 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLFN5,CCDC69,FILIP1L,MBD4,MS4A7,PFN1,CWF19L1,CD3G,FAM118B,SUN2,CCDC88C,CD300C,DTX3L,THYN1,PARP9,NSMCE4A,TRIM14,IFIH1,SLFN12,PSMB10,CLK1,RPS6KA3,ACP5,NLRC3,MMRN2,ERAP1,BLNK,LPAR5,SP140,PRDM2,IGFBP7,HCST,SERPINB9,FSTL1,ARHGDIB,UBLCP1,GCH1,LHFPL6,TFEB,DDX60,SELL,HELQ,GCA,RSAD2,TINF2,CETP,RBM48,EMCN,SELP,LEF1,TBC1D9,BMF,UTP6,UBE2L6,HLA-DOA,ZNFX1,CMPK2,CRLF3,SMCHD1,ARAP1,RASGRP1,HYAL2,GBP4,VCPKMT,RASSF5,NSMAF,SAMD9L,SNAI3,CXorf38,ITGB7,MBD2,CHFR,ZBTB2,PSMB9,PRF1,FBXO6,HLA-DRB5,OLFML1,PARP8,NFKBID,ACKR1,PPP4R3A,GEMIN2,SPIB,HLA-B,CASP4,PSAP,LIMS1,GABPB1,CD8B,BATF2,EOGT,RBM5,AIM2,SDHD,PLPP3,DBF4,ITGA1,TAP2,PLCG2,SP110,SESN1,GFI1,ASTE1,CCL5,PHTF2,CAPZB,SRSF7,TBP,TTC14,SNX20,INTS9,ZBED5,KLF2,MLKL,APOC1,NKAPD1,APOBR,TAP1,SRSF2,ABI3,NRF1,ZNF14,CAPG,ATP2A3,PSMB8,UIMC1,CLDND1,GM2A,ABRAXAS1,GRK3,PRKACB,STAC3,CD34,VAMP5,TLR1,TMEM138,DERL3,METTL4,IL10RB,RBM26,IL17RA,AP1B1,MX2,ZNF44,SLFN11,TXNIP,DDX5,SERPINB8,ITSN2,ETV7,SZRD1,FCER2,NXF1,FNBP1,ARHGEF6,CARD11,FLT4,GBP2,GNGT2,IKBIP,ZNF17,C16orf54,MALT1,NOL8,TRPV2,LACC1,TDP1,SCIMP,TTC7A,TESK2,GGT5,CYRIA,MCTP1,ANTXR2,NFKBIA,NRIP2,HSD17B11,CYB561A3,IKZF5,UBA3,YPEL5,RBM43,PCED1B,FGFR1OP2,PDE7A,CLEC3B,TNFRSF14,TOE1,C2orf42,MZB1,RPL41,CCDC32,FBXW7,VOPP1,POC5,BCL2,ITPRIP,NAGK,NUP210,DPH3,SYTL3,ZBTB6,CENPQ,COA5,DCN,DRAM2,TMC6,TMEM50A,MFSD8,EIF1B,FAM111A,HAUS1,ZFP1,RNASEH2B,GSAP,ARGLU1,CCNL1,EEF1A1,DCLRE1B,ATG5,GDI2,SHOC2,TIA1,TMC8,UBA7,KRCC1,BBIP1,RGS10,DNAJC8,MFAP3,S100PBP,RPL27,MYNN,HLA-DQB2,ANKRD49,SLC25A45,ITPKB,USPL1,DPEP2,ODF2L,CD1D,GPR68,TSC22D3,GRK6,TTC13,SKAP1,HMGB2,DCK,LINS1,C9orf72,PSIP1,FNBP4,CLK4,ZUP1,ADPRM,DDX59,BTG2,DUSP2,NOSIP,SH3BP5,FIG4,SH3BGRL,SPOP,SACM1L,UBE2N,ZNF25,FBXL3,CEP120,RAMP2,RAB8A,ARPC4,SENP7,TIFA,DNASE1L3,FYTTD1,ERMARD,GNG7,CGAS,MRE11,RIPK3,TASOR,ZC3H10,LRR1,DFFB,DOK1,RAB42,SSPN,C21orf91,IL18R1,SPRTN,DENND2D,LIPT1,C4orf3,PNISR,GPS2,PCDH12,CFP,CRBN,CYBC1,EPB41,RSRP1,NGLY1,OGT,CRYBG1,THAP1,UNC50,PHYKPL,PNPLA8,RPS13,CBLN3,MTRF1,DENND6A,PHF11,ATP8B2,TMEM138,EDEM1,HMGB1,EML3,TRPM2,USP4,ADCY4,ABHD18,CWC25,BUD13,RPA2,CALHM2,FCHSD1,CENPC,DAXX,ARL6IP5,RNGTT,IRAK4,LRCH3,POPDC2,STRADA,DPT,FAM117A,JKAMP,ING1,DUSP28,ADPGK,FAM114A2,TPT1,ARHGAP27,ATXN7,MICAL1,WARS1,VNN2,PPP1R2,DNAJB9,DCLRE1C,CBFA2T3,SSH2,WDCP,L3HYPDH,HSH2D,CEPT1,ORMDL1,TESK2,OXNAD1,POGLUT1,MED28,PAN3,ZCCHC10,GLMN,TRMO,CYB561A3,CNIH1,BTN3A3,SIPA1,SEPTIN10,IFIT5,IL12RB1,ENG,FAS,POLD4,PARP11,HDAC7,BLOC1S2,SLC30A7,STAMBPL1,RGL1,NCF4,C12orf4,MAN2B1,PTEN,TAF13,ACADM,SNX6,VWF,CLEC2B,RASSF4,STK17B,MINDY3,PTRHD1,BCL10,RNF130,ADA2,SP140,AKNA,MAP4K1,PLXND1,TRAM2,ST8SIA4,EPB41L2,TREM2,GPATCH11,TSPAN4,FCGRT,OSTM1,TBXAS1,ELL,GON7,RBMS1,FYB1,LPXN,HLA-DMB,CYTIP,MS4A6A,BTF3L4,PTP4A2,MAP4K2,PIK3R3,CD79B,BZW1,SLC25A19,TNFRSF1B,NFKB1,HLX,LCP2,ARSB,FBLN5,ESAM,PIM2,ARHGEF1,STK10,GIT2,CD302,CD4,PLEK,SELPLG,IFFO1,TMEM176B,STYX,GZMK,NMI,RUNX3,PLEKHO1,ICAM2,PSMC6,CPVL,UBE2E2,RASAL3,JAK3,MEF2C,ETS1,HPS5,CYTH1,FGR,SH2B3,PILRA,CTSZ,ARPC5,ARHGAP4,SP110,RNF41,CD74,GNAI2,EAF2,CD209,DOCK8,PIGB,CD37,ATP5PB,QKI,KLRB1,MFNG,BCL6B,GNB4,OAZ1,CARD8,EBI3,PCDH12,SMIM12,ABI3,ACTR3,TMIGD3,GTF2H1,DAD1,TCL1A,RAB27A,PPP2R3C,ANKRD13A,CD79A,FLI1,ACAP1,VASH1,COTL1,BIN2,NECAP2,ISG20,C6orf62,MAX,EHBP1L1,SIGLEC1,LIPA,UCP2,SH2D3C,VEGFC,SLC2A6,CREM,SGMS1,CLEC2D,LGALS2,MAST3,TMEM176A,PFDN5,HCK,SEL1L3,IL27RA,SEC14L1,SAMHD1,RNF14,SIRPG,FOXP3,GNGT2,JKAMP,CNN3,LAG3,IL2RB,PSMA5,MAP3K14,TRAF1,FAM216A,ABI1,LCOR,MCUB,BPNT1,UVRAG,CYLD,LDB2,MSR1,ITGAL,L3HYPDH,SCARF1,SPI1,MAFB,LAT2,MYCBP,CXCL12,BTK,BTN2A1,OSBPL11,ITGB2,STING1,HAPLN3,HCLS1,HAVCR2,PIK3AP1,MPP1,RHOG,FKBP15,ADAMDEC1,CD19,STARD8,NCKAP1L,ADGRL4,PROS1,B2M,FPR3,SLCO2A1,IL18BP,HVCN1,LHFPL2,DOK3,HLA-DQB1,ATM,PPM1K,PTK2B,GNG2,TMC6,JAK1,MYO1G,F2R,CD72,CD27,ACE,RESF1,CLIC2,CPNE5,TEFM,PLA2G7,CMKLR1,TEK,PPP1R18,HK3,ADPRH,ARHGAP18,PLA2G2D,EMP3,TMEM106A,TMC8,LAPTM5,ARHGAP9,TRIM22,RCBTB2,CXCR6,IL6ST,MFSD1,TNFRSF13C,FERMT3,ROBO4,CD8A,APLNR,SLC46A3,LCP1,C1QB,C1R,CSF1R,SIGLEC10,ELMO1,EMB,CTSS,CD52,ARPC1B,C3AR1,CIITA,OSCAR,GIT2,GBGT1,VAV1,SLC9A9,NPAT,FCER1G,TRANK1,SLAMF6,NFKBID,LRRC8C,FMNL3,ARHGAP45,DRAM1,RFTN1,CD163,FCMR,TRIM5,CCR1,C2,HEG1,GPR132,LAIR1,RAC2,KCTD12,GMFG,PREX1,NINJ2,MAP3K3,TBC1D10C,SIT1,AP1S2,CCR5,RILPL2,CHN1,ATP6V0A2,AOAH,ST6GALNAC6,MED7,GPX8,C1QA,ANKRD13A,CNRIP1,RNF166,PIP4K2A,ANXA5,CLEC14A,RGS19,TCN2,C1QC,RAB37,TAGAP,PRXL2C,DOK2,ADAP2,OLFML2B,GIMAP8,FCHSD2,RAP1A,MYO1F,STK17A,TMEM119,FPR1,PTPN7,TPP1,FAM78A,PPM1M,ITK,CD93,DIPK2B,SLC7A7,LYSMD2,PLCB2,CD7,SEPTIN6,STRADA,GIMAP6,LRRC25,IGFLR1,ST3GAL2,PTAFR,CXCR4,ARHGAP17,MOB3A,S1PR1,SWAP70,RBP5,IL2RA,IL2RG,NAAA,PXK,C1orf54,GIMAP7,CD48,FMNL1,SAMSN1,LILRB2,SLCO2B1,CLEC10A,PARVG,VSIG4,C1S,SNAP23,CRIPT,ASF1A,PRCP,RIT1,TMEM218,HCFC2,LYSMD3,CTBS,MARCHF7,MIS12,RCHY1,ICE2,RGL1,TSNAX,FAM204A,MLX,PPHLN1,POC1B,DPH3,SMARCAD1,RNF139,IFIH1,TBC1D15,SREK1IP1,CDC42SE1,TMED5,FEM1B,MCEE,CTSO,NSL1,MFSD8,PRKRA,EID1,LMBRD1,SP4,DTD2,GOLT1B,FBXO4,LILRA5,EAPP,OSBPL8,CHMP5,TMEM128,TEFM,TRAM1,THAP6,ANKRA2,MOCS2,STAM2,SPPL2A,GCA,CAPZA1,SHOC2,GYG1,HSPA13,GMFB,CEP20,TTC33,PRIMPOL,C10orf88,PDGFD,BBIP1,GSKIP,LRRC40,CASP3,PRMT9,BBS10,BBS12,TMEM165,STXBP3,SNX3,LAMTOR3,TMED7,PTBP3,RARS2,TANK,FRG1,UBE2E1,TOR1AIP1,TMEM126B,TGDS,MORF4L1,LXN,GTPBP8,CLN5,COMMD10,TXNDC9,FUNDC2,PDCD10,UBE2B,BRMS1L,CMTR2,ZFAND6,STOM,KATNBL1,MTMR6,FBXL5,CCDC125,C12orf29,NDUFB5,DYNC1LI1,SPCS3,CUL2,C14orf119,METTL25,YIPF5,COX18,RECQL,PPT1,GIN1,C2orf49,LYRM7,C2orf76,TMEM50B,FBXL3,MIER1,ALG5,LAYN,SCLT1,HPS5,C3orf38,RAB30,ATG4A,ARPC5,PIGK,ELF2,TRIM23,GORAB,BBS4,CHMP2B,SPCS1,RHOA,CTSK,MANEA,RNFT1,PPP3CB,CCDC90B,WDR61,LEPROT,LUM,NKAPD1,MED7,VPS29,AZI2,ECHDC1,CTDSPL2,PPIL3,GTF2H1,FBXO9,ATG3,BLOC1S6,TMEM267,PNPLA8,YAF2,ADAP2,ABRAXAS1,RSL24D1,USP33,FBXO8,MRPS14,RPS27L,CD58,DNAJB14,SNX1,ARL6,C4orf33,TBCCD1,AHR,RAB33B,FBXO3,CLEC7A,ITK,IFNGR2,ABHD18,UBE2D3,MAGT1,BLZF1,ARL15,BORCS7,COMMD8,TTC5,RAP1GDS1,C19orf12,RNF115,NDUFB6,NCOA4,SLC35A5,CIAO2A,GNPDA2,TADA1,BCAP29,LYPLA1,ARRDC3,DNAJB9,PDE6D,KANSL2,BMT2,SLC25A46,FPGT,OXNAD1,DDX17,PEX2,ANAPC10,MED31,TRAPPC13,CREB1,FASTKD3,F13A1,CWF19L2,ZNF41,HAVCR2,SNIP1,VMP1,TAOK3,ZNF45,CHD1,EML4,ZNF22,ORC2,PTPN22,SIKE1,C2orf42,ELF1,RCHY1,SCAF11,ZFC3H1,TUT7,PIBF1,DTX3L,CWC22,TM2D1,EPC1,PPHLN1,SCP2,TLNRD1,KPNA3,KCTD20,FLT1,SMC6,ARID4A,RASSF4,GNA13,ANGEL2,SLC25A24,PAXBP1,KIAA0586,OBI1,GOLT1B,PAK2,GNPTAB,SOCS4,CMTM6,OSBPL8,CREBRF,ZFP14,THAP6,TAB2,HOOK3,LBR,GDAP2,PIK3C2B,ROCK1,CNOT2,TBK1,TIA1,SCAMP2,OTUD4,ABHD13,UNC13D,ACAP2,DMXL2,TMX3,RPL27,STX2,SPATA13,RFX5,ANKRD49,TRIM13,TUBD1,ABHD3,USPL1,SPG11,RAPGEF6,RSBN1L,POLK,IPMK,RAB2B,CNOT6L,LNPEP,WAPL,TRAK2,C1orf131,SLC25A32,TPP2,ARHGEF2,HERPUD2,HP1BP3,MORC3,FAM76B,RECQL,ATAD2B,AGA,ARRDC2,PPIL4,NUP160,AGTPBP1,RB1,SCLT1,N4BP2L1,TRIM5,ZDHHC6,AKAP10,CEP19,ADAM10,RAB30,FBXO5,EXOC5,LATS1,RAP2C,BTBD10,RALGPS2,CHST15,TMEM167B,MRE11,RIOK1,PIGB,SLC25A30,SKIL,NFYB,NCBP3,CHURC1,RICTOR,TEP1,RASSF3,PPP1R11,MED7,MIS18BP1,TMEM35B,SENP1,TRMT13,MCPH1,RAB27A,SF3B1,GTF2E1,ELK4,RSBN1,KLHL28,YAF2,RNF34,PACC1,PCGF6,DPP8,TRA2B,PRPF4B,CNOT9,ARL5A,CBLB,ATG12,ELP4,ICAM3,HMGB1,SELENOP,SFMBT2,DNAJB14,PDCL,SNX1,TRAPPC8,C4orf33,TNFRSF9,ADGRA2,ETNK1,PMP22,UBA6,ITK,MED17,KBTBD2,SAMD9,FRYL,SP3,ARID4B,CD47,LYST,GABPA,MYD88,ZC3H7A,VEZT,CYBRD1,PLEKHG2,SLC4A7,EXOG,FAM214A,VPS13C,SEMA3G,ZNF71,CSGALNACT2,MBTD1,FAM13B,CIAO2A,LARP7,BAZ1A,MRPL49,WASHC4,GOPC,DCUN1D1,FAM107B,HIC1,NSUN3,RC3H1,IFI35,GLRX,SGPP1,SMURF2,TPM3,CCNT2,ZDHHC20,MEX3C,SLF2,USP16,PARP15,NEDD1,SMCO4,JDP2,FAM162B,IFIT5,RAB20,GPR4,GBP3,GNAI3,CX3CR1,TDP2,CYRIB,GALC,DTX3L,PARP9,UBD,IL32,TMEM50A,LYVE1,CDC27,GJA5,SIGLEC7,MMP19,SEPTIN4,TP53INP1,CKLF,DCLRE1B,TMEM9B,PLSCR4,HEATR3,PHF5A,ANXA7,RSAD2,PSME1,KCNJ8,CCSAP,DEGS1,CHSY1,LYRM1,TM4SF18,TNFSF10,CMPK2,RNF149,PEX11B,CLEC4E,MYL12A,HEXA,HSPA14,CXCL16,VASP,NIP7,VAMP3,SNX17,BID,MYL12B,SLC40A1,RNASE1,ZMYND15,PDGFB,SEPSECS,PSMB9,SRGAP2,ACOT9,OLFML3,RHBDF2,GABARAP,SLC49A3,CD163,TRAPPC6B,TGFB3,PEX3,GAB3,TMEM150B,CEACAM21,PTPN2,SLC38A6,HSPB11,TAP2,RNF19A,CCM2L,FES,TMEM123,EHD4,STK38,NLRC4,SIRPB2,MAN2A1,LTV1,ANKRD22,RABGAP1L,CD163L1,TLR8,TAP1,GNG10,AGAP2,RSRP1,TPRKB,ATG3,FKBP11,GASK1B,GAL3ST4,PSMB8,PEA15,FEZ2,DNTTIP2,B9D2,APOL4,SVBP,LIPA,SMIM14,IRAG2,A2M,RPS27L,TIGAR,TOR3A,CLEC12A,CZIB,S100A4,DDX20,BUB3,TMEM59,PSTPIP2,KLHL6,PLXDC1,GNG5,CAMK1,CCDC28A,RSU1,NOSTRIN,MPC1,SLC35A5,CXCL10,DOCK4,SNX5,C4orf46,RRAS,CD164,SMPDL3A,CDC14A,MGAT4A,ARRB1,ARL4C,HACD4,DDX58,XAF1,THSD1,RUBCNL,S1PR3,CD180,DEF6,KDR,PTPN22,WDFY1,SKAP2,MCOLN2,STAT2,GZMM,MOB3C,JCHAIN,ATM,LAMP3,LILRB4,TBRG1,ATP8A1,MSL3,PAG1,CASP1,PLVAP,ARHGAP30,ST3GAL5,PICALM,XRN1,PIK3IP1,APOL2,IL18,MOB1A,SIRPA,EDNRB,ENPP2,DOCK10,APOL3,TASL,NLRP1,ADAM19,IRF1,PECAM1,IKZF3,IRF2,IL15RA,RIPOR2,HLA-DOB,DGKA,CLEC1A,GBP1,SGTB,LST1,UBE2J1,FYN,MYCBP2,ATP11C,ANXA6,TMEM273,RCSD1,FLVCR2,ARAP2,SP100,LIX1L,CTSC,ARRB2,DAB2,PLPP1,FOXO1,CCDC82,IFNGR1,ADD3,RASSF2,NPAT,GZMH,CCDC50,CARD6,CALHM6,HLA-DPA1,INPP5B,DPYD,STAT1,ITGAE,CCDC80,RB1,PDCD1,SH3GLB1,PNRC1,PPWD1,DSE,MKNK1,CD247,CCR7,TAP2,CD69,GMIP,SYT11,RIPK3,CYB5R4,OSTF1,EPS15,DIPK1A,BNIP2,SIGLEC8,HLA-DRB1,NCBP3,TNFAIP3,LGMN,EPSTI1,TNFRSF17,SMIM12,PIK3R5,CXCR3,NFAM1,MS4A1,MAF,AMPD3,TNFSF8,PTPN6,SEPTIN7,IL4R,HLA-E,SH2D2A,RASGEF1B,TM6SF1,XCL2,C3,VIM,GPSM3,ADGRF5,FPR1,PRKD3,NCK1,MARCHF1,SIGLEC9,HLA-DPB1,ADCY4,PTPRB,CCPG1,HLA-DMA,BIRC3,LPAR1,ABI3BP,TNFRSF4,MPEG1,ECSCR,GBP5,SPARCL1,ANKRD44,GTDC1,SLC15A4,DENND1C,STX7,NR1H3,STK4,TMEM243,TFEC,SH3KBP1,STAT4,CD84,C19orf38,SPOCK2,LTB | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CAMSAP3,OPLAH,TSC2,IFT140,TECR,TRAP1,PELP1,DCAKD,MECR,RABL6,NPRL3,NDUFV1,BAIAP2,TMC4,HDGFL2,PCYT2,COASY,GIT1,TOLLIP,MYH14,FAHD2B,DDX41,ALDOA,CDK16,THOP1,RECQL5,DDR1,KRT19,GRHL2,PKP3,TMEM161A,CPSF1,MLF2,EIF4G1,SLC25A39,FASN,ANKRD9,FAM234A,EVPL,PDHA1,MROH1,DOHH,GAPDH,FOXK2,CTTN,AXIN1,AP1M2,FZR1,PIGQ,LLGL2,DBNDD1,THAP4,SPTBN2,RNF208,RAB25,TBL3,CNKSR1,SCAP,SLC6A8 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000268001 | ENST00000602172 | exon_skip_48327 | chr10:26771074-26771089 | -6.41 | -1.2820 | ABI1 | ENST00000376142 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_66185 | chr11:124626472-124626609 | -14.75 | -0.1239 | TBRG1 | ENST00000441174 | Frame-shift | | ENSG00000268001 | ENST00000602172 | exon_skip_368285 | chr22:29329711-29329720 | -4.35 | -1.0875 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_33516 | chr1:156938417-156938513 | -12.77 | -0.1435 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_436488 | chr5:96726793-96726859 | -9.13 | -0.2123 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_445633 | chr5:151110626-151110644 | -5.90 | -0.5900 | ANXA6 | ENST00000354546 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_482144 | chr8:22539468-22539498 | -6.27 | -0.2162 | PPP3CC | ENST00000240139 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268001 | ENST00000602172 | exon_skip_48305 | chr10:26759061-26759238 | -17.61 | -0.1144 | ABI1 | ENST00000376142 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_48713 | chr10:34336198-34336243 | -9.86 | -0.2348 | PARD3 | ENST00000374789 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_95025 | chr12:79805591-79805768 | -18.25 | -0.1155 | PPP1R12A | ENST00000261207,ENST00000450142 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_434332 | chr5:34813573-34813660 | -10.50 | -0.1667 | RAI14 | ENST00000265109,ENST00000428746,ENST00000503673 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_482403 | chr8:27445793-27445919 | -14.33 | -0.1246 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_484062 | chr8:73030335-73030395 | -12.19 | -0.2902 | TERF1 | ENST00000276603 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_499791 | chr9:128627924-128627942 | -5.62 | -0.3513 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_3510 | chr1:29060421-29060484 | -7.78 | -0.3242 | EPB41 | ENST00000343067,ENST00000373798 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_13507 | chr1:162592731-162592782 | -6.69 | -0.1858 | UAP1 | ENST00000271469,ENST00000367925 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_297015 | chr18:58710920-58710953 | -9.18 | -0.5100 | MALT1 | ENST00000348428 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_378912 | chr3:152446703-152446757 | -8.69 | -0.2228 | MBNL1 | ENST00000282486,ENST00000463374 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_499771 | chr9:128592982-128593042 | -10.67 | -0.2667 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_98384 | chr12:124327408-124327633 | -26.66 | -0.1568 | NCOR2 | ENST00000405201 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_146683 | chr16:85780378-85780473 | -11.49 | -0.1574 | EMC8 | ENST00000253457 | Frame-shift | | ENSG00000268001 | ENST00000602172 | exon_skip_423795 | chr4:55888887-55888932 | -7.83 | -0.2008 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000268001 | ENST00000602172 | exon_skip_379903 | chr3:184180644-184180650 | -3.29 | -0.5483 | AP2M1 | ENST00000292807 | In-frame |
| lncRNA targets by miRNA. |
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| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48255795-48255906 | 203.00 | -89.13 | 110 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48255917-48256016 | 201.00 | -86.32 | 98 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48256036-48256131 | 170.00 | -92.55 | 101 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48257068-48257158 | 161.00 | -87.74 | 91 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48256343-48256428 | 160.00 | -71.90 | 75 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48257227-48257317 | 159.00 | -71.10 | 77 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48257389-48257483 | 158.00 | -82.13 | 79 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48256837-48256949 | 157.00 | -75.76 | 106 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48256233-48256321 | 155.00 | -63.88 | 92 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48256638-48256728 | 145.00 | -69.69 | 93 | NA | | ENSG00000268001 | hsa-mir-200b | ENST00000602172 | chr19:48255676-48255769 | 143.00 | -75.13 | 93 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000268001 | ENST00000602172 | KRT19 | ENSG00000171345 | ENST00000361566 | -0.1617 | 286 | LUSC | - | | ENSG00000268001 | ENST00000602172 | RNF208 | ENSG00000212864 | ENST00000392827 | -0.1132 | 1138 | - | GBM | | ENSG00000268001 | ENST00000602172 | RNF208 | ENSG00000212864 | ENST00000391553 | -0.1132 | 1138 | - | GBM | | ENSG00000268001 | ENST00000602172 | CAMSAP3 | ENSG00000076826 | ENST00000160298 | -0.8486 | 381 | - | GBM | | ENSG00000268001 | ENST00000602172 | CAMSAP3 | ENSG00000076826 | ENST00000446248 | -0.1273 | 1203 | - | GBM | | ENSG00000268001 | ENST00000602172 | MYH14 | ENSG00000105357 | ENST00000440075 | -0.1932 | 330 | - | GBM | | ENSG00000268001 | ENST00000602172 | GIT1 | ENSG00000108262 | ENST00000578266 | -0.9475 | 131 | - | GBM | | ENSG00000268001 | ENST00000602172 | EIF4G1 | ENSG00000114867 | ENST00000382330 | -0.2102 | 362 | LUSC | - | | ENSG00000268001 | ENST00000602172 | FASN | ENSG00000169710 | ENST00000580382 | -0.1066 | 1 | - | GBM | | ENSG00000268001 | ENST00000602172 | MROH1 | ENSG00000179832 | ENST00000534366 | -0.3110 | 317 | - | GBM | | ENSG00000268001 | ENST00000602172 | MROH1 | ENSG00000179832 | ENST00000528919 | -0.1324 | 287 | - | GBM | | ENSG00000268001 | ENST00000602172 | MROH1 | ENSG00000179832 | ENST00000326134 | -0.1257 | 1298 | - | GBM | | ENSG00000268001 | ENST00000602172 | MROH1 | ENSG00000179832 | ENST00000544576 | -0.1154 | 289 | - | GBM | | ENSG00000268001 | ENST00000602172 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1076 | 1234 | - | GBM | | ENSG00000268001 | ENST00000602172 | MLF2 | ENSG00000089693 | ENST00000542154 | -0.6659 | 1422 | LUSC | - | | ENSG00000268001 | ENST00000602172 | GAPDH | ENSG00000111640 | ENST00000396856 | -0.1064 | 300 | LUSC | - | | ENSG00000268001 | ENST00000602172 | GAPDH | ENSG00000111640 | ENST00000396861 | -0.1064 | 281 | LUSC | - | | ENSG00000268001 | ENST00000602172 | GAPDH | ENSG00000111640 | ENST00000396859 | -0.1045 | 43 | LUSC | - | | ENSG00000268001 | ENST00000602172 | GAPDH | ENSG00000111640 | ENST00000396858 | -0.1192 | 43 | LUSC | - | | ENSG00000268001 | ENST00000602172 | DOHH | ENSG00000129932 | ENST00000587122 | -0.1490 | 377 | - | GBM | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000338110 | -0.1057 | 217 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000627059 | -0.1057 | 211 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000395248 | -0.1057 | 211 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000566897 | -0.1057 | 218 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000569545 | -0.3530 | 449 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000563060 | -0.1057 | 217 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000564546 | -0.1057 | 211 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000569798 | -0.1059 | 29 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000395240 | -0.1097 | 249 | LUSC | - | | ENSG00000268001 | ENST00000602172 | ALDOA | ENSG00000149925 | ENST00000565355 | -0.1237 | 214 | LUSC | - | | ENSG00000268001 | ENST00000602172 | SLC6A8 | ENSG00000130821 | ENST00000430077 | -0.2260 | 1223 | LUSC | - | | ENSG00000268001 | ENST00000602172 | SPTBN2 | ENSG00000173898 | ENST00000611817 | -0.2774 | 1271 | LUSC | GBM | | ENSG00000268001 | ENST00000602172 | BAIAP2 | ENSG00000175866 | ENST00000575841 | -0.1154 | 1476 | - | GBM | | ENSG00000268001 | ENST00000602172 | BAIAP2 | ENSG00000175866 | ENST00000416299 | -0.1126 | 7 | - | GBM | | ENSG00000268001 | ENST00000602172 | BAIAP2 | ENSG00000175866 | ENST00000572498 | -0.1170 | 73 | - | GBM |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,BIN2 | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,NCKAP1L | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,P2RY8 | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,FYB1 | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,SELL | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,TAGAP | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,TMEM131L | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,SLA | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,GPSM3 | TGCT,CHOL,READ,PAAD,THYM | | ENSG00000268001 | CARD8-AS1,hsa-mir-200b,SAMSN1 | TGCT,CHOL,READ,PAAD,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268001.1 | ENST00000602172.1 | 113 | 13 | 354 |
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