 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | JUN,ELF4,TGIF1,PHF1,KLF3,MYC,RBM6,ZBED5,JDP2,GLI4,PBX2,RBM39,HLX,TTC14,NOL3,HSF4,KLF6,RBM5,TEAD3,IRF3,JMJD6,RC3H1,CIRBP,EGR2,RBMS1,MZF1,KLF10,MYSM1,HES1,SGSM2,DOT1L,SRSF4,KLF2,TBX2,PITX1,DMTF1,FOSL2,TRA2A,ZNF69,NR4A3,RUNX1,FUBP1,MBD6,ZGPAT,NFKB1,NR4A2,NR2C1,DDX17,MYNN,MEF2C,RARG,PBX4,BCL6B,MBD2,ZNF83,IRF7,SOX7,EGR3,USF1,ATF3,NFIL3,RNPC3,IRF1,ZNF34,THOC1,RBM33,FOSL1,ZNF25,MOV10,PCGF2,TEAD2,SRRM2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DOT1L,JUND,DDX17,HSF4,MZF1,TEAD2,EGR1,NOL3,GRB7,RBM5,FOSL1,IRF5,HES1,SOX7,FOS,NR4A3,RBMS2,JMJD6,SRSF5,FUBP1,KLF2,MYNN,ZNF69,ZNF83,MAFK,RBMS1,SYNJ2,USF1,RUNX1,RBM6,PRRX1,PBX2,ELF4,SRRM2,AGO4,PBX4,FOSL2,RBM39,TRA2A,IRF3,CIRBP,TGIF1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000267519 | ENST00000587762 | exon_skip_309204 | chr19:49181348-49181461 | -20.68 | -0.2008 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_2106 | chr1:17648553-17648675 | -23.19 | -0.2274 | ARHGEF10L | ENST00000361221 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_41813 | chr10:68337857-68337996 | -17.10 | -0.1474 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_53559 | chr10:101793912-101793998 | -13.63 | -0.4130 | OGA | ENST00000361464 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_62623 | chr11:69079833-69079883 | -11.91 | -0.2647 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_74009 | chr11:64773429-64773505 | -13.88 | -0.3155 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_87733 | chr12:120571190-120571291 | -18.09 | -0.2349 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_92074 | chr12:50142052-50142110 | -8.39 | -0.1554 | CERS5 | ENST00000317551 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_95407 | chr12:95040475-95040597 | -16.82 | -0.1515 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_110959 | chr14:20372732-20372857 | -15.77 | -0.1447 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_114365 | chr14:74290026-74290118 | -16.08 | -0.2265 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_133217 | chr16:8635038-8635079 | -12.40 | -0.3758 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_152655 | chr17:42514288-42514460 | -22.22 | -0.1415 | ATP6V0A1 | ENST00000393829 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_290158 | chr17:42953723-42953778 | -9.72 | -0.2558 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_302168 | chr19:10680345-10680443 | -15.27 | -0.1678 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_353131 | chr20:58669290-58669453 | -26.52 | -0.1829 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_357254 | chr20:44622587-44622652 | -15.18 | -0.2919 | ADA | ENST00000372874 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_370518 | chr22:50247691-50247776 | -22.58 | -0.2823 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_374497 | chr3:49999439-49999513 | -14.34 | -0.2313 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_380242 | chr3:186784961-186785101 | -19.83 | -0.1983 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_382458 | chr3:38131595-38131638 | -9.60 | -0.5647 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_442657 | chr5:74730259-74730398 | -15.34 | -0.1395 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_444499 | chr5:138164086-138164133 | -9.54 | -0.2726 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_446758 | chr5:178212972-178213103 | -19.19 | -0.2063 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_466137 | chr7:48103296-48103411 | -15.15 | -0.1377 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_470226 | chr7:103307595-103307708 | -15.56 | -0.1511 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_11029 | chr1:154989559-154989707 | -24.30 | -0.1774 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_13857 | chr1:168038370-168038488 | -14.37 | -0.1356 | DCAF6 | ENST00000312263 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_127618 | chr15:58890280-58890461 | -15.72 | -0.1048 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_364260 | chr22:29291561-29291599 | -11.70 | -0.4179 | EWSR1 | ENST00000397938 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_466113 | chr7:48099669-48099787 | -12.30 | -0.1281 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000267519 | ENST00000587762 | exon_skip_374552 | chr3:50104247-50104308 | -8.80 | -0.1600 | RBM5 | ENST00000347869 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835429-13835509 | 179.00 | -80.71 | 91 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835647-13835742 | 167.00 | -90.35 | 92 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835211-13835306 | 164.00 | -86.50 | 94 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13836065-13836181 | 164.00 | -106.48 | 107 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835888-13835979 | 162.00 | -84.23 | 91 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13834769-13834876 | 156.00 | -109.84 | 106 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835977-13836075 | 156.00 | -96.83 | 86 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13834548-13834642 | 153.00 | -91.04 | 91 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835503-13835596 | 152.00 | -89.28 | 99 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835058-13835149 | 151.00 | -109.69 | 91 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835294-13835396 | 142.00 | -97.62 | 99 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13834944-13835045 | 141.00 | -97.97 | 100 | NA | | ENSG00000267519 | hsa-mir-616 | ENST00000587762 | chr19:13835778-13835877 | 141.00 | -92.45 | 98 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000267519 | MIR23AHG,hsa-mir-616,ZNF25 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,DOCK1 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,RYK | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,ENTPD1 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,BMPR2 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,PLEKHG3 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,F2R | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,TMUB2 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,RUSC2 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,SKI | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,KCTD3 | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,RARG | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,VWA5A | KICH,TGCT,CHOL,DLBC,THYM | | ENSG00000267519 | MIR23AHG,hsa-mir-616,PDGFB | KICH,TGCT,CHOL,DLBC,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000267519.3 | ENST00000587762.1 | 103 | 11 | 322 |
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