Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000267838

Summary for AC008746.12

Gene summary

Gene information	Ensembl ID	ENSG00000267838
	Gene symbol	AC008746.12
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

Top

Structure and expression level for AC008746.12

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000267838	4.072560e+01	1.484205e+00	3.765430e-01	3.941660e+00	8.090000e-05	3.605230e-04	UP	CHOL
ENSG00000267838	5.927281e+01	2.513478e+00	1.806732e-01	1.391174e+01	5.380000e-44	1.020000e-42	UP	KIRC
ENSG00000267838	4.199232e+01	1.397064e+00	2.907667e-01	4.804758e+00	1.550000e-06	1.310000e-05	UP	BLCA
ENSG00000267838	4.812914e+01	1.223054e+00	2.561994e-01	4.773836e+00	1.810000e-06	7.520000e-06	UP	KIRP
ENSG00000267838	5.930945e+01	1.380478e+00	1.666251e-01	8.284933e+00	1.180000e-16	1.950000e-15	UP	PRAD
ENSG00000267838	3.194062e+01	1.547821e+00	1.956197e-01	7.912395e+00	2.520000e-15	2.350000e-14	UP	COAD
ENSG00000267838	3.302416e+01	2.505364e+00	3.522050e-01	7.113368e+00	1.130000e-12	5.450000e-11	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267838	6.402719e-01	2.175168e-06	CHOL	2.886926e-05
ENSG00000267838	3.139679e-01	2.243285e-15	KIRC	9.706523e-15
ENSG00000267838	3.144960e-01	4.088848e-14	PRAD	2.478548e-13

Top

lncRNA-Protein interaction for AC008746.12

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267838	ENST00000599382	AC008746.12	ENSG00000130254	SAFB2	38.82	90.8788	Q14151	TF,RBP	NA
ENSG00000267838	ENST00000599382	AC008746.12	ENSG00000167232	ZNF91	27.46	90.4115	Q05481	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267838	ENST00000599382	AC008746.12	ENSG00000122965	RBM19	38.83	90.0071	Q9Y4C8	RBP	NA
ENSG00000267838	ENST00000599382	AC008746.12	ENSG00000130254	SAFB2	38.82	90.8711	Q14151	TF,RBP	NA
ENSG00000267838	ENST00000599382	AC008746.12	ENSG00000004534	RBM6	37.92	91.1739	P78332	RBP	NA

Top

lncRNA-DNA interaction for AC008746.12

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for AC008746.12

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SMAD1,SF3A1,HBP1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000267838	ENST00000599382	exon_skip_7523	chr1:78660553-78660654	-12.59	-0.1431	IFI44	ENST00000370747	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_16568	chr1:201989382-201989531	-18.17	-0.1245	RNPEP	ENST00000295640	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_41813	chr10:68337857-68337996	-17.99	-0.1681	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_66482	chr11:126274926-126275021	-11.83	-0.1344	FOXRED1	ENST00000263578	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_87733	chr12:120571190-120571291	-14.66	-0.2365	RNF10	ENST00000325954	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_92074	chr12:50142052-50142110	-6.63	-0.6027	CERS5	ENST00000317551	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_95407	chr12:95040475-95040597	-14.82	-0.1300	NR2C1	ENST00000333003	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_111863	chr14:23565815-23565892	-14.06	-0.2424	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_114365	chr14:74290026-74290118	-14.22	-0.1546	ABCD4	ENST00000356924	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_114376	chr14:74293153-74293248	-13.49	-0.1708	ABCD4	ENST00000356924	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_133217	chr16:8635038-8635079	-12.60	-0.3500	METTL22	ENST00000381920	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_290158	chr17:42953723-42953778	-8.00	-0.3810	AARSD1	ENST00000427569	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_300663	chr19:1425877-1425960	-10.72	-0.1848	DAZAP1	ENST00000233078	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_302168	chr19:10680345-10680443	-12.58	-0.1655	ILF3	ENST00000590261	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_319223	chr19:43526200-43526349	-21.59	-0.1599	ETHE1	ENST00000292147	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_327433	chr2:86125794-86125880	-9.33	-0.1505	PTCD3	ENST00000254630	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_332658	chr2:203272669-203272748	-9.09	-0.1181	CYP20A1	ENST00000356079	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_340545	chr2:75680192-75680314	-7.00	-0.1458	GCFC2	ENST00000321027	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_370518	chr22:50247691-50247776	-18.34	-0.2478	HDAC10	ENST00000216271	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_374497	chr3:49999439-49999513	-9.33	-0.2827	RBM6	ENST00000266022	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_377198	chr3:123130479-123130616	-14.08	-0.1035	PDIA5	ENST00000316218	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_380242	chr3:186784961-186785101	-15.01	-0.3127	EIF4A2	ENST00000323963	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_382458	chr3:38131595-38131638	-9.07	-0.5039	ACAA1	ENST00000333167	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_470226	chr7:103307595-103307708	-11.36	-0.1209	PMPCB	ENST00000249269	Frame-shift
ENSG00000267838	ENST00000599382	exon_skip_476549	chr7:76013741-76013887	-13.16	-0.1207	STYXL1	ENST00000248600,ENST00000359697,ENST00000431581	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for AC008746.12

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000267838	ENSG00000004534	RBM6	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	READ,PRAD,THYM,PAAD,THCA
ENSG00000267838	ENSG00000004534	RBM6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	READ,PRAD,THYM,PAAD,THCA

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267838.2	ENST00000599382.2	79	98	334

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential