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lncRNA: ENSG00000267152

Summary for CTD-2528L19.6

Gene summary

Gene information	Ensembl ID	ENSG00000267152
	Gene symbol	CTD-2528L19.6
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2528L19.6

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267152	6.212676e-01	5.262504e-06	CHOL	5.332248e-05
ENSG00000267152	-3.041622e-01	4.968063e-14	UCEC	3.701694e-13

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lncRNA-Protein interaction for CTD-2528L19.6

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CTD-2528L19.6

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,CEBPZ,RBM19,NCOA2,PUM1,XRN1,ZNF16,ILF3,CPEB2,PBX2,RBM39,KLF12,ZBTB4,GLYR1,KLF7,CIRBP,LCORL,RBM7,MZF1,MYSM1,NRF1,RBM23,AKAP8,ZNF2,KAT7,ARID2,ZXDC,SUGP2,DMTF1,VEZF1,RBM27,ZNF70,BAZ2A,ZNF77,ZNF24,DDX52,RORA,RBM28,ZNF74,TBP,GABPA,IKZF5,MEF2C,DDX55,KMT2B,TET3,ZBTB5,ZFP14,ZXDA,RNPC3,ZFP69,BARD1,SAFB2,ATMIN,THOC1,ZNF25,LARP7,TRNT1,PNPT1,CNOT4,SON,CHTOP,DDX59,CWC22,ZBED5,ZZZ3,CENPT,TTC14,ZBED3,RBM4,MEX3C,CREB1,RC3H1,PCBP2,ZNF44,EEA1,ZFP91,SRSF4,ZNF91,RBMX,AGO2,RBM4B,U2AF2,CSTF3,RBMS3,TIGD6,RBM26,ZFP1,ZIK1,RBM14,PURB,ZBTB3,GZF1,ADNP,MYEF2,PPIL4,MBD1,IKZF4,PUS7L,ASH1L,NFYC,CLOCK,DHX34,NFIA,CASC3,FUBP1,ZFP30,SP4,RBM43,CPSF7,KLF11,PRDM4,LIN54,THAP9,THOC2,DDX6,TSN,ZBTB6,ZNF34,ZNF71,THAP6,PATZ1,DDX17,ZBTB2,E2F5,PUS7,RFX7,E2F6,PRR12,AQR,ZNF57,ZNF22,LCOR,ZHX3,FMR1,MECP2,PHF1,FOXJ3,PURA,PHAX,ZNF41,ZC3H8,MEX3B,TTF1,HSF4,RBM41,SART3,THAP1,NOL9,DZIP3,SRBD1,ZFP82,ZFP62,MEX3D,SGSM2,ZNF93,PAIP1,WIZ,ZNF28,ZNF45,CELF1,SCMH1,KRR1,TMF1,ELK4,RBM45,TIGD1,NFXL1,PRDM2,BACH1,DDX51,AGO3,RBM18,UNC50,NFIB,FOXP1,SRSF2,MBD6,DDX31,FIZ1,SALL2,MYNN,TFCP2,ZMAT1,ZNF83,SKIL,QKI,ZFR,NSUN6,ZNF3,RFX3,STAU1,ZFX,ZNF8,NAF1,ZNF18,NKRF,NR2C2,EIF2D,SYNJ1,SIX5,PUS10,GPBP1,C1D,ARNT,KDM2B,RBM6,HMGN3,ZNF14,RFX1,RBM48,LSM11,GMEB2,ZFHX3,DZIP1,PUM2,XPO1,RBM5,ELF2,SMAD4,RBMS1,NFYB,ZNF43,ZFP28,SP3,ZNF17,SRCAP,DOT1L,ZNF84,DDX42,BAZ2B,RXRB,TRA2A,KMT2A,PDCD4,ZNF69,SRSF7,HINFP,NR2C1,TFDP2,ZFP3,TEP1,PCGF6,SFPQ,TET2,TDRKH,RBM33,NOL8,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2528L19.6

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PUF60,RNH1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000267152	ENST00000588040	exon_skip_150854	chr17:32366664-32366757	-8.95	-0.1261	ZNF207	ENST00000321233	In-frame
ENSG00000267152	ENST00000588040	exon_skip_460899	chr6:85538837-85538864	-4.96	-0.1984	SNX14	ENST00000314673	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000267152	ENST00000588040	exon_skip_111863	chr14:23565815-23565892	-9.63	-0.2469	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_382458	chr3:38131595-38131638	-9.66	-0.2415	ACAA1	ENST00000333167	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_370518	chr22:50247691-50247776	-10.44	-0.2221	HDAC10	ENST00000216271	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_4796	chr1:41007448-41007545	-13.26	-0.1658	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_16568	chr1:201989382-201989531	-11.77	-0.1132	RNPEP	ENST00000295640	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_66482	chr11:126274926-126275021	-9.43	-0.1813	FOXRED1	ENST00000263578	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_114365	chr14:74290026-74290118	-12.87	-0.2681	ABCD4	ENST00000356924	Frame-shift
ENSG00000267152	ENST00000588040	exon_skip_300663	chr19:1425877-1425960	-10.08	-0.1504	DAZAP1	ENST00000233078	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for CTD-2528L19.6

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_356915	ENSG00000267152.1	chr19	37729721	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356920	ENSG00000267152.1	chr19	37729761	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356925	ENSG00000267152.1	chr19	37729806	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356926	ENSG00000267152.1	chr19	37729812	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356927	ENSG00000267152.1	chr19	37729815	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356929	ENSG00000267152.1	chr19	37729823	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356935	ENSG00000267152.1	chr19	37729859	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356938	ENSG00000267152.1	chr19	37729881	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356940	ENSG00000267152.1	chr19	37729898	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356941	ENSG00000267152.1	chr19	37729899	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356942	ENSG00000267152.1	chr19	37729905	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356943	ENSG00000267152.1	chr19	37729918	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356962	ENSG00000267152.1	chr19	37730324	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356963	ENSG00000267152.1	chr19	37730325	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356964	ENSG00000267152.1	chr19	37730330	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356969	ENSG00000267152.1	chr19	37730360	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356970	ENSG00000267152.1	chr19	37730365	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356971	ENSG00000267152.1	chr19	37730366	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356972	ENSG00000267152.1	chr19	37730374	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356985	ENSG00000267152.1	chr19	37730421	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356989	ENSG00000267152.1	chr19	37730431	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356993	ENSG00000267152.1	chr19	37730447	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_356994	ENSG00000267152.1	chr19	37730455	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_357002	ENSG00000267152.1	chr19	37730503	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_357004	ENSG00000267152.1	chr19	37730530	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001
LncEditing_357005	ENSG00000267152.1	chr19	37730531	-	lincRNA	CTD-2528L19.6	ENST00000588040.1	lincRNA	CTD-2528L19.6-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000267152	LncEditing_356970	SARC	chr19_37730365_-	2.970034e+00	1.645567e+00	1.173854e+00	7.954443e+00	1.799387e-15	6.542680e-15	UP
ENSG00000267152	LncEditing_356971	SARC	chr19_37730366_-	2.991239e+00	1.690785e+00	1.214993e+00	7.696336e+00	1.400236e-14	4.378704e-14	UP
ENSG00000267152	LncEditing_356994	SARC	chr19_37730455_-	3.151289e+00	1.768522e+00	1.199908e+00	6.313539e+00	2.727260e-10	4.909067e-10	UP
ENSG00000267152	LncEditing_357004	SARC	chr19_37730530_-	3.048025e+00	1.801375e+00	1.317911e+00	5.307956e+00	1.108613e-07	1.591744e-07	UP
ENSG00000267152	LncEditing_356926	KIRC	chr19_37729812_-	2.725381e+00	1.907320e+00	1.942084e+00	6.842421e+00	7.786605e-12	1.241512e-11	UP
ENSG00000267152	LncEditing_356929	KIRC	chr19_37729823_-	2.722807e+00	1.897239e+00	1.918674e+00	7.112517e+00	1.139457e-12	1.928512e-12	UP
ENSG00000267152	LncEditing_356964	KIRC	chr19_37730330_-	2.704823e+00	1.878788e+00	1.902110e+00	7.686812e+00	1.508461e-14	2.801966e-14	UP
ENSG00000267152	LncEditing_356970	KIRC	chr19_37730365_-	2.362658e+00	1.777594e+00	2.436142e+00	7.810558e+00	5.693533e-15	1.076411e-14	UP
ENSG00000267152	LncEditing_356971	KIRC	chr19_37730366_-	2.377850e+00	1.810922e+00	2.544960e+00	7.304891e+00	2.774925e-13	4.817218e-13	UP
ENSG00000267152	LncEditing_356994	KIRC	chr19_37730455_-	2.589856e+00	1.850908e+00	2.063392e+00	8.545348e+00	1.281490e-17	2.682104e-17	UP
ENSG00000267152	LncEditing_357004	KIRC	chr19_37730530_-	2.544231e+00	1.796316e+00	1.991283e+00	7.467215e+00	8.190959e-14	1.455953e-13	UP
ENSG00000267152	LncEditing_357005	KIRC	chr19_37730531_-	2.427050e+00	1.952512e+00	3.186009e+00	3.774493e+00	1.603333e-04	1.813206e-04	UP
ENSG00000267152	LncEditing_356915	GBM	chr19_37729721_-	3.831127e+00	3.014923e+00	2.893120e+00	4.214778e+00	2.500244e-05	3.852757e-05	UP
ENSG00000267152	LncEditing_356920	GBM	chr19_37729761_-	4.242215e+00	3.044800e+00	2.089993e+00	4.576836e+00	4.720613e-06	8.230552e-06	UP
ENSG00000267152	LncEditing_356925	GBM	chr19_37729806_-	3.798910e+00	2.757704e+00	2.163951e+00	5.500773e+00	3.781292e-08	9.441559e-08	UP
ENSG00000267152	LncEditing_356926	GBM	chr19_37729812_-	3.727732e+00	2.481032e+00	1.702541e+00	6.297979e+00	3.015519e-10	1.213709e-09	UP
ENSG00000267152	LncEditing_356927	GBM	chr19_37729815_-	3.842326e+00	3.108926e+00	3.272643e+00	3.758031e+00	1.712560e-04	2.320705e-04	UP
ENSG00000267152	LncEditing_356929	GBM	chr19_37729823_-	3.730902e+00	2.536733e+00	1.796775e+00	6.085115e+00	1.164081e-09	4.076802e-09	UP
ENSG00000267152	LncEditing_356935	GBM	chr19_37729859_-	3.949981e+00	2.541408e+00	1.571789e+00	7.281521e+00	3.300776e-13	3.256665e-12	UP
ENSG00000267152	LncEditing_356938	GBM	chr19_37729881_-	3.933431e+00	2.903895e+00	2.284155e+00	4.937603e+00	7.908864e-07	1.538046e-06	UP
ENSG00000267152	LncEditing_356940	GBM	chr19_37729898_-	3.859385e+00	2.527582e+00	1.637698e+00	6.911681e+00	4.789440e-12	3.050911e-11	UP
ENSG00000267152	LncEditing_356941	GBM	chr19_37729899_-	3.814238e+00	2.837518e+00	2.343208e+00	4.962293e+00	6.966590e-07	1.371283e-06	UP
ENSG00000267152	LncEditing_356942	GBM	chr19_37729905_-	3.763181e+00	2.863187e+00	2.535942e+00	4.938548e+00	7.870648e-07	1.538008e-06	UP
ENSG00000267152	LncEditing_356943	GBM	chr19_37729918_-	4.199958e+00	2.910849e+00	1.890593e+00	5.650983e+00	1.595327e-08	4.190323e-08	UP
ENSG00000267152	LncEditing_356962	GBM	chr19_37730324_-	4.142718e+00	2.786135e+00	1.747296e+00	6.446386e+00	1.145487e-10	5.036407e-10	UP
ENSG00000267152	LncEditing_356963	GBM	chr19_37730325_-	4.541359e+00	3.161020e+00	1.913019e+00	3.297989e+00	9.737978e-04	1.204591e-03	UP
ENSG00000267152	LncEditing_356964	GBM	chr19_37730330_-	4.184991e+00	2.576546e+00	1.429008e+00	8.134417e+00	4.139253e-16	9.050421e-15	UP
ENSG00000267152	LncEditing_356970	GBM	chr19_37730365_-	3.624544e+00	2.548664e+00	1.968277e+00	5.174931e+00	2.279956e-07	4.905544e-07	UP
ENSG00000267152	LncEditing_356971	GBM	chr19_37730366_-	3.639033e+00	2.492663e+00	1.831948e+00	5.541964e+00	2.990973e-08	7.585258e-08	UP
ENSG00000267152	LncEditing_356985	GBM	chr19_37730421_-	3.960354e+00	2.733741e+00	1.870023e+00	5.912885e+00	3.361668e-09	1.030147e-08	UP
ENSG00000267152	LncEditing_356989	GBM	chr19_37730431_-	4.000145e+00	2.727603e+00	1.810221e+00	6.446857e+00	1.141932e-10	5.036407e-10	UP
ENSG00000267152	LncEditing_356993	GBM	chr19_37730447_-	3.814831e+00	3.064587e+00	3.165292e+00	3.835709e+00	1.252025e-04	1.722600e-04	UP
ENSG00000267152	LncEditing_356994	GBM	chr19_37730455_-	3.751423e+00	2.540116e+00	1.777640e+00	6.063478e+00	1.332092e-09	4.547098e-09	UP
ENSG00000267152	LncEditing_356970	BLCA	chr19_37730365_-	2.640601e+00	1.333988e+00	1.015104e+00	7.621026e+00	2.516671e-14	5.901161e-14	UP
ENSG00000267152	LncEditing_356971	BLCA	chr19_37730366_-	2.941943e+00	1.356164e+00	8.950652e-01	6.840152e+00	7.910941e-12	1.494289e-11	UP
ENSG00000267152	LncEditing_356915	LGG	chr19_37729721_-	3.274725e+00	2.820644e+00	4.643616e+00	3.946006e+00	7.946566e-05	8.962102e-05	UP
ENSG00000267152	LncEditing_356926	LGG	chr19_37729812_-	3.862963e+00	2.720735e+00	1.977413e+00	7.287694e+00	3.153045e-13	5.607178e-13	UP
ENSG00000267152	LncEditing_356929	LGG	chr19_37729823_-	3.758848e+00	2.611390e+00	1.903050e+00	9.048891e+00	1.444281e-19	4.213480e-19	UP
ENSG00000267152	LncEditing_356962	LGG	chr19_37730324_-	3.435977e+00	2.796621e+00	3.366598e+00	3.880403e+00	1.042833e-04	1.163097e-04	UP
ENSG00000267152	LncEditing_356964	LGG	chr19_37730330_-	3.284397e+00	2.784713e+00	4.199914e+00	3.134587e+00	1.720960e-03	1.829815e-03	UP
ENSG00000267152	LncEditing_356970	LGG	chr19_37730365_-	3.038233e+00	2.569486e+00	4.136454e+00	3.816862e+00	1.351599e-04	1.498004e-04	UP
ENSG00000267152	LncEditing_356971	LGG	chr19_37730366_-	3.060253e+00	2.597576e+00	4.228602e+00	3.828052e+00	1.291617e-04	1.433776e-04	UP
ENSG00000267152	LncEditing_356994	LGG	chr19_37730455_-	3.210453e+00	2.687844e+00	3.901260e+00	4.616143e+00	3.909382e-06	4.766880e-06	UP
ENSG00000267152	LncEditing_357002	LGG	chr19_37730503_-	3.294595e+00	2.856230e+00	4.854632e+00	2.519149e+00	1.176388e-02	1.210685e-02	UP
ENSG00000267152	LncEditing_357004	LGG	chr19_37730530_-	3.256058e+00	2.865614e+00	5.426464e+00	2.316023e+00	2.055699e-02	2.088235e-02	UP
ENSG00000267152	LncEditing_356970	ACC	chr19_37730365_-	3.154217e+00	1.872964e+00	1.329860e+00	4.622623e+00	3.789179e-06	2.694527e-05	UP
ENSG00000267152	LncEditing_356971	ACC	chr19_37730366_-	2.836763e+00	2.022005e+00	2.047254e+00	3.483439e+00	4.950164e-04	1.013794e-03	UP
ENSG00000267152	LncEditing_356994	ACC	chr19_37730455_-	3.081567e+00	2.083645e+00	1.771307e+00	3.101497e+00	1.925446e-03	2.987359e-03	UP
ENSG00000267152	LncEditing_357004	ACC	chr19_37730530_-	2.980471e+00	2.043078e+00	1.835548e+00	3.226204e+00	1.254440e-03	2.156389e-03	UP
ENSG00000267152	LncEditing_356970	COAD	chr19_37730365_-	1.918980e+00	1.269071e+00	1.676258e+00	6.697817e+00	2.115560e-11	3.576304e-11	UP
ENSG00000267152	LncEditing_356962	KICH	chr19_37730324_-	2.270485e+00	1.566409e+00	1.867278e+00	2.156552e+00	3.104057e-02	3.414852e-02	UP
ENSG00000267152	LncEditing_356964	KICH	chr19_37730330_-	2.121070e+00	1.500247e+00	2.001633e+00	3.060953e+00	2.206336e-03	4.044950e-03	UP
ENSG00000267152	LncEditing_356970	KICH	chr19_37730365_-	1.984357e+00	1.386190e+00	1.932195e+00	3.457560e+00	5.450913e-04	1.231612e-03	UP
ENSG00000267152	LncEditing_356971	KICH	chr19_37730366_-	2.068543e+00	1.425541e+00	1.861832e+00	3.388653e+00	7.023694e-04	1.553388e-03	UP
ENSG00000267152	LncEditing_356994	KICH	chr19_37730455_-	1.915930e+00	1.567231e+00	3.450331e+00	2.010178e+00	4.441233e-02	4.546212e-02	UP
ENSG00000267152	LncEditing_356970	SKCM	chr19_37730365_-	2.084148e+00	8.801630e-01	8.041072e-01	1.053457e+01	5.985849e-26	2.224100e-25	UP
ENSG00000267152	LncEditing_356915	PCPG	chr19_37729721_-	3.855354e+00	2.799099e+00	2.164967e+00	3.890049e+00	1.002240e-04	1.458349e-04	UP
ENSG00000267152	LncEditing_356926	PCPG	chr19_37729812_-	3.932587e+00	2.860998e+00	2.178838e+00	3.893252e+00	9.890920e-05	1.447888e-04	UP
ENSG00000267152	LncEditing_356929	PCPG	chr19_37729823_-	4.155531e+00	2.740241e+00	1.664641e+00	5.216887e+00	1.819548e-07	4.728880e-07	UP
ENSG00000267152	LncEditing_356962	PCPG	chr19_37730324_-	4.128446e+00	2.846126e+00	1.863588e+00	3.894077e+00	9.857343e-05	1.447332e-04	UP
ENSG00000267152	LncEditing_356969	PCPG	chr19_37730360_-	3.790468e+00	2.824450e+00	2.356233e+00	3.829956e+00	1.281661e-04	1.810719e-04	UP
ENSG00000267152	LncEditing_356970	PCPG	chr19_37730365_-	3.433808e+00	2.605729e+00	2.511790e+00	4.486876e+00	7.227523e-06	1.325501e-05	UP
ENSG00000267152	LncEditing_356971	PCPG	chr19_37730366_-	3.458329e+00	2.678054e+00	2.710832e+00	4.106050e+00	4.024819e-05	6.434414e-05	UP
ENSG00000267152	LncEditing_356994	PCPG	chr19_37730455_-	3.613580e+00	2.731157e+00	2.475757e+00	4.152546e+00	3.287972e-05	5.362263e-05	UP
ENSG00000267152	LncEditing_357004	PCPG	chr19_37730530_-	3.645586e+00	2.732850e+00	2.405322e+00	3.937005e+00	8.250481e-05	1.247675e-04	UP
ENSG00000267152	LncEditing_356970	KIRP	chr19_37730365_-	1.944589e+00	1.449901e+00	2.361213e+00	3.826185e+00	1.301446e-04	1.655380e-04	UP
ENSG00000267152	LncEditing_356971	KIRP	chr19_37730366_-	1.960722e+00	1.476765e+00	2.445319e+00	3.591215e+00	3.291400e-04	4.048873e-04	UP
ENSG00000267152	LncEditing_356926	THCA	chr19_37729812_-	2.988136e+00	2.253965e+00	2.458329e+00	5.739067e+00	9.519981e-09	1.629330e-08	UP
ENSG00000267152	LncEditing_356929	THCA	chr19_37729823_-	3.018601e+00	2.195761e+00	2.177894e+00	7.565989e+00	3.849257e-14	8.942570e-14	UP
ENSG00000267152	LncEditing_356962	THCA	chr19_37730324_-	2.663112e+00	2.302360e+00	4.761913e+00	3.172203e+00	1.512872e-03	1.721350e-03	UP
ENSG00000267152	LncEditing_356964	THCA	chr19_37730330_-	2.782258e+00	2.229308e+00	3.128325e+00	5.674934e+00	1.387425e-08	2.348246e-08	UP
ENSG00000267152	LncEditing_356970	THCA	chr19_37730365_-	2.602555e+00	2.050592e+00	2.907923e+00	6.858657e+00	6.951078e-12	1.415703e-11	UP
ENSG00000267152	LncEditing_356971	THCA	chr19_37730366_-	2.528342e+00	2.180097e+00	4.677282e+00	4.474117e+00	7.672764e-06	1.058253e-05	UP
ENSG00000267152	LncEditing_356994	THCA	chr19_37730455_-	2.736539e+00	2.211581e+00	3.254423e+00	5.847512e+00	4.989789e-09	8.811448e-09	UP
ENSG00000267152	LncEditing_357004	THCA	chr19_37730530_-	2.548734e+00	2.266871e+00	5.914420e+00	3.340208e+00	8.371569e-04	9.761506e-04	UP
ENSG00000267152	LncEditing_356964	CHOL	chr19_37730330_-	2.862040e+00	1.735327e+00	1.385357e+00	2.777964e+00	5.470075e-03	1.111660e-02	UP
ENSG00000267152	LncEditing_356970	CHOL	chr19_37730365_-	2.998425e+00	1.702407e+00	1.224546e+00	3.257612e+00	1.123539e-03	4.423936e-03	UP
ENSG00000267152	LncEditing_356971	CHOL	chr19_37730366_-	2.703587e+00	1.833575e+00	1.785028e+00	2.310018e+00	2.088718e-02	2.612193e-02	UP
ENSG00000267152	LncEditing_357004	CHOL	chr19_37730530_-	2.764974e+00	1.758757e+00	1.532075e+00	2.498169e+00	1.248368e-02	1.850522e-02	UP
ENSG00000267152	LncEditing_356929	THYM	chr19_37729823_-	3.452477e+00	2.029984e+00	1.305205e+00	4.387511e+00	1.146550e-05	2.436980e-05	UP
ENSG00000267152	LncEditing_356964	THYM	chr19_37730330_-	3.481985e+00	2.011590e+00	1.263306e+00	4.720565e+00	2.351900e-06	5.847383e-06	UP
ENSG00000267152	LncEditing_356970	THYM	chr19_37730365_-	3.260939e+00	1.753153e+00	1.116900e+00	6.670202e+00	2.554509e-11	3.376937e-10	UP
ENSG00000267152	LncEditing_356971	THYM	chr19_37730366_-	3.221127e+00	1.821027e+00	1.215342e+00	5.977551e+00	2.265173e-09	1.481796e-08	UP
ENSG00000267152	LncEditing_356972	THYM	chr19_37730374_-	3.339499e+00	2.058596e+00	1.432724e+00	4.099187e+00	4.146041e-05	7.775620e-05	UP
ENSG00000267152	LncEditing_356994	THYM	chr19_37730455_-	3.455707e+00	1.894406e+00	1.153090e+00	6.000132e+00	1.971577e-09	1.335743e-08	UP
ENSG00000267152	LncEditing_357002	THYM	chr19_37730503_-	3.733136e+00	2.006111e+00	1.116088e+00	5.146665e+00	2.651579e-07	8.871331e-07	UP
ENSG00000267152	LncEditing_357004	THYM	chr19_37730530_-	3.410019e+00	1.951991e+00	1.242493e+00	5.235007e+00	1.649788e-07	5.806396e-07	UP
ENSG00000267152	LncEditing_356915	OV	chr19_37729721_-	3.662982e+00	2.472586e+00	1.763676e+00	4.845969e+00	1.259949e-06	1.634024e-06	UP
ENSG00000267152	LncEditing_356925	OV	chr19_37729806_-	4.185904e+00	2.373755e+00	1.221944e+00	7.153335e+00	8.469475e-13	1.903173e-12	UP
ENSG00000267152	LncEditing_356926	OV	chr19_37729812_-	4.006685e+00	2.351294e+00	1.300468e+00	7.739944e+00	9.946056e-15	2.701742e-14	UP
ENSG00000267152	LncEditing_356929	OV	chr19_37729823_-	3.934149e+00	2.373771e+00	1.371985e+00	6.837913e+00	8.035515e-12	1.622098e-11	UP
ENSG00000267152	LncEditing_356935	OV	chr19_37729859_-	4.664376e+00	2.387936e+00	1.035283e+00	6.765742e+00	1.326277e-11	2.614173e-11	UP
ENSG00000267152	LncEditing_356962	OV	chr19_37730324_-	4.176011e+00	2.298454e+00	1.160818e+00	7.490054e+00	6.884554e-14	1.713220e-13	UP
ENSG00000267152	LncEditing_356964	OV	chr19_37730330_-	3.816133e+00	2.230544e+00	1.290796e+00	6.960125e+00	3.399720e-12	7.169823e-12	UP
ENSG00000267152	LncEditing_356970	OV	chr19_37730365_-	3.595734e+00	2.114569e+00	1.305615e+00	8.118230e+00	4.730332e-16	1.426079e-15	UP
ENSG00000267152	LncEditing_356971	OV	chr19_37730366_-	3.757189e+00	2.121393e+00	1.212648e+00	8.137951e+00	4.020229e-16	1.220000e-15	UP
ENSG00000267152	LncEditing_356972	OV	chr19_37730374_-	5.080230e+00	2.377873e+00	9.130566e-01	6.622052e+00	3.542474e-11	6.723023e-11	UP
ENSG00000267152	LncEditing_356985	OV	chr19_37730421_-	4.101159e+00	2.411767e+00	1.305583e+00	6.736951e+00	1.617450e-11	3.171099e-11	UP
ENSG00000267152	LncEditing_356989	OV	chr19_37730431_-	4.254229e+00	2.378160e+00	1.191821e+00	7.851565e+00	4.108782e-15	1.162469e-14	UP
ENSG00000267152	LncEditing_356993	OV	chr19_37730447_-	4.783858e+00	2.441730e+00	1.030640e+00	5.827251e+00	5.634782e-09	8.678698e-09	UP
ENSG00000267152	LncEditing_356994	OV	chr19_37730455_-	4.096888e+00	2.294242e+00	1.195441e+00	7.946347e+00	1.920921e-15	5.519648e-15	UP
ENSG00000267152	LncEditing_357002	OV	chr19_37730503_-	3.979416e+00	2.489697e+00	1.478008e+00	5.258403e+00	1.453122e-07	1.998722e-07	UP
ENSG00000267152	LncEditing_357004	OV	chr19_37730530_-	3.734214e+00	2.338727e+00	1.481303e+00	6.695497e+00	2.149406e-11	4.165181e-11	UP
ENSG00000267152	LncEditing_357005	OV	chr19_37730531_-	4.423201e+00	2.359844e+00	1.103267e+00	5.951846e+00	2.651352e-09	4.206934e-09	UP
ENSG00000267152	LncEditing_356929	TGCT	chr19_37729823_-	2.440490e+00	1.625281e+00	1.705084e+00	3.525767e+00	4.222580e-04	5.396986e-04	UP
ENSG00000267152	LncEditing_356970	TGCT	chr19_37730365_-	2.258499e+00	1.554809e+00	1.856574e+00	4.562896e+00	5.045287e-06	7.998148e-06	UP
ENSG00000267152	LncEditing_356971	TGCT	chr19_37730366_-	2.254767e+00	1.588320e+00	1.978330e+00	3.838955e+00	1.235591e-04	1.701538e-04	UP
ENSG00000267152	LncEditing_356994	TGCT	chr19_37730455_-	2.280883e+00	1.598718e+00	1.950545e+00	4.391225e+00	1.127136e-05	1.720144e-05	UP
ENSG00000267152	LncEditing_357004	TGCT	chr19_37730530_-	2.261880e+00	1.607133e+00	2.028262e+00	3.761470e+00	1.689179e-04	2.265162e-04	UP
ENSG00000267152	LncEditing_357005	TGCT	chr19_37730531_-	2.253783e+00	1.636386e+00	2.165274e+00	3.449370e+00	5.618969e-04	7.006580e-04	UP
ENSG00000267152	LncEditing_356970	LUAD	chr19_37730365_-	2.593496e+00	1.828946e+00	1.984577e+00	7.789876e+00	6.707525e-15	1.285114e-14	UP
ENSG00000267152	LncEditing_356971	LUAD	chr19_37730366_-	2.794910e+00	1.814120e+00	1.603768e+00	8.214387e+00	2.132506e-16	4.439303e-16	UP
ENSG00000267152	LncEditing_356994	LUAD	chr19_37730455_-	2.762282e+00	1.932762e+00	1.941008e+00	5.381443e+00	7.389125e-08	9.382672e-08	UP
ENSG00000267152	LncEditing_357004	LUAD	chr19_37730530_-	2.825285e+00	1.888633e+00	1.721010e+00	6.121118e+00	9.292115e-10	1.285459e-09	UP
ENSG00000267152	LncEditing_356915	STAD	chr19_37729721_-	2.788524e+00	1.954396e+00	1.950159e+00	5.325854e+00	1.004798e-07	1.333522e-07	UP
ENSG00000267152	LncEditing_356962	STAD	chr19_37730324_-	2.932111e+00	1.711312e+00	1.287272e+00	8.160959e+00	3.323742e-16	9.083204e-16	UP
ENSG00000267152	LncEditing_356964	STAD	chr19_37730330_-	2.818087e+00	1.538267e+00	1.144938e+00	9.415211e+00	4.721348e-21	2.440783e-20	UP
ENSG00000267152	LncEditing_356970	STAD	chr19_37730365_-	2.660126e+00	1.520798e+00	1.239670e+00	9.764225e+00	1.603327e-22	9.939241e-22	UP
ENSG00000267152	LncEditing_356971	STAD	chr19_37730366_-	2.691438e+00	1.534173e+00	1.233173e+00	1.008667e+01	6.328009e-24	5.006469e-23	UP
ENSG00000267152	LncEditing_356972	STAD	chr19_37730374_-	2.933214e+00	1.870502e+00	1.540697e+00	5.853886e+00	4.802183e-09	7.002775e-09	UP
ENSG00000267152	LncEditing_356985	STAD	chr19_37730421_-	2.967332e+00	1.776659e+00	1.351352e+00	7.806537e+00	5.878073e-15	1.424264e-14	UP
ENSG00000267152	LncEditing_356989	STAD	chr19_37730431_-	3.066255e+00	1.701194e+00	1.176568e+00	8.455103e+00	2.788417e-17	8.756608e-17	UP
ENSG00000267152	LncEditing_356993	STAD	chr19_37730447_-	3.251690e+00	1.780521e+00	1.150893e+00	8.007600e+00	1.169687e-15	3.096103e-15	UP
ENSG00000267152	LncEditing_356994	STAD	chr19_37730455_-	2.891694e+00	1.649031e+00	1.234117e+00	9.122779e+00	7.322233e-20	3.177405e-19	UP
ENSG00000267152	LncEditing_357002	STAD	chr19_37730503_-	2.748275e+00	1.887234e+00	1.844157e+00	5.899055e+00	3.655885e-09	5.374977e-09	UP
ENSG00000267152	LncEditing_357004	STAD	chr19_37730530_-	2.787560e+00	1.730471e+00	1.453831e+00	8.288255e+00	1.149215e-16	3.331328e-16	UP
ENSG00000267152	LncEditing_357005	STAD	chr19_37730531_-	2.920677e+00	1.926749e+00	1.666294e+00	5.296594e+00	1.179825e-07	1.558588e-07	UP
ENSG00000267152	LncEditing_356970	CESC	chr19_37730365_-	2.316095e+00	1.093361e+00	9.234254e-01	6.689819e+00	2.234473e-11	5.604499e-11	UP
ENSG00000267152	LncEditing_356971	CESC	chr19_37730366_-	2.282215e+00	1.123625e+00	9.782113e-01	6.285715e+00	3.263477e-10	7.236406e-10	UP
ENSG00000267152	LncEditing_356964	PRAD	chr19_37730330_-	2.329152e+00	2.069230e+00	5.857856e+00	2.139974e+00	3.235685e-02	3.329612e-02	UP
ENSG00000267152	LncEditing_356970	PRAD	chr19_37730365_-	2.345423e+00	1.964121e+00	3.906793e+00	4.747728e+00	2.057145e-06	2.847243e-06	UP
ENSG00000267152	LncEditing_356971	PRAD	chr19_37730366_-	2.294460e+00	2.017502e+00	5.388385e+00	2.911877e+00	3.592643e-03	4.021310e-03	UP
ENSG00000267152	LncEditing_356994	PRAD	chr19_37730455_-	2.341070e+00	2.032655e+00	4.906719e+00	3.263149e+00	1.101816e-03	1.266874e-03	UP
ENSG00000267152	LncEditing_357004	PRAD	chr19_37730530_-	2.311332e+00	2.048359e+00	5.738699e+00	2.804344e+00	5.041905e-03	5.559264e-03	UP
ENSG00000267152	LncEditing_356926	BRCA	chr19_37729812_-	2.769066e+00	1.563028e+00	1.212039e+00	1.078179e+01	4.196276e-27	7.061788e-27	UP
ENSG00000267152	LncEditing_356964	BRCA	chr19_37730330_-	2.608354e+00	1.560314e+00	1.348976e+00	1.028137e+01	8.550214e-25	1.339656e-24	UP
ENSG00000267152	LncEditing_356970	BRCA	chr19_37730365_-	2.136761e+00	1.424173e+00	1.708521e+00	1.386236e+01	1.070905e-43	3.384990e-43	UP
ENSG00000267152	LncEditing_356971	BRCA	chr19_37730366_-	2.110194e+00	1.469638e+00	1.916023e+00	1.265835e+01	1.005940e-36	2.413592e-36	UP
ENSG00000267152	LncEditing_356994	BRCA	chr19_37730455_-	2.431267e+00	1.497452e+00	1.430208e+00	1.323118e+01	5.796641e-40	1.549323e-39	UP
ENSG00000267152	LncEditing_357004	BRCA	chr19_37730530_-	2.065278e+00	1.551519e+00	2.423334e+00	9.384778e+00	6.304893e-21	8.952455e-21	UP
ENSG00000267152	LncEditing_356970	PAAD	chr19_37730365_-	1.988151e+00	1.361038e+00	1.829090e+00	3.097924e+00	1.948817e-03	2.297552e-03	UP
ENSG00000267152	LncEditing_356971	PAAD	chr19_37730366_-	2.125989e+00	1.359918e+00	1.551314e+00	3.628589e+00	2.849750e-04	3.860952e-04	UP
ENSG00000267152	LncEditing_356962	ESCA	chr19_37730324_-	2.595096e+00	1.515844e+00	1.289214e+00	4.193812e+00	2.743056e-05	3.657408e-05	UP
ENSG00000267152	LncEditing_356964	ESCA	chr19_37730330_-	2.427129e+00	1.380897e+00	1.229037e+00	5.308199e+00	1.107139e-07	2.037370e-07	UP
ENSG00000267152	LncEditing_356970	ESCA	chr19_37730365_-	2.359069e+00	1.058693e+00	8.651014e-01	6.960646e+00	3.387158e-12	1.504128e-11	UP
ENSG00000267152	LncEditing_356971	ESCA	chr19_37730366_-	2.431611e+00	1.115177e+00	8.891739e-01	6.808004e+00	9.896214e-12	3.973652e-11	UP
ENSG00000267152	LncEditing_356972	ESCA	chr19_37730374_-	2.181974e+00	1.662424e+00	2.548778e+00	2.420103e+00	1.551613e-02	1.613185e-02	UP
ENSG00000267152	LncEditing_356985	ESCA	chr19_37730421_-	2.588701e+00	1.435913e+00	1.176112e+00	5.497716e+00	3.847410e-08	7.636526e-08	UP
ENSG00000267152	LncEditing_356989	ESCA	chr19_37730431_-	2.600297e+00	1.379876e+00	1.093927e+00	6.700187e+00	2.081534e-11	7.790883e-11	UP
ENSG00000267152	LncEditing_356993	ESCA	chr19_37730447_-	2.973836e+00	1.546348e+00	1.059928e+00	4.532392e+00	5.831949e-06	8.447661e-06	UP
ENSG00000267152	LncEditing_356994	ESCA	chr19_37730455_-	2.636863e+00	1.292646e+00	9.722939e-01	6.987159e+00	2.805084e-12	1.269861e-11	UP
ENSG00000267152	LncEditing_357002	ESCA	chr19_37730503_-	2.738643e+00	1.593503e+00	1.279985e+00	4.463672e+00	8.056700e-06	1.148765e-05	UP
ENSG00000267152	LncEditing_357004	ESCA	chr19_37730530_-	2.712442e+00	1.253797e+00	8.982396e-01	7.581359e+00	3.419533e-14	2.185165e-13	UP
ENSG00000267152	LncEditing_357005	ESCA	chr19_37730531_-	2.691002e+00	1.585192e+00	1.309783e+00	4.563804e+00	5.023491e-06	7.352819e-06	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000267152	LncEditing_356915	-4.488797e-01	2.242936e-04	7.374500e-04
ENSG00000267152	LncEditing_356962	-3.263237e-01	4.273407e-03	6.286978e-03
ENSG00000267152	LncEditing_356993	-3.625404e-01	2.744095e-02	2.835564e-02
ENSG00000267152	LncEditing_357002	-3.907713e-01	7.251049e-03	9.254303e-03
ENSG00000267152	LncEditing_356962	-3.190519e-01	1.018019e-02	1.091484e-02
ENSG00000267152	LncEditing_356970	-4.907067e-01	6.877452e-03	2.177308e-02
ENSG00000267152	LncEditing_357004	-4.438798e-01	3.385923e-02	3.824102e-02
ENSG00000267152	LncEditing_357005	-5.776413e-01	1.516773e-02	2.510520e-02
ENSG00000267152	LncEditing_356993	-5.016477e-01	1.473483e-02	2.429925e-02
ENSG00000267152	LncEditing_357002	-4.838529e-01	2.251254e-02	3.183260e-02
ENSG00000267152	LncEditing_356915	-3.767962e-01	4.963957e-05	9.927915e-05

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267152.1	ENST00000588040.1	76	155	382

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential