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lncRNA: ENSG00000267254

Summary for ZNF790-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000267254
	Gene symbol	ZNF790-AS1
	Gene name	ZNF790 antisense RNA 1
	HGNC	27617
	Entrez ID	284408
	Gene type	antisense
	Synonyms	ZNF790-AS1\|19q13.12
	UniProtAcc

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Structure and expression level for ZNF790-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000267254	6.057858e+01	2.006412e+00	5.134826e-01	3.907459e+00	9.330000e-05	4.104070e-04	UP	CHOL

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267254	3.479686e-01	1.928718e-03	ACC	9.245919e-03
ENSG00000267254	5.698523e-01	4.389690e-05	CHOL	1.685721e-04
ENSG00000267254	-4.111404e-01	6.271526e-05	KICH	1.113403e-04

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lncRNA-Protein interaction for ZNF790-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267254	ENST00000589556	ZNF790-AS1	ENSG00000164190	NIPBL	44.76	91.7446	Q6KC79	Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267254	ENST00000589556	ZNF790-AS1	ENSG00000137776	SLTM	47.16	90.3024	Q9NWH9	RBP	NA

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lncRNA-DNA interaction for ZNF790-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

TCEA2,PRPSAP2,MFSD8,KRT10,ABHD17A,IFT22,TXNL4B,FASTKD3,IFT52,CIRBP,DYNC2LI1,MZF1,WDR83OS,TTC31,MAPK8IP3,LYSMD4,SUGP2,PPP2R3B,N4BP2L2,BCS1L,DMTF1,L3HYPDH,CTU1,FAM193A,CXXC5,HLTF,PIGG,TRAPPC12,ULK3,SERTAD3,KMT2B,METTL5,ZFP14,CENATAC,WDR5B,SNRPA,ST7L,SAFB2,PPP1R37,KCTD13,MSANTD2,TUBGCP6,CCDC14,FAM200A,OSER1,LZTFL1,ABITRAM,CLK4,C6orf136,ZBED5,EIF2B5,UBA2,TTC14,SLC2A11,SUDS3,GKAP1,FAM218A,SUGP1,TAZ,SPG7,DNTTIP2,FAM104B,C19orf44,CAPN7,SIAH1,SCYL3,DNAJC2,CLCN6,PPIP5K1,RAMAC,OGT,CCNB1IP1,ZIK1,COX19,CLK2,MYEF2,BRSK1,PPIL4,UQCC2,ILKAP,LYRM4,BLZF1,ASH1L,MPLKIP,POLG2,DHX34,AP3M2,RING1,CHKB,IFT81,TMEM242,CEP89,METTL17,RIC8B,KATNAL1,ANAPC10,BBIP1,SNHG32,CBY1,WDR83,OSGEP,CLK1,MRRF,ITGB3BP,GABPB1,RABL2A,ANKRD39,WASHC3,OFD1,ACYP1,CASP9,SLC25A29,IFT172,FBXO17,CFAP298,XPNPEP3,MBD5,MIS12,TTF1,CAMKMT,INO80E,FANCF,NAPB,C3orf62,YJU2,ZFP82,SETD5,C19orf54,ZFP62,ALKBH2,ZBED8,ORMDL1,ZNF45,YTHDC1,C18orf21,C22orf39,C12orf73,DONSON,AGER,MBD4,NKAPD1,AGO3,ORC2,SSBP2,SPOUT1,SRSF2,C1orf52,PASK,TSEN54,LRRC37B,DHX35,SUPT5H,ABHD16A,ATG4B,SUPT20H,CCDC191,CHST10,NXF1,DCUN1D2,TSSK6,EIF2B1,TNKS,KIF9,UQCC1,NR2C2,PAN2,C2orf76,LRTOMT,MOAP1,GIGYF1,ZNF14,MBTPS1,SCRN3,FAM193B,COG7,CIR1,ZFC3H1,ARHGAP33,MBTD1,DMAC2L,DNASE1,SEPSECS,HEXD,TNPO2,GAS8,VCPKMT,CEP192,SCNN1D,CCDC24,MKRN2,SEPHS1,CDK7,KAT14,EIF2AK2,ZNF69,TDRP,ATF7IP,KIF12,ERCC5,ZFP3,MARCHF6,ELP2,IQCC,CASTOR3,ZNF30,SKA2,KBTBD6,OARD1,TMEM254,FAM172A,THADA,CEP20,FANCL,GLI4,TTC17,BRAP,DPY19L3,LENG8,SH2B1,SMYD5,FAM98C,NEK11,IP6K2,PPOX,BBOF1,ARIH2,SPICE1,WDR53,PPWD1,IFTAP,MLLT6,RBM27,PIBF1,AHI1,ZNF70,CLASP1,FASTKD1,INO80D,PIGH,C9orf78,TMEM18,BIVM,TIMM44,C20orf96,DDX55,COG8,MIX23,CAPN10,KRIT1,AP1G2,DMAC2,DNAJB4,GLMN,BANP,ACYP2,PARP11,GCFC2,THOC1,WDR59,CCDC59,C8orf58,TRNT1,NUTF2,PHF12,ACBD6,INTS11,LANCL1,ZZZ3,ODR4,ZMYM5,TAMM41,IFT74,SNRNP48,RC3H1,NUDT3,ZNF44,NAP1L2,CDK20,TRIM13,SMG1,TAF7,MTURN,LTO1,PHC1,METAP1D,ANAPC13,BCLAF3,CWC15,PUS7L,NFYC,IFT80,CEP83,GGNBP2,FBXO44,UBN2,EXD3,GLT8D1,LRIG2,PARP2,PATZ1,ABHD18,ZBTB2,PCED1A,CREBRF,IKBKB,TARS3,NBPF11,DYNLT2,CEP70,ACIN1,ZC3H8,METTL16,ENOSF1,MAU2,POLRMT,DZIP3,RAB2B,ANKRD49,PAXBP1,DNAJC19,MBLAC2,PGBD1,GPR27,FNTA,COA1,TADA2A,FNBP4,DENND6B,ZNF28,INPP5E,RSRP1,NEK8,BHLHB9,CHD2,MINDY3,NVL,ATG14,GSTO2,ZSWIM1,FIZ1,MYNN,AK6,SUMO2,LTB4R,LRP3,ZNF720,HEMK1,MIER3,TMEM218,TMEM199,MED29,C18orf32,FRS3,NDUFAF5,GPBP1,C2orf68,MRE11,CNOT7,PSMG2,MFF,NDUFAF7,RBM6,EHMT1,TRMT13,TTBK2,CCDC82,SREK1IP1,RNF115,VPS54,LYRM7,AASDHPPT,ACP1,MYL5,EPM2AIP1,UCKL1,TTC12,GSTA4,SYNGAP1,CHD1,PSME3IP1,WDR27,EME2,SSBP3,KHDC4,DCAF15,CROCC,PDCD2L,RSAD1,EP400P1,USF2,PPP1R26,PNISR,RP9,SFPQ,STON2,USP45,ATP5IF1,ZNF10,CCDC97,FAM126B,ATAT1,LRIF1,MORN2,C11orf1,PREPL,SESN1,ESCO1,ZBTB8OS,RALGAPA1,KLF12,TMEM17,CTBP1,ANGEL2,BICRA,NFKBIB,PKP4,DALRD3,POC5,FAM214A,MYSM1,YTHDF1,AKAP8,CDPF1,TTC23,MSTO1,ODAD4,UIMC1,DPY19L2,SMARCE1,TAF1D,KATNBL1,MKS1,C1orf35,CCDC174,MTIF3,CDK5RAP1,SPIN3,NDUFA7,NME5,IFT88,COX11,SLX4IP,NPRL2,ZCWPW1,SUGT1,AFTPH,CCNL2,TTC30B,DHFR2,DCAKD,EFCAB7,FBXO46,DMPK,CCDC115,CLK3,RNPC3,C14orf28,ANKRD10,INCA1,C15orf40,UBXN7,GABBR1,CNOT4,CHTOP,DOP1A,N6AMT1,KANSL3,DHX57,DDTL,SIKE1,MARCHF8,TYK2,CCNT2,OSBPL7,PTCD3,ORC3,KAT2A,PHLDB3,NFRKB,ZNF91,CHD6,BRWD1,LRRC23,CSTF3,BORCS7,TIGD6,RBM26,PLA2G6,ZBTB3,SPATA6,SAP18,PDCD2,RBM25,CEBPZOS,TBCK,ENDOV,BBS10,ZFP30,MLH3,SP4,SETD6,KANSL1L,POLI,TTC30A,PRPF39,ZNF34,ERMARD,TRIM45,GEMIN6,MIB2,EPC1,ZNF22,PHF1,CETN2,TMEM69,ZNF717,MAP4K5,HDAC10,ATXN3,MAP3K7,FBXL20,CEP44,CENPC,DBT,PROSER3,ANKS3,ARGLU1,NOXA1,YJEFN3,NEPRO,CCNL1,TLK1,RGL3,ANKRD54,ANKRA2,ASB7,C2orf49,POMT2,PLEKHA3,VMAC,SCMH1,TMEM60,CCDC121,KRR1,RBM45,HSPBAP1,YAE1,DYRK4,CENPS,PMS1,NFIB,POLR1C,EGFL8,USP12,NR2C2AP,PSMG4,DDX31,METTL6,TIA1,MED4,HOOK2,ZNF83,MOSMO,RETREG3,TMUB2,KANSL1,ZNF3,FAM161B,RFX3,ZNF8,MOCS2,ABCD4,DPH1,ERCC3,MYL6B,SAYSD1,NEIL1,FAM161A,SZT2,ABHD10,DTX3,ZMYND19,MTG2,RNF215,GIN1,NAT9,LIPT1,NDUFA5,CRAMP1,LUC7L,ZNF43,URGCP,PNN,COA5,LUC7L2,BRD8,ERCC8,ARHGAP5,CENPJ,BBS4,C14orf93,DPH7,XRCC1,TRA2A,MAPKAPK5,POLR3F,KMT2A,REV1,NEURL4,PNPLA7,XPA,NR2C1,APBB3,CRELD1,CYTH2,RUFY2,WBP1,JMY,PARP16,RBM33,RWDD2A,RAD17,ADAL,TRIT1,NOL8,IMMP1L,USP51,AGAP6,WRAP73,GABPB2,DNAAF2,ZNF16,GEMIN8,MPHOSPH10,RBM39,ODF2L,SLC25A27,PGS1,TMEM267,ZCCHC8,C7orf31,PYGO2,TMEM44,ITFG2,ZNF2,RRNAD1,ZXDC,CCDC92,KAT8,INTS3,TRIM39,PIGL,NEK3,KCTD6,KIAA0895L,ARV1,NDUFAF6,ZNF77,SAMD10,OSCP1,GPATCH2,MUTYH,RBM28,DCAF8,SPRYD7,PHYKPL,SF3B1,POFUT2,CACTIN,FRA10AC1,MAP3K4,OGA,ZFP69,NUP42,IFT27,RECQL5,PAN3,LARP7,ZC3HC1,NUMBL,NIPSNAP3B,ASB6,CWC22,AKT2,SWSAP1,TBC1D17,GOLGA1,SUPT7L,QSOX2,NT5C3B,UBE2D4,MED31,RICTOR,CENPT,OSGEPL1,PEX1,S100PBP,METTL25,USP24,URI1,TOGARAM1,FAM76B,POGZ,SIRT2,PANK2,RBM4B,DTWD1,EXOG,MRPS31,ANAPC2,CCDC102A,BEND5,TAF1C,ADNP,WDSUB1,NCOA5,TEFM,FUBP1,PIP4K2B,PRIMPOL,CNKSR1,THAP9,SYNE4,EZH1,MRNIP,THAP6,ELMOD3,DDX17,GGPS1,CSTF1,MIGA1,HAUS5,SENP7,UBTD2,CHFR,MTRF1,ZNF57,RAD52,ARVCF,LIAS,NINL,GNPDA2,FBXL12,CEP290,IFT46,CDAN1,WSB1,UBXN8,C12orf76,POLL,FAM228B,DLG1,USP21,ELK4,KLC1,TIGD1,GPS2,TRIM52,NCBP3,PCBP4,MTFR1L,SPIN2B,CRYZL1,CLASRP,MBD6,CWC25,STK36,TTC32,MTX3,SIPA1L3,ZMAT1,GOLGA8B,TMEM230,SS18,ACP6,STRADA,SMG9,CBR4,ZNF18,DIDO1,GOLGA8A,TEX10,CYP2R1,PAM16,PPHLN1,SETD4,ALG9,CEP41,TPRKB,RBM48,BLMH,AARSD1,GMEB2,NACA,RBM5,BOLA1,NKTR,CEP162,ZFP28,BCDIN3D,ZCCHC7,ZNF17,CRBN,ZNF84,PRPSAP1,MICU2,PARP6,TUBD1,C19orf18,MED10,OBSCN,NMRK1,C17orf80,TFB1M,PCMTD1,PIAS2,LRP5L,TSC1,FBXO42,VPS37A,DXO,USPL1,CCDC112,PRPF4B,CCDC57,RABL2B,TRAPPC2,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DCAF8,ANKRD39,DPH7,C22orf39,C14orf93,CCDC174,MSTO1,DNAAF2,POLRMT,PDCD2L,SOCS5,GTF2H4,KIZ,OSGEPL1,ZMAT1,LYSMD4,BRWD1,WDR60,PGS1,FAM73A,HAUS5,DMPK,ZNF57,ORC2,DGCR8,ZNF3,METTL6,PPIL4,EFHC1,ZNF70,ACP6,KBTBD6,CFAP36,EPC1,STX16,CHST10,KIAA0355,HEMK1,XRCC1,EP400NL,MRPS31,TIA1,RBM5,E4F1,WDR48,NCBP3,SS18,C19orf44,PARP2,DYRK4,KPNA5,SZT2,ZNF14,C9orf114,FAM185A,RGL3,SETD6,UBXN7,ZNF720,MYNN,URGCP,VPS37D,OCIAD1,CWC25,FBXL20,MPLKIP,PRPF3,INTS3,MPV17L,PIK3C3,CEP89,RIF1,ENOSF1,ZC3H6,OSCP1,MED4,INO80D,ARMCX5,CLASRP,PANK2,ZFP82,MAPK8IP3,ZC3H11A,C14orf79,TFB1M,SIN3B,CDKAL1,CCDC66,MZF1,RAD9A,MPHOSPH10,CENPJ,C3orf62,SLC25A14,ZSWIM1,QTRT1,MYL5,TMEM120B,IFT74,FBXO46,KIAA0907,TMEM44,STRADA,ZNF69,TBKBP1,NEK3,MAU2,TLK1,SETD4,CCDC97,ABHD18,ZFP30,ENGASE,CHFR,SIKE1,EZH1,C2orf68,SPICE1,MARCH8,CNOT7,RALGAPA1,WSB1,XPNPEP3,MRPL42,MAGEF1,ANGEL2,DPH1,NELFCD,ATPIF1,VPS8,ABCD4,CYTH2,PARP6,SUGP1,MFSD8,RUFY2,ING5,NR2C2AP,CCNL1,SNRPA,S100PBP,NUPL2,VPS37A,C19orf54,RCAN3,NIT2,AARSD1,SENP5,BRAP,PAN3,RBM6,ERCC3,ZMYND19,ALKBH2,C20orf96,RPL7L1,MDM4,CIRBP,TAZ

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ZNF790-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SLC16A3,PSMD2,GNS,ATP6V0D1,HSPA8,FAH,MYH9,RPS6KA1,TRPV2,TPP1,FTH1,ACO2,METRNL,MVP,C2,PPIF,MAN2B1,RNF19B,CTSB,ANXA2,EIF4G1,TUBA1C,TWF2,DPP3,GLMP,ASL

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000267254	ENST00000587278	exon_skip_111863	chr14:23565815-23565892	-11.34	-0.2520	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_319223	chr19:43526200-43526349	-16.74	-0.1278	ETHE1	ENST00000292147	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_7523	chr1:78660553-78660654	-11.21	-0.1121	IFI44	ENST00000370747	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_8541	chr1:109657589-109657671	-9.48	-0.2155	GSTM4	ENST00000369836	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_16568	chr1:201989382-201989531	-16.61	-0.1195	RNPEP	ENST00000295640	Frame-shift
ENSG00000267254	ENST00000588906	exon_skip_41841	chr10:68756272-68756483	-18.25	-0.2122	CCAR1	ENST00000265872	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_66482	chr11:126274926-126275021	-10.20	-0.1097	FOXRED1	ENST00000263578	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_74009	chr11:64773429-64773505	-10.98	-0.1893	SF1	ENST00000377390	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_114365	chr14:74290026-74290118	-11.08	-0.1304	ABCD4	ENST00000356924	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_287763	chr17:28884224-28884315	-11.25	-0.1654	FLOT2	ENST00000394908	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_300663	chr19:1425877-1425960	-11.51	-0.2677	DAZAP1	ENST00000233078	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_326885	chr2:74490024-74490127	-17.10	-0.1745	TTC31	ENST00000233623	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_377198	chr3:123130479-123130616	-13.37	-0.1005	PDIA5	ENST00000316218	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_380242	chr3:186784961-186785101	-15.26	-0.1165	EIF4A2	ENST00000323963	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_382458	chr3:38131595-38131638	-7.47	-0.1867	ACAA1	ENST00000333167	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_131398	chr15:101286213-101286293	-9.76	-0.1574	SNRPA1	ENST00000254193	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_374581	chr3:50110378-50110463	-13.18	-0.1781	RBM5	ENST00000347869	Frame-shift
ENSG00000267254	ENST00000587278	exon_skip_501752	chr9:136992924-136992974	-8.59	-0.2684	PAXX	ENST00000371620	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000267254	hsa-mir-185	ENST00000587413	chr19:36797665-36797747	174.00	-93.38	80	NA
ENSG00000267254	hsa-mir-185	ENST00000587413	chr19:36797526-36797611	162.00	-92.73	86	NA
ENSG00000267254	hsa-mir-185	ENST00000587413	chr19:36797853-36797937	156.00	-89.61	83	NA
ENSG00000267254	hsa-mir-185	ENST00000589556	chr19:36797665-36797747	174.00	-93.38	80	NA
ENSG00000267254	hsa-mir-185	ENST00000589556	chr19:36797526-36797611	162.00	-92.73	86	NA
ENSG00000267254	hsa-mir-185	ENST00000589556	chr19:36797879-36797971	160.00	-79.89	86	NA
ENSG00000267254	hsa-mir-185	ENST00000588906	chr19:36797665-36797747	174.00	-93.38	80	NA
ENSG00000267254	hsa-mir-185	ENST00000588906	chr19:36797578-36797657	150.00	-90.30	74	NA
ENSG00000267254	hsa-mir-185	ENST00000588906	chr19:36797796-36797893	149.00	-87.72	82	NA
ENSG00000267254	hsa-mir-185	ENST00000588906	chr19:36798046-36798126	141.00	-70.41	75	NA
ENSG00000267254	hsa-mir-185	ENST00000587278	chr19:36801299-36801378	175.00	-83.41	81	NA
ENSG00000267254	hsa-mir-185	ENST00000587278	chr19:36801391-36801464	143.00	-75.10	74	NA
ENSG00000267254	hsa-mir-185	ENST00000587278	chr19:36801481-36801561	141.00	-70.41	75	NA
ENSG00000267254	hsa-mir-584	ENST00000587413	chr19:36797661-36797758	199.00	-110.93	99	NA
ENSG00000267254	hsa-mir-584	ENST00000587413	chr19:36797872-36797967	197.00	-94.92	83	NA
ENSG00000267254	hsa-mir-584	ENST00000587413	chr19:36797795-36797886	167.00	-92.62	98	NA
ENSG00000267254	hsa-mir-584	ENST00000587413	chr19:36797966-36798052	166.00	-82.88	90	NA
ENSG00000267254	hsa-mir-584	ENST00000587413	chr19:36797545-36797639	164.00	-101.48	98	NA
ENSG00000267254	hsa-mir-584	ENST00000589556	chr19:36797661-36797758	199.00	-110.93	99	NA
ENSG00000267254	hsa-mir-584	ENST00000589556	chr19:36797908-36797998	189.00	-76.00	87	NA
ENSG00000267254	hsa-mir-584	ENST00000589556	chr19:36798080-36798173	171.00	-91.57	99	NA
ENSG00000267254	hsa-mir-584	ENST00000589556	chr19:36797545-36797639	164.00	-101.48	98	NA
ENSG00000267254	hsa-mir-584	ENST00000589556	chr19:36797771-36797871	144.00	-89.82	99	NA
ENSG00000267254	hsa-mir-584	ENST00000588906	chr19:36797661-36797758	199.00	-110.93	99	NA
ENSG00000267254	hsa-mir-584	ENST00000588906	chr19:36798208-36798316	171.00	-85.86	104	NA
ENSG00000267254	hsa-mir-584	ENST00000588906	chr19:36797867-36797973	170.00	-82.85	101	NA
ENSG00000267254	hsa-mir-584	ENST00000588906	chr19:36797564-36797656	151.00	-109.17	92	NA
ENSG00000267254	hsa-mir-584	ENST00000588906	chr19:36798076-36798180	140.00	-91.00	99	NA
ENSG00000267254	hsa-mir-584	ENST00000587278	chr19:36801301-36801408	199.00	-101.19	91	NA
ENSG00000267254	hsa-mir-584	ENST00000587278	chr19:36801219-36801320	185.00	-90.84	94	NA
ENSG00000267254	hsa-mir-584	ENST00000587278	chr19:36801643-36801751	171.00	-85.86	104	NA
ENSG00000267254	hsa-mir-584	ENST00000587278	chr19:36801511-36801615	140.00	-91.00	99	NA
ENSG00000267254	hsa-mir-33b	ENST00000587413	chr19:36797655-36797758	233.00	-119.14	100	NA
ENSG00000267254	hsa-mir-33b	ENST00000587413	chr19:36797519-36797610	195.00	-105.46	88	NA
ENSG00000267254	hsa-mir-33b	ENST00000587413	chr19:36797896-36798007	188.00	-101.83	109	NA
ENSG00000267254	hsa-mir-33b	ENST00000587413	chr19:36797809-36797894	158.00	-96.63	92	NA
ENSG00000267254	hsa-mir-33b	ENST00000589556	chr19:36797655-36797758	233.00	-119.14	100	NA
ENSG00000267254	hsa-mir-33b	ENST00000589556	chr19:36797526-36797610	195.00	-105.01	88	NA
ENSG00000267254	hsa-mir-33b	ENST00000589556	chr19:36797982-36798069	144.00	-82.90	82	NA
ENSG00000267254	hsa-mir-33b	ENST00000589556	chr19:36797847-36797946	142.00	-98.64	100	NA
ENSG00000267254	hsa-mir-33b	ENST00000588906	chr19:36797655-36797758	233.00	-119.14	100	NA
ENSG00000267254	hsa-mir-33b	ENST00000588906	chr19:36797564-36797656	179.00	-110.63	96	NA
ENSG00000267254	hsa-mir-33b	ENST00000588906	chr19:36797809-36797895	160.00	-93.61	93	NA
ENSG00000267254	hsa-mir-33b	ENST00000587278	chr19:36801276-36801380	157.00	-98.85	98	NA

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Variants for ZNF790-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_355620	ENSG00000267254.4	chr19	36802501	+	antisense	ZNF790-AS1	ENST00000588906.4	antisense	ZNF790-AS1-001
LncEditing_355711	ENSG00000267254.4	chr19	36804483	+	antisense	ZNF790-AS1	ENST00000588906.4	antisense	ZNF790-AS1-001
LncEditing_355881	ENSG00000267254.4	chr19	36812511	+	antisense	ZNF790-AS1	ENST00000588906.4	antisense	ZNF790-AS1-001
LncEditing_355883	ENSG00000267254.4	chr19	36812518	+	antisense	ZNF790-AS1	ENST00000588906.4	antisense	ZNF790-AS1-001
LncEditing_355885	ENSG00000267254.4	chr19	36812519	+	antisense	ZNF790-AS1	ENST00000588906.4	antisense	ZNF790-AS1-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000267254	LncEditing_355885	GBM	chr19_36812519_+	3.119562e+00	2.145995e+00	1.852892e+00	3.936590e+00	8.264754e-05	1.166874e-04	UP
ENSG00000267254	LncEditing_355620	OV	chr19_36802501_+	3.209600e+00	1.699421e+00	1.090096e+00	1.060822e+01	2.729020e-26	2.153935e-25	UP
ENSG00000267254	LncEditing_355711	OV	chr19_36804483_+	3.463956e+00	1.861783e+00	1.116401e+00	8.534397e+00	1.408885e-17	4.953997e-17	UP
ENSG00000267254	LncEditing_355881	OV	chr19_36812511_+	3.790548e+00	2.019217e+00	1.100581e+00	6.437655e+00	1.213330e-10	2.194016e-10	UP
ENSG00000267254	LncEditing_355883	OV	chr19_36812518_+	3.234137e+00	2.082434e+00	1.574531e+00	5.749626e+00	8.944118e-09	1.361609e-08	UP
ENSG00000267254	LncEditing_355885	OV	chr19_36812519_+	3.539824e+00	2.026609e+00	1.242838e+00	6.769068e+00	1.296147e-11	2.560272e-11	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000267254	LncEditing_355881	-5.116780e-01	2.785237e-04	8.512626e-04
ENSG00000267254	LncEditing_355885	-5.574748e-01	1.314320e-02	4.077456e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000267254	ENSG00000105443	CYTH2	ACC,CHOL,KIRP,LGG,PRAD,SARC,THCA	CHOL
ENSG00000267254	ENSG00000105771	SMG9	ACC,CHOL,KIRP,LGG,TGCT	CHOL
ENSG00000267254	ENSG00000121289	CEP89	ACC,CHOL,KIRP,LAML,LGG,OV,PAAD,SARC,UCS,UVM	CHOL
ENSG00000267254	ENSG00000142039	CCDC97	ACC,CHOL,LGG,PAAD,SARC,THYM	CHOL
ENSG00000267254	ENSG00000167595	PROSER3	ACC,CHOL,LAML,LGG,LUAD,OV,PAAD,SARC,UCS	CHOL
ENSG00000267254	ENSG00000184162	NR2C2AP	ACC,CHOL,KIRP,LGG,PCPG,PRAD,TGCT	CHOL
ENSG00000267254	ENSG00000204387	SNHG32	ACC,CHOL,LAML,PAAD,SARC,SKCM,THCA,THYM,UCS,UVM	CHOL
ENSG00000267254	ENSG00000240230	COX19	ACC,CHOL,KIRP,LGG,THCA,THYM,UVM	CHOL
ENSG00000267254	ENSG00000132680	KHDC4	BRCA,CHOL,GBM,KICH,KIRP,LAML,LGG,LUAD,PCPG,PRAD,SKCM,UVM	CHOL
ENSG00000267254	ENSG00000137343	ATAT1	BRCA,CHOL,KICH,KIRP,LAML,SARC,SKCM,THCA,UCS,UVM	CHOL
ENSG00000267254	ENSG00000166012	TAF1D	BRCA,CHOL,KIRP,LAML,LUAD,PCPG,PRAD,UCEC,UVM	CHOL
ENSG00000267254	ENSG00000185158	LRRC37B	BRCA,CHOL,GBM,KIRP,LAML,LUAD,PAAD,PCPG,PRAD,SARC,TGCT	CHOL
ENSG00000267254	ENSG00000185917	SETD4	BRCA,CHOL,GBM,KIRP,LAML,LGG,PRAD,SARC,TGCT,THCA,THYM,UCS	CHOL
ENSG00000267254	ENSG00000204681	GABBR1	BRCA,CHOL,KICH,KIRP,PAAD,SARC,SKCM,UCEC	CHOL
ENSG00000267254	ENSG00000007545	CRAMP1	CHOL,KIRP,LAML,SARC,THCA,THYM,UVM	CHOL
ENSG00000267254	ENSG00000009830	POMT2	CHOL,KIRP,PAAD,THCA,THYM	CHOL
ENSG00000267254	ENSG00000046647	GEMIN8	CHOL,KIRP,LAML,MESO,PAAD,THCA	CHOL
ENSG00000267254	ENSG00000046651	OFD1	CHOL,GBM,KIRP,LGG,MESO,PCPG,PRAD,THCA,UVM	CHOL
ENSG00000267254	ENSG00000070718	AP3M2	CHOL,KICH,LAML,THYM,UVM	CHOL
ENSG00000267254	ENSG00000095066	HOOK2	CHOL,KIRP,LGG,PAAD,THCA,UVM	CHOL
ENSG00000267254	ENSG00000104866	PPP1R37	CHOL,LGG,PAAD,TGCT,THCA	CHOL
ENSG00000267254	ENSG00000104936	DMPK	CHOL,KIRP,LGG,THCA,THYM,UCS	CHOL
ENSG00000267254	ENSG00000105738	SIPA1L3	CHOL,LAML,LGG,OV,PAAD,UCS	CHOL
ENSG00000267254	ENSG00000106477	CEP41	CHOL,KIRP,LAML,PAAD,UVM	CHOL
ENSG00000267254	ENSG00000111752	PHC1	CHOL,KICH,KIRP,PAAD,THCA,UCS,UVM	CHOL
ENSG00000267254	ENSG00000114670	NEK11	CHOL,KICH,KIRP,SARC,THCA	CHOL
ENSG00000267254	ENSG00000115526	CHST10	CHOL,KIRP,LGG,PAAD,THYM	CHOL
ENSG00000267254	ENSG00000119640	ACYP1	CHOL,KIRP,LAML,LGG,PAAD,PRAD,THCA,UVM	CHOL
ENSG00000267254	ENSG00000122417	ODF2L	CHOL,KICH,KIRP,LAML,LGG,LUAD	CHOL
ENSG00000267254	ENSG00000125459	MSTO1	CHOL,KICH,KIRP,LAML,LGG	CHOL
ENSG00000267254	ENSG00000128581	IFT22	CHOL,KICH,KIRP,PAAD,THCA,THYM	CHOL
ENSG00000267254	ENSG00000130590	SAMD10	CHOL,KIRP,LGG,PCPG,PRAD	CHOL
ENSG00000267254	ENSG00000134253	TRIM45	CHOL,KICH,KIRP,LGG,LUAD,MESO,THYM,UVM	CHOL
ENSG00000267254	ENSG00000135632	SMYD5	CHOL,LAML,LGG,MESO,THYM	CHOL
ENSG00000267254	ENSG00000135736	CCDC102A	CHOL,KIRP,LAML,SARC,THCA,THYM,UCS	CHOL
ENSG00000267254	ENSG00000136883	KIF12	CHOL,KICH,KIRP,PAAD,THCA	CHOL
ENSG00000267254	ENSG00000138834	MAPK8IP3	CHOL,KIRP,PAAD,PRAD,THCA	CHOL
ENSG00000267254	ENSG00000143258	USP21	CHOL,KICH,KIRP,LGG,PCPG,THCA	CHOL
ENSG00000267254	ENSG00000143748	NVL	CHOL,LAML,LGG,LUAD,SARC,UVM	CHOL
ENSG00000267254	ENSG00000144445	KANSL1L	CHOL,GBM,KICH,KIRP,LAML,LUAD,THYM,UCEC,UVM	CHOL
ENSG00000267254	ENSG00000145014	TMEM44	CHOL,KIRP,LAML,LGG,UVM	CHOL
ENSG00000267254	ENSG00000153790	C7orf31	CHOL,KIRP,SARC,TGCT,THCA,UVM	CHOL
ENSG00000267254	ENSG00000163281	GNPDA2	CHOL,GBM,LAML,PAAD,THCA,UVM	CHOL
ENSG00000267254	ENSG00000163348	PYGO2	CHOL,KICH,KIRP,LGG,PCPG,SARC,TGCT,THCA	CHOL
ENSG00000267254	ENSG00000163482	STK36	CHOL,KICH,KIRP,LGG,PCPG,PRAD,SARC,TGCT,THCA,THYM	CHOL
ENSG00000267254	ENSG00000164221	CCDC112	CHOL,MESO,PAAD,PCPG,TGCT	CHOL
ENSG00000267254	ENSG00000167615	LENG8	CHOL,KIRP,LGG,MESO,PRAD,UVM	CHOL
ENSG00000267254	ENSG00000168096	ANKS3	CHOL,GBM,KIRP,LGG,PCPG,PRAD,THCA,THYM,UCS,UVM	CHOL
ENSG00000267254	ENSG00000173681	BCLAF3	CHOL,KIRP,LUAD,PCPG,THYM	CHOL
ENSG00000267254	ENSG00000174943	KCTD13	CHOL,KIRP,PAAD,PCPG,PRAD,TGCT	CHOL
ENSG00000267254	ENSG00000178093	TSSK6	CHOL,KICH,KIRP,PRAD,THCA	CHOL
ENSG00000267254	ENSG00000196465	MYL6B	CHOL,KICH,PAAD,THCA,UCS	CHOL
ENSG00000267254	ENSG00000197119	SLC25A29	CHOL,KICH,KIRP,PAAD,PRAD,SARC,TGCT,THCA	CHOL
ENSG00000267254	ENSG00000197283	SYNGAP1	CHOL,KIRP,LAML,PAAD,SKCM	CHOL
ENSG00000267254	ENSG00000197774	EME2	CHOL,GBM,KIRP,LGG,PCPG,PRAD	CHOL
ENSG00000267254	ENSG00000204130	RUFY2	CHOL,KIRP,LAML,SARC,THYM	CHOL
ENSG00000267254	ENSG00000205517	RGL3	CHOL,KIRP,PAAD,THCA,THYM,UVM	CHOL
ENSG00000267254	ENSG00000205593	DENND6B	CHOL,KIRP,PAAD,PRAD,THYM	CHOL
ENSG00000267254	ENSG00000221886	ZBED8	CHOL,KICH,KIRP,LAML,PAAD,SKCM,THCA,THYM,UVM	CHOL
ENSG00000267254	ENSG00000230124	ACBD6	CHOL,KICH,LAML,LGG,THCA,UVM	CHOL

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000267254	ENST00000587413	FAH	ENSG00000103876	ENST00000261755	-0.1387	193	-	CHOL
ENSG00000267254	ENST00000587413	FAH	ENSG00000103876	ENST00000561421	-0.1260	8	-	CHOL
ENSG00000267254	ENST00000587413	FAH	ENSG00000103876	ENST00000539156	-0.1369	188	-	CHOL
ENSG00000267254	ENST00000587413	FAH	ENSG00000103876	ENST00000561353	-0.2025	86	-	CHOL
ENSG00000267254	ENST00000587413	PPIF	ENSG00000108179	ENST00000472580	-0.1070	1	-	CHOL
ENSG00000267254	ENST00000587413	PPIF	ENSG00000108179	ENST00000448165	-0.1043	109	-	CHOL
ENSG00000267254	ENST00000587413	ASL	ENSG00000126522	ENST00000304874	-0.1163	103	-	CHOL
ENSG00000267254	ENST00000587413	ASL	ENSG00000126522	ENST00000380839	-0.1415	7	-	CHOL
ENSG00000267254	ENST00000587413	ASL	ENSG00000126522	ENST00000395332	-0.6860	374	-	CHOL
ENSG00000267254	ENST00000587413	ASL	ENSG00000126522	ENST00000395331	-0.8400	321	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000469372	-0.1497	52	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000452323	-0.1479	1	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000484636	-0.1138	59	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000299367	-0.1479	1	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000442278	-0.1479	1	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000418949	-0.2396	294	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000383177	-0.1479	1	-	CHOL
ENSG00000267254	ENST00000587413	C2	ENSG00000166278	ENST00000485690	-0.1161	1	-	CHOL
ENSG00000267254	ENST00000589556	FAH	ENSG00000103876	ENST00000261755	-0.2064	1	-	CHOL
ENSG00000267254	ENST00000589556	FAH	ENSG00000103876	ENST00000561421	-0.2064	1	-	CHOL
ENSG00000267254	ENST00000589556	FAH	ENSG00000103876	ENST00000539156	-0.1279	7	-	CHOL
ENSG00000267254	ENST00000589556	FAH	ENSG00000103876	ENST00000561353	-0.2025	79	-	CHOL
ENSG00000267254	ENST00000589556	PPIF	ENSG00000108179	ENST00000472580	-0.1070	1	-	CHOL
ENSG00000267254	ENST00000589556	ASL	ENSG00000126522	ENST00000380839	-0.1288	1	-	CHOL
ENSG00000267254	ENST00000589556	ASL	ENSG00000126522	ENST00000395332	-0.4227	52	-	CHOL
ENSG00000267254	ENST00000589556	ASL	ENSG00000126522	ENST00000395331	-0.8400	352	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000469372	-0.1497	45	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000452323	-0.1281	1	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000484636	-0.1138	52	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000299367	-0.1281	1	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000442278	-0.1281	1	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000383177	-0.1281	1	-	CHOL
ENSG00000267254	ENST00000589556	C2	ENSG00000166278	ENST00000485690	-0.1104	1	-	CHOL
ENSG00000267254	ENST00000588906	FAH	ENSG00000103876	ENST00000261755	-0.1387	148	-	CHOL
ENSG00000267254	ENST00000588906	FAH	ENSG00000103876	ENST00000561421	-0.1501	1	-	CHOL
ENSG00000267254	ENST00000588906	FAH	ENSG00000103876	ENST00000539156	-0.1369	143	-	CHOL
ENSG00000267254	ENST00000588906	FAH	ENSG00000103876	ENST00000561353	-0.2025	41	-	CHOL
ENSG00000267254	ENST00000588906	PPIF	ENSG00000108179	ENST00000472580	-0.1295	1	-	CHOL
ENSG00000267254	ENST00000588906	PPIF	ENSG00000108179	ENST00000448165	-0.1031	64	-	CHOL
ENSG00000267254	ENST00000588906	ASL	ENSG00000126522	ENST00000380839	-0.1654	1	-	CHOL
ENSG00000267254	ENST00000588906	ASL	ENSG00000126522	ENST00000395332	-1.2150	664	-	CHOL
ENSG00000267254	ENST00000588906	ASL	ENSG00000126522	ENST00000395331	-0.8400	276	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000469372	-0.1497	7	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000452323	-0.1491	1	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000484636	-0.1138	14	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000299367	-0.1491	1	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000442278	-0.1491	1	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000383177	-0.1491	1	-	CHOL
ENSG00000267254	ENST00000588906	C2	ENSG00000166278	ENST00000485690	-0.1467	1	-	CHOL
ENSG00000267254	ENST00000587278	FAH	ENSG00000103876	ENST00000261755	-0.1093	322	-	CHOL
ENSG00000267254	ENST00000587278	FAH	ENSG00000103876	ENST00000561421	-0.1281	325	-	CHOL
ENSG00000267254	ENST00000587278	FAH	ENSG00000103876	ENST00000539156	-0.1281	317	-	CHOL
ENSG00000267254	ENST00000587278	FAH	ENSG00000103876	ENST00000561353	-0.1233	124	-	CHOL
ENSG00000267254	ENST00000587278	ASL	ENSG00000126522	ENST00000380839	-0.1281	52	-	CHOL
ENSG00000267254	ENST00000587278	ASL	ENSG00000126522	ENST00000395332	-1.2150	453	-	CHOL
ENSG00000267254	ENST00000587278	ASL	ENSG00000126522	ENST00000395331	-0.8400	59	-	CHOL

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267254.4	ENST00000587413.4	72	17	235
ENSG00000267254.4	ENST00000589556.1	102	444	136
ENSG00000267254.4	ENST00000588906.4	78	7	243
ENSG00000267254.4	ENST00000587278.1	142	519	91

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential