.073870e+00	2.113013e-03	2.599175e-03	UP
ENSG00000268362	LncEditing_351668	LAML	chr19_24064627_+	1.740141e+01	1.215833e+01	1.933266e+00	4.507666e+00	6.554458e-06	1.307715e-05	UP
ENSG00000268362	LncEditing_351670	LAML	chr19_24064630_+	1.715613e+01	1.253836e+01	2.210553e+00	4.064003e+00	4.823817e-05	8.061453e-05	UP
ENSG00000268362	LncEditing_351680	LAML	chr19_24064666_+	1.624316e+01	1.425164e+01	5.299293e+00	2.174428e+00	2.967297e-02	3.066621e-02	UP
ENSG00000268362	LncEditing_351690	LAML	chr19_24064710_+	1.823468e+01	1.384313e+01	2.515628e+00	3.145148e+00	1.660026e-03	2.077135e-03	UP
ENSG00000268362	LncEditing_351771	LAML	chr19_24066819_+	2.002486e+01	1.332290e+01	1.701018e+00	5.074113e+00	3.893070e-07	9.732674e-07	UP
ENSG00000268362	LncEditing_351771	THCA	chr19_24066819_+	2.402918e+00	1.209850e+00	1.010143e+00	7.470499e+00	7.989111e-14	1.842018e-13	UP
ENSG00000268362	LncEditing_351328	OV	chr19_24054941_+	3.147682e+00	1.796133e+00	1.235490e+00	5.127946e+00	2.929204e-07	3.969644e-07	UP
ENSG00000268362	LncEditing_351330	OV	chr19_24054949_+	3.341545e+00	1.652241e+00	9.841632e-01	7.148825e+00	8.752359e-13	1.960486e-12	UP
ENSG00000268362	LncEditing_351340	OV	chr19_24054999_+	3.276910e+00	1.734646e+00	1.089687e+00	5.882868e+00	4.032186e-09	6.284059e-09	UP
ENSG00000268362	LncEditing_351348	OV	chr19_24055011_+	3.361728e+00	1.760590e+00	1.071646e+00	5.509961e+00	3.589132e-08	5.201272e-08	UP
ENSG00000268362	LncEditing_351354	OV	chr19_24055036_+	3.398851e+00	1.605972e+00	9.245556e-01	7.823800e+00	5.125238e-15	1.425917e-14	UP
ENSG00000268362	LncEditing_351356	OV	chr19_24055039_+	3.245785e+00	1.614808e+00	9.928470e-01	7.331359e+00	2.278296e-13	5.378417e-13	UP
ENSG00000268362	LncEditing_351364	OV	chr19_24055044_+	3.252598e+00	1.719687e+00	1.087610e+00	6.089703e+00	1.131206e-09	1.859059e-09	UP
ENSG00000268362	LncEditing_351392	OV	chr19_24055109_+	2.707869e+00	1.477134e+00	1.143698e+00	7.320265e+00	2.474817e-13	5.819935e-13	UP
ENSG00000268362	LncEditing_351398	OV	chr19_24055115_+	2.642899e+00	1.823506e+00	1.867739e+00	4.980299e+00	6.348596e-07	8.417497e-07	UP
ENSG00000268362	LncEditing_351420	OV	chr19_24055349_+	2.913621e+00	1.766755e+00	1.385596e+00	4.396389e+00	1.100664e-05	1.343147e-05	UP
ENSG00000268362	LncEditing_351426	OV	chr19_24055418_+	3.849162e+00	1.717116e+00	8.586959e-01	5.285730e+00	1.252042e-07	1.739052e-07	UP
ENSG00000268362	LncEditing_351438	OV	chr19_24055462_+	3.685516e+00	1.645970e+00	8.598982e-01	7.076284e+00	1.480713e-12	3.245568e-12	UP
ENSG00000268362	LncEditing_351442	OV	chr19_24055465_+	3.662935e+00	1.618162e+00	8.484328e-01	7.525639e+00	5.246308e-14	1.321638e-13	UP
ENSG00000268362	LncEditing_351446	OV	chr19_24055468_+	3.772428e+00	1.624521e+00	8.227210e-01	7.429843e+00	1.087268e-13	2.662432e-13	UP
ENSG00000268362	LncEditing_351454	OV	chr19_24055529_+	3.040360e+00	1.619455e+00	1.100433e+00	7.354814e+00	1.911938e-13	4.584165e-13	UP
ENSG00000268362	LncEditing_351460	OV	chr19_24055539_+	2.988508e+00	1.772187e+00	1.326446e+00	5.469922e+00	4.502340e-08	6.473654e-08	UP
ENSG00000268362	LncEditing_351520	OV	chr19_24061882_+	2.796392e+00	1.627245e+00	1.280189e+00	6.778805e+00	1.211737e-11	2.396113e-11	UP
ENSG00000268362	LncEditing_351522	OV	chr19_24061883_+	2.782644e+00	1.717249e+00	1.436045e+00	5.633121e+00	1.769771e-08	2.624684e-08	UP
ENSG00000268362	LncEditing_351560	OV	chr19_24061938_+	3.024827e+00	1.726310e+00	1.235848e+00	6.197510e+00	5.736322e-10	9.731639e-10	UP
ENSG00000268362	LncEditing_351670	OV	chr19_24064630_+	3.812646e+00	1.631077e+00	8.163478e-01	9.473221e+00	2.713457e-21	1.374668e-20	UP
ENSG00000268362	LncEditing_351716	OV	chr19_24066592_+	2.798834e+00	1.844240e+00	1.661682e+00	4.832160e+00	1.350596e-06	1.747886e-06	UP
ENSG00000268362	LncEditing_351724	OV	chr19_24066614_+	2.513119e+00	1.880840e+00	2.391761e+00	2.982139e+00	2.862416e-03	3.041007e-03	UP
ENSG00000268362	LncEditing_351766	OV	chr19_24066789_+	3.270603e+00	1.798649e+00	1.159229e+00	4.827660e+00	1.381467e-06	1.786580e-06	UP
ENSG00000268362	LncEditing_351771	OV	chr19_24066819_+	3.048800e+00	1.306739e+00	8.181496e-01	1.152762e+01	9.575410e-31	1.334029e-29	UP
ENSG00000268362	LncEditing_351772	OV	chr19_24066820_+	3.150184e+00	1.737126e+00	1.164505e+00	7.622308e+00	2.491797e-14	6.546308e-14	UP
ENSG00000268362	LncEditing_351773	OV	chr19_24066825_+	3.247998e+00	1.775188e+00	1.147343e+00	6.229006e+00	4.694036e-10	8.081935e-10	UP
ENSG00000268362	LncEditing_351774	OV	chr19_24066841_+	3.156298e+00	1.350279e+00	8.163422e-01	1.095681e+01	6.163593e-28	5.934475e-27	UP
ENSG00000268362	LncEditing_351354	STAD	chr19_24055036_+	2.616475e+00	1.110539e+00	8.088230e-01	9.913973e+00	3.619583e-23	2.516137e-22	UP
ENSG00000268362	LncEditing_351358	STAD	chr19_24055040_+	2.999807e+00	1.372408e+00	8.863990e-01	6.146701e+00	7.911101e-10	1.230043e-09	UP
ENSG00000268362	LncEditing_351362	STAD	chr19_24055043_+	2.545578e+00	1.406233e+00	1.168009e+00	6.322204e+00	2.578591e-10	4.172364e-10	UP
ENSG00000268362	LncEditing_351364	STAD	chr19_24055044_+	2.493323e+00	1.260867e+00	1.016618e+00	7.732813e+00	1.051954e-14	2.473559e-14	UP
ENSG00000268362	LncEditing_351376	STAD	chr19_24055056_+	2.895735e+00	1.391906e+00	9.461917e-01	6.619027e+00	3.615707e-11	6.253251e-11	UP
ENSG00000268362	LncEditing_351392	STAD	chr19_24055109_+	2.220934e+00	9.352452e-01	8.014426e-01	9.773715e+00	1.459983e-22	9.280445e-22	UP
ENSG00000268362	LncEditing_351394	STAD	chr19_24055112_+	2.135823e+00	1.412399e+00	1.676042e+00	5.878177e+00	4.148099e-09	6.067495e-09	UP
ENSG00000268362	LncEditing_351398	STAD	chr19_24055115_+	2.209538e+00	1.376429e+00	1.464527e+00	5.625252e+00	1.852373e-08	2.590428e-08	UP
ENSG00000268362	LncEditing_351420	STAD	chr19_24055349_+	2.340736e+00	1.250868e+00	1.106154e+00	7.489289e+00	6.924750e-14	1.518567e-13	UP
ENSG00000268362	LncEditing_351426	STAD	chr19_24055418_+	2.809957e+00	1.322519e+00	9.197439e-01	6.999944e+00	2.560652e-12	4.869660e-12	UP
ENSG00000268362	LncEditing_351436	STAD	chr19_24055459_+	2.949101e+00	1.365187e+00	8.999467e-01	6.164871e+00	7.054071e-10	1.103981e-09	UP
ENSG00000268362	LncEditing_351438	STAD	chr19_24055462_+	2.564687e+00	1.111287e+00	8.288087e-01	1.044340e+01	1.570872e-25	1.540746e-24	UP
ENSG00000268362	LncEditing_351442	STAD	chr19_24055465_+	2.482060e+00	1.160535e+00	9.117868e-01	9.773392e+00	1.464651e-22	9.280445e-22	UP
ENSG00000268362	LncEditing_351446	STAD	chr19_24055468_+	2.589656e+00	1.161159e+00	8.641585e-01	9.642850e+00	5.270414e-22	3.055560e-21	UP
ENSG00000268362	LncEditing_351452	STAD	chr19_24055499_+	2.610764e+00	1.291391e+00	9.846915e-01	8.681282e+00	3.913315e-18	1.376871e-17	UP
ENSG00000268362	LncEditing_351460	STAD	chr19_24055539_+	2.719672e+00	1.188471e+00	8.372926e-01	9.131995e+00	6.724818e-20	2.944936e-19	UP
ENSG00000268362	LncEditing_351520	STAD	chr19_24061882_+	2.861442e+00	1.364858e+00	9.363373e-01	6.116877e+00	9.542713e-10	1.470954e-09	UP
ENSG00000268362	LncEditing_351522	STAD	chr19_24061883_+	3.210199e+00	1.375816e+00	8.180795e-01	5.211888e+00	1.869286e-07	2.429054e-07	UP
ENSG00000268362	LncEditing_351724	PRAD	chr19_24066614_+	2.836743e+00	1.837427e+00	1.596045e+00	4.723764e+00	2.315186e-06	3.182034e-06	UP
ENSG00000268362	LncEditing_351362	ESCA	chr19_24055043_+	2.716300e+00	1.372930e+00	1.015863e+00	4.849031e+00	1.240659e-06	1.970016e-06	UP
ENSG00000268362	LncEditing_351364	ESCA	chr19_24055044_+	2.554833e+00	1.265098e+00	9.862127e-01	6.018814e+00	1.757000e-09	4.420975e-09	UP
ENSG00000268362	LncEditing_351366	ESCA	chr19_24055046_+	2.932630e+00	1.533627e+00	1.069235e+00	3.562260e+00	3.676761e-04	4.363811e-04	UP
ENSG00000268362	LncEditing_351376	ESCA	chr19_24055056_+	3.175677e+00	1.497409e+00	9.220027e-01	3.946533e+00	7.929103e-05	1.004801e-04	UP
ENSG00000268362	LncEditing_351394	ESCA	chr19_24055112_+	2.259493e+00	1.498822e+00	1.688703e+00	3.794983e+00	1.476539e-04	1.815147e-04	UP
ENSG00000268362	LncEditing_351398	ESCA	chr19_24055115_+	2.203625e+00	1.485964e+00	1.759078e+00	3.383024e+00	7.169240e-04	8.292895e-04	UP
ENSG00000268362	LncEditing_351426	ESCA	chr19_24055418_+	3.075493e+00	1.301871e+00	8.063008e-01	5.088022e+00	3.618177e-07	6.211055e-07	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000268362	LncEditing_351348	-3.462715e-01	2.292861e-02	2.469235e-02
ENSG00000268362	LncEditing_351426	-3.796878e-01	1.567166e-02	1.757493e-02
ENSG00000268362	LncEditing_351660	-3.050261e-01	2.226027e-02	2.404224e-02
ENSG00000268362	LncEditing_351680	-3.927407e-01	1.472625e-02	1.664148e-02
ENSG00000268362	LncEditing_351724	-5.838124e-01	1.487639e-04	5.561709e-04
ENSG00000268362	LncEditing_351766	-6.369023e-01	2.252753e-05	1.629491e-04
ENSG00000268362	LncEditing_351772	-3.291048e-01	1.415069e-02	1.615419e-02
ENSG00000268362	LncEditing_351773	-4.194809e-01	5.108615e-03	7.173567e-03
ENSG00000268362	LncEditing_351354	3.344953e-01	2.426379e-04	7.579750e-04
ENSG00000268362	LncEditing_351398	-3.358366e-01	1.212085e-03	2.375043e-03
ENSG00000268362	LncEditing_351436	-3.230635e-01	2.211616e-02	2.394787e-02
ENSG00000268362	LncEditing_351460	-3.414823e-01	7.073789e-04	1.579746e-03
ENSG00000268362	LncEditing_351660	-5.367297e-01	9.834228e-06	9.918521e-05
ENSG00000268362	LncEditing_351664	-3.679928e-01	2.366491e-03	3.921931e-03
ENSG00000268362	LncEditing_351670	-5.308979e-01	1.607219e-06	2.973385e-05
ENSG00000268362	LncEditing_351774	-4.271354e-01	7.410704e-04	1.624831e-03
ENSG00000268362	LncEditing_351362	-4.179267e-01	1.248207e-02	2.258010e-02
ENSG00000268362	LncEditing_351376	-5.615648e-01	2.359732e-02	3.260599e-02
ENSG00000268362	LncEditing_351394	-4.179376e-01	1.247953e-02	2.258010e-02
ENSG00000268362	LncEditing_351398	-4.395776e-01	4.539234e-03	1.272560e-02
ENSG00000268362	LncEditing_351420	-5.055756e-01	4.419210e-05	2.780145e-03
ENSG00000268362	LncEditing_351426	-4.408723e-01	1.022797e-02	2.009555e-02
ENSG00000268362	LncEditing_351452	-4.872664e-01	1.065150e-03	6.374493e-03
ENSG00000268362	LncEditing_351460	-5.368553e-01	2.469738e-04	3.523009e-03
ENSG00000268362	LncEditing_351670	-4.027213e-01	3.360710e-02	3.937064e-02
ENSG00000268362	LncEditing_351680	-5.218603e-01	1.064600e-02	2.040834e-02
ENSG00000268362	LncEditing_351774	-4.227643e-01	1.993774e-02	2.927675e-02
ENSG00000268362	LncEditing_351352	-4.570568e-01	6.578203e-03	1.602777e-02
ENSG00000268362	LncEditing_351454	-4.062728e-01	4.166676e-03	1.271933e-02
ENSG00000268362	LncEditing_351660	-3.800403e-01	2.662051e-02	3.446405e-02
ENSG00000268362	LncEditing_351664	-3.407174e-01	1.169889e-02	2.188825e-02
ENSG00000268362	LncEditing_351668	-3.319809e-01	3.181707e-03	1.088378e-02
ENSG00000268362	LncEditing_351670	-3.027026e-01	8.298196e-03	1.756552e-02
ENSG00000268362	LncEditing_351680	-5.394632e-01	1.576137e-04	2.176570e-03
ENSG00000268362	LncEditing_351690	-5.834071e-01	2.929489e-04	3.267507e-03

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000268362.4	ENST00000594934.4	75	948	1175
ENSG00000268362.4	ENST00000597683.1	81	1856	1611

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential