 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RXRB,CIRBP,OVOL2,ZNF44,MZF1,HES1,GATA6,RNPC3,UNC50,FOXJ1,IRX3,ZNF69,CENPT,HNF1B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_340814 | ENSG00000267530.2 | chr19 | 784313 | + | lincRNA | AC006273.5 | ENST00000606242.1 | lincRNA | AC006273.5-002 | | LncEditing_340854 | ENSG00000267530.2 | chr19 | 784404 | + | lincRNA | AC006273.5 | ENST00000606242.1 | lincRNA | AC006273.5-002 | | LncEditing_340859 | ENSG00000267530.2 | chr19 | 784999 | + | lincRNA | AC006273.5 | ENST00000586061.1 | lincRNA | AC006273.5-001 | | LncEditing_340860 | ENSG00000267530.2 | chr19 | 785000 | + | lincRNA | AC006273.5 | ENST00000586061.1 | lincRNA | AC006273.5-001 | | LncEditing_340861 | ENSG00000267530.2 | chr19 | 785002 | + | lincRNA | AC006273.5 | ENST00000586061.1 | lincRNA | AC006273.5-001 | | LncEditing_340870 | ENSG00000267530.2 | chr19 | 785068 | + | lincRNA | AC006273.5 | ENST00000586061.1 | lincRNA | AC006273.5-001 |
| Edited-associated DElncRNAs in cancer. |
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| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000267530 | LncEditing_340860 | KIRC | chr19_785000_+ | 5.038950e+00 | 2.427174e+00 | 9.489054e-01 | 7.997565e+00 | 1.269041e-15 | 2.461874e-15 | UP | | ENSG00000267530 | LncEditing_340860 | MESO | chr19_785000_+ | 5.496803e+00 | 3.716753e+00 | 1.771323e+00 | 2.779261e+00 | 5.448268e-03 | 6.896073e-03 | UP | | ENSG00000267530 | LncEditing_340814 | CHOL | chr19_784313_+ | 1.681325e+01 | 8.017314e+00 | 9.359719e-01 | 2.164478e+00 | 3.042766e-02 | 3.453951e-02 | UP | | ENSG00000267530 | LncEditing_340854 | CHOL | chr19_784404_+ | 1.792118e+01 | 7.878823e+00 | 8.434453e-01 | 2.466499e+00 | 1.364413e-02 | 1.933261e-02 | UP | | ENSG00000267530 | LncEditing_340861 | CHOL | chr19_785002_+ | 1.122699e+01 | 6.997278e+00 | 1.466050e+00 | 2.392409e+00 | 1.673817e-02 | 2.237676e-02 | UP | | ENSG00000267530 | LncEditing_340861 | OV | chr19_785002_+ | 4.128402e+00 | 1.934847e+00 | 9.146084e-01 | 7.761263e+00 | 8.408756e-15 | 2.290919e-14 | UP | | ENSG00000267530 | LncEditing_340859 | PAAD | chr19_784999_+ | 3.278342e+00 | 1.447918e+00 | 8.481858e-01 | 6.625619e+00 | 3.457953e-11 | 2.112495e-10 | UP | | ENSG00000267530 | LncEditing_340861 | PAAD | chr19_785002_+ | 3.530244e+00 | 1.670901e+00 | 9.266621e-01 | 5.061955e+00 | 4.149795e-07 | 9.113276e-07 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000267530 | LncEditing_340861 | -3.269774e-01 | 1.798189e-02 | 1.980747e-02 | | ENSG00000267530 | LncEditing_340859 | -9.780336e-01 | 3.895265e-03 | 1.655488e-02 | | ENSG00000267530 | LncEditing_340859 | -5.984341e-01 | 9.759108e-04 | 5.313292e-03 | | ENSG00000267530 | LncEditing_340861 | -8.429969e-01 | 2.955591e-04 | 2.068914e-03 | | ENSG00000267530 | LncEditing_340859 | -5.802916e-01 | 6.981362e-05 | 2.521051e-03 | | ENSG00000267530 | LncEditing_340860 | -7.728634e-01 | 3.204758e-03 | 1.098774e-02 | | ENSG00000267530 | LncEditing_340861 | -5.888503e-01 | 1.639909e-02 | 2.802038e-02 | | ENSG00000267530 | LncEditing_340870 | -7.248857e-01 | 2.713842e-02 | 3.715665e-02 | | ENSG00000267530 | LncEditing_340859 | -3.215179e-01 | 3.786823e-02 | 4.192554e-02 | | ENSG00000267530 | LncEditing_340861 | -3.781910e-01 | 1.760219e-02 | 2.153952e-02 | | ENSG00000267530 | LncEditing_340859 | -5.256935e-01 | 3.764892e-05 | 4.455122e-04 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000267530.2 | ENST00000606242.1 | 113 | 787 | 446 | | ENSG00000267530.2 | ENST00000586061.1 | 142 | 700 | 272 |
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