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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000267121

Summary for FMNL1-DT

check button Gene summary

Gene informationEnsembl ID

ENSG00000267121

Gene symbol

FMNL1-DT

Gene nameFMNL1 divergent transcript
HGNC

55311

Entrez ID

339192

Gene typeantisense
SynonymsFMNL1-DT|CTD-2020K17.1|17q21.31
UniProtAcc

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Structure and expression level for FMNL1-DT

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002671212.374824e+021.243194e+001.777393e-016.994478e+002.660000e-121.510000e-11UPLUAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002671214.057935e-015.681166e-03CHOL7.228231e-03

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lncRNA-Protein interaction for FMNL1-DT

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000267121ENST00000590495CTD-2020K17.1ENSG00000275023MLLT614.9690.4131P55198EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000267121ENST00000590495CTD-2020K17.1ENSG00000004534RBM615.2892.7997P78332RBPNA
ENSG00000267121ENST00000585471CTD-2020K17.1ENSG00000004534RBM666.2190.1477P78332RBPNA

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lncRNA-DNA interaction for FMNL1-DT

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
HCST,AGAP6,ARHGEF1,IFFO1,GSDMB,MYO1G,VAMP1,ISG20,PTK2B,SH2D2A,NCF4,SH3BGRL3,STK17B,MYO1F,OXNAD1,MYO9B,DUSP2,PPP1R18,NAGK,ITGB2,LTB,ABHD17A,GZMH,LENG8,CCR5,IRF3,MAST3,DGKA,EAF2,NICN1,ADPGK,SLA2,RGS10,SNAI3,MAPK8IP3,PLEK,PPP2R3B,HLA-DRB1,PPWD1,MZB1,MKNK1,ANKRD44,PIGL,L3HYPDH,ARHGAP30,MLLT6,FMNL1,SELPLG,CD69,C16orf54,ACAP1,TBC1D10C,LMBR1L,GPSM3,CD52,CRLF3,CD4,CD79A,RASAL3,PHYKPL,IRAK4,TRPV2,CCNL2,COTL1,CAPN10,CD19,PCED1B,LIN37,LST1,ANKRD10,IRF1,TMC8,TNFRSF1B,KCTD13,TNFAIP3,TUBGCP6,CBFA2T3,SPI1,CD27,LPXN,ARHGAP4,AKNA,SELL,LRRC25,SNX20,CLK4,GIMAP7,DENND1C,MSL3,LCK,TNK2,ARHGAP27,ARHGAP9,ZBED5,PHF11,PRKD2,GRK6,PRF1,CD37,CD8A,ADA2,FOXP3,CENPT,CYTH1,RASSF1,TTC14,TYK2,NBEAL2,HCK,CD48,MOB3A,RASGRP2,GDPD3,STAT4,OSBPL7,TAZ,SPG7,KLHL17,SEPTIN1,KAT2A,SLC12A6,CXCR4,CD74,NCKAP1L,ARRDC2,LTO1,LCP2,MLKL,TRAF1,RGS19,CYTIP,SIPA1,FGR,RHOG,OGT,BCL2A1,CCR7,PLA2G6,CD247,RAB4B,TAF1C,KLRB1,VAV1,SIT1,CYBC1,CD7,TRAPPC14,ARHGAP45,P2RY8,CHKB,NUP210,METTL17,JAK3,HVCN1,FLI1,DHX58,MAP4K1,OSGEP,CTC1,CLK1,NFKBID,CXXC1,EZH1,GABPB1,SKAP1,SIRPG,IL12RB1,ERMARD,STK17A,ELMOD3,PCED1A,ABTB1,FERMT3,NECAP2,NCR3,DPEP2,APOL3,CHFR,PIK3IP1,FCHSD1,PDCD1,PHF1,CD84,CIITA,IKBKB,GZMM,GMIP,HAPLN3,HDAC10,CD79B,GMFG,HSH2D,INO80E,GZMK,HCLS1,CD3G,ARGLU1,PIK3R5,ANKRD49,C3orf62,CCNL1,GNAI2,APBA3,SCIMP,IL18BP,SAMSN1,DOCK10,GAB3,BIN2,LAPTM5,ANO9,INPP5E,ITGAL,ORMDL1,CBLN3,ARHGDIB,RSRP1,BTK,SSH2,GPS2,AGER,DENND2D,LAG3,PTPN6,MFNG,NFAM1,CLEC2D,CLASRP,TSC22D4,CDK11A,ZGPAT,TECPR1,AKIRIN2,DOK3,STAC3,PSMB10,APOBEC3H,PTPN22,PPM1M,MICAL1,PGGHG,PBX4,PASK,TIA1,ZNF83,GOLGA8B,FYN,MCUB,PLCG2,FAM78A,NXF1,HLA-DPB1,NLRC3,ABI3,ITGAE,DOCK8,CERKL,PIM2,DGKQ,MPEG1,IL27RA,CDKN2D,RBM6,DRAM2,SZT2,PARP10,GIGYF1,UNC13D,HLA-E,CD72,PARVG,TMEM273,FAM193B,ABCA7,PLCB2,SLC25A28,CXCR3,ARRB2,UBA7,SEC31B,RBM5,APOBEC3D,TMEM259,STK4,CXCR6,FYB1,IL2RB,RASSF5,RAC2,YPEL3,TAGAP,HLA-DPA1,IGFLR1,SIGIRR,LUC7L,CD3D,NLRP1,PLEKHO1,N4BP2L1,DOK2,HLA-DQB2,BTN2A2,IL2RG,CETP,TTLL3,HEXD,TNFRSF14,RUNX3,ETS1,SAMD9L,VCPKMT,CASP8,PARP6,DPH7,PSME3IP1,RCSD1,CCL5,STK10,POU6F1,CARD16,UBXN11,SLAMF6,SH2D3C,POLM,LAIR1,GNGT2,ARHGEF6,FMNL3,DCAF15,GPR132,ERCC5,DENND4B,IKZF3,PNISR,FHOD1,LCP1,PTPN7,USP20,TMC6,EBI3,CARD8,DEF6,TEPSIN,SIGLEC10,GBP5,SIRT7,PLA2G2D
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
TNFRSF1B,DPH7,CD3G,GABPB1,TNFRSF25,RUNX3,MAST3,DGKA,CD74,HLA-DRA,CCDC88B,SLA2,CD19,IL12RB1,RGS10,NBEAL2,SLC12A6,GPS2,CD3E,KAT2A,SLAMF6,FGR,ARRB2,PLA2G2D,LMBR1L,AKIRIN2,TSC22D4,DOCK2,CD8A,RLTPR,CTC1,HSH2D,CCDC109B,STX16,TBC1D10C,IGFLR1,NFKBID,NCR3,HLA-DQA1,HLA-E,METTL17,ZMIZ2,TNFAIP8L2,LIMD2,TIA1,UBA7,RBM5,SRGN,IRF5,CD2,NICN1,TAZ,SZT2,IL3RA,HLA-DQB2,ARHGAP9,ARHGAP25,LSP1,CD79A,ZNF83,DOCK8,TNFAIP3,PDCD1,EVL,C16orf54,RASAL3,STAC3,PIK3IP1,SPI1,KLRB1,APOBEC3H,CELF2,C7orf43,SH2D2A,VPREB3,PARP10,SSH2,PIK3CD,CLASRP,LUC7L,SAMD9L,CD72,MAPK8IP3,DPEP2,SNX20,COTL1,ITGAX,SIN3B,HCST,CERKL,RCSD1,RAD9A,GZMK,C3orf62,VAMP1,LPXN,CXXC1,EBI3,IL10RA,CD3D,INO80E,SRSF5,UBXN11,FYB,CARD16,IKZF3,ENGASE,CHFR,EZH1,PBX4,CCDC130,GPR132,PIK3R5,ARRDC2,LAIR1,TAGAP,CD48,VAV1,CCNL1,P2RY8,RNASE6,CTSW,GZMM,ITGAL,ZDHHC18,LCP2,PTPN22,CD52,TECPR1,GZMA,CLEC4A,RBM6,PLCB2,ARHGAP30,ERMARD,ARGLU1,DCAF15,BTN2A2,FLI1,HLA-DOB
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for FMNL1-DT

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000267121ENST00000590495exon_skip_75398chr11:72692752-72692785-14.69-0.5876ARAP1ENST00000393605In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000267121ENST00000590495exon_skip_482403chr8:27445793-27445919-18.36-0.1583PTK2BENST00000346049,ENST00000397501In-frame
ENSG00000267121ENST00000590495exon_skip_48305chr10:26759061-26759238-22.02-0.1619ABI1ENST00000376142In-frame
ENSG00000267121ENST00000590495exon_skip_64939chr11:112230207-112230230-7.05-0.3711PTSENST00000280362Frame-shift
ENSG00000267121ENST00000590495exon_skip_143275chr16:24939363-24939597-43.23-0.2078ARHGAP17ENST00000289968In-frame
ENSG00000267121ENST00000590495exon_skip_454626chr6:144827347-144827386-7.02-0.2925UTRNENST00000367545In-frame
ENSG00000267121ENST00000590495exon_skip_499791chr9:128627924-128627942-6.35-0.7056SPTAN1ENST00000372731In-frame
ENSG00000267121ENST00000590495exon_skip_53559chr10:101793912-101793998-14.27-0.1903OGAENST00000361464Frame-shift
ENSG00000267121ENST00000590495exon_skip_442657chr5:74730259-74730398-16.56-0.2070GFM2ENST00000296805,ENST00000509430Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for FMNL1-DT

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name
LncEditing_326692ENSG00000267121.4chr1745215505-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326707ENSG00000267121.4chr1745215862-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326712ENSG00000267121.4chr1745217147-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326716ENSG00000267121.4chr1745217238-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326718ENSG00000267121.4chr1745217255-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326719ENSG00000267121.4chr1745217260-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326721ENSG00000267121.4chr1745217282-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326722ENSG00000267121.4chr1745217292-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326726ENSG00000267121.4chr1745217318-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326727ENSG00000267121.4chr1745217321-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326728ENSG00000267121.4chr1745217322-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326729ENSG00000267121.4chr1745217328-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326730ENSG00000267121.4chr1745217347-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326731ENSG00000267121.4chr1745217352-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326733ENSG00000267121.4chr1745217366-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326736ENSG00000267121.4chr1745217405-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326741ENSG00000267121.4chr1745217631-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326755ENSG00000267121.4chr1745217805-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326766ENSG00000267121.4chr1745218004-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326767ENSG00000267121.4chr1745218005-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326769ENSG00000267121.4chr1745218020-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326777ENSG00000267121.4chr1745218075-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326790ENSG00000267121.4chr1745218235-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326814ENSG00000267121.4chr1745218390-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326842ENSG00000267121.4chr1745218486-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326852ENSG00000267121.4chr1745218533-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326860ENSG00000267121.4chr1745218634-antisenseCTD-2020K17.1ENST00000586376.4antisenseCTD-2020K17.1-005
LncEditing_326950ENSG00000267121.4chr1745219915-antisenseCTD-2020K17.1ENST00000591365.1antisenseCTD-2020K17.1-001
LncEditing_326958ENSG00000267121.4chr1745219937-antisenseCTD-2020K17.1ENST00000591365.1antisenseCTD-2020K17.1-001
LncEditing_326962ENSG00000267121.4chr1745219947-antisenseCTD-2020K17.1ENST00000591365.1antisenseCTD-2020K17.1-001
LncEditing_326970ENSG00000267121.4chr1745219959-antisenseCTD-2020K17.1ENST00000591365.1antisenseCTD-2020K17.1-001
LncEditing_326994ENSG00000267121.4chr1745219983-antisenseCTD-2020K17.1ENST00000591365.1antisenseCTD-2020K17.1-001

check buttonEdited-associated DElncRNAs in cancer.
Differentially expressed gene
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange
ENSG00000267121LncEditing_326718DLBCchr17_45217255_-1.130872e+014.881376e+008.250307e-012.014327e+004.397520e-024.507013e-02UP
ENSG00000267121LncEditing_326733DLBCchr17_45217366_-8.471153e+005.139337e+001.387009e+001.977025e+004.803883e-024.846584e-02UP
ENSG00000267121LncEditing_326741DLBCchr17_45217631_-8.285689e+003.843830e+009.024642e-013.222764e+001.269602e-034.117139e-03UP
ENSG00000267121LncEditing_326790DLBCchr17_45218235_-7.786943e+004.870076e+001.476859e+001.994279e+004.612154e-024.673924e-02UP
ENSG00000267121LncEditing_326692LAMLchr17_45215505_-1.461410e+016.316686e+008.263636e-016.458761e+001.055637e-106.328700e-10UP
ENSG00000267121LncEditing_326707LAMLchr17_45215862_-1.140493e+015.821622e+001.030752e+006.167548e+006.935696e-103.318173e-09UP
ENSG00000267121LncEditing_326712LAMLchr17_45217147_-1.251990e+015.937115e+009.290318e-016.842693e+007.771812e-126.273326e-11UP
ENSG00000267121LncEditing_326730LAMLchr17_45217347_-1.305058e+016.458223e+009.853143e-016.146871e+007.902615e-103.682917e-09UP
ENSG00000267121LncEditing_326731LAMLchr17_45217352_-1.333273e+016.077510e+008.822856e-016.909084e+004.877939e-124.242433e-11UP
ENSG00000267121LncEditing_326741LAMLchr17_45217631_-1.141985e+016.244368e+001.148217e+005.208447e+001.904279e-075.090444e-07UP
ENSG00000267121LncEditing_326755LAMLchr17_45217805_-1.313480e+016.906615e+001.078349e+004.246330e+002.173002e-053.844781e-05UP
ENSG00000267121LncEditing_326767LAMLchr17_45218005_-1.225912e+016.101897e+009.935166e-015.883648e+004.013204e-091.593668e-08UP
ENSG00000267121LncEditing_326777LAMLchr17_45218075_-1.045577e+015.889795e+001.207716e+005.385290e+007.232784e-082.126783e-07UP
ENSG00000267121LncEditing_326790LAMLchr17_45218235_-1.362084e+017.219371e+001.091857e+003.098012e+001.948236e-032.408480e-03UP
ENSG00000267121LncEditing_326712THYMchr17_45217147_-1.003011e+016.039295e+001.366334e+003.486385e+004.895954e-047.371130e-04UP
ENSG00000267121LncEditing_326716THYMchr17_45217238_-1.018932e+016.023080e+001.318419e+003.412988e+006.425485e-049.387097e-04UP
ENSG00000267121LncEditing_326718THYMchr17_45217255_-9.838325e+006.023507e+001.412810e+003.662398e+002.498649e-044.018598e-04UP
ENSG00000267121LncEditing_326719THYMchr17_45217260_-9.257578e+005.490059e+001.326589e+004.927116e+008.345208e-072.458208e-06UP
ENSG00000267121LncEditing_326721THYMchr17_45217282_-9.644520e+006.078568e+001.501551e+003.403813e+006.645224e-049.682019e-04UP
ENSG00000267121LncEditing_326722THYMchr17_45217292_-1.060309e+015.980936e+001.210593e+004.266235e+001.987997e-053.961377e-05UP
ENSG00000267121LncEditing_326726THYMchr17_45217318_-1.073875e+015.922524e+001.164765e+004.033051e+005.505738e-051.021955e-04UP
ENSG00000267121LncEditing_326727THYMchr17_45217321_-1.052236e+015.769101e+001.153350e+004.736145e+002.178219e-065.516799e-06UP
ENSG00000267121LncEditing_326728THYMchr17_45217322_-1.005660e+016.036597e+001.358077e+003.752451e+001.751137e-042.876110e-04UP
ENSG00000267121LncEditing_326729THYMchr17_45217328_-9.277884e+006.056251e+001.625036e+003.364903e+007.657071e-041.106702e-03UP
ENSG00000267121LncEditing_326730THYMchr17_45217347_-8.791182e+004.906585e+001.188583e+006.095549e+001.090625e-098.097517e-09UP
ENSG00000267121LncEditing_326731THYMchr17_45217352_-8.475118e+004.082905e+009.490932e-017.038290e+001.946131e-123.637252e-11UP
ENSG00000267121LncEditing_326736THYMchr17_45217405_-9.025629e+006.087188e+001.759784e+002.904891e+003.673816e-034.619972e-03UP
ENSG00000267121LncEditing_326741THYMchr17_45217631_-8.379504e+005.651761e+001.760054e+003.810911e+001.384555e-042.316138e-04UP
ENSG00000267121LncEditing_326755THYMchr17_45217805_-9.106056e+005.415877e+001.333989e+004.956452e+007.179214e-072.126303e-06UP
ENSG00000267121LncEditing_326766THYMchr17_45218004_-8.188554e+006.208528e+002.504022e+002.100363e+003.569688e-023.692311e-02UP
ENSG00000267121LncEditing_326767THYMchr17_45218005_-8.693447e+004.376859e+001.010068e+007.016994e+002.266919e-124.095567e-11UP
ENSG00000267121LncEditing_326769THYMchr17_45218020_-8.968304e+006.094218e+001.794063e+003.092303e+001.986101e-032.612784e-03UP
ENSG00000267121LncEditing_326777THYMchr17_45218075_-8.269020e+004.578382e+001.172500e+006.170645e+006.801181e-105.671138e-09UP
ENSG00000267121LncEditing_326790THYMchr17_45218235_-8.543799e+005.811143e+001.798381e+003.961435e+007.450058e-051.350479e-04UP
ENSG00000267121LncEditing_326814THYMchr17_45218390_-8.775357e+006.040480e+001.855995e+003.357366e+007.868892e-041.134292e-03UP
ENSG00000267121LncEditing_326842THYMchr17_45218486_-8.559908e+006.097851e+002.043759e+002.546038e+001.089534e-021.259121e-02UP
ENSG00000267121LncEditing_326852THYMchr17_45218533_-8.656202e+006.083962e+001.965707e+003.058448e+002.224869e-032.891796e-03UP
ENSG00000267121LncEditing_326860THYMchr17_45218634_-1.130538e+015.807596e+001.040587e+004.634195e+003.583294e-068.593562e-06UP
ENSG00000267121LncEditing_326950THYMchr17_45219915_-9.540869e+005.921565e+001.453188e+003.154833e+001.605898e-032.154448e-03UP
ENSG00000267121LncEditing_326958THYMchr17_45219937_-8.302393e+005.929660e+002.059401e+003.231859e+001.229877e-031.691862e-03UP
ENSG00000267121LncEditing_326962THYMchr17_45219947_-8.337292e+004.750376e+001.232229e+005.601849e+002.120775e-081.017221e-07UP
ENSG00000267121LncEditing_326970THYMchr17_45219959_-9.468783e+006.032839e+001.537652e+002.444879e+001.449009e-021.619411e-02UP
ENSG00000267121LncEditing_326994THYMchr17_45219983_-8.418717e+006.002028e+002.048549e+002.593942e+009.488248e-031.110719e-02UP

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value
ENSG00000267121LncEditing_326736-5.606550e-014.624380e-024.796889e-02
ENSG00000267121LncEditing_326755-3.679869e-013.824953e-024.639433e-02
ENSG00000267121LncEditing_326769-7.642412e-012.351295e-038.862573e-03
ENSG00000267121LncEditing_326852-5.892762e-012.079693e-023.195431e-02
ENSG00000267121LncEditing_326958-6.405080e-017.472570e-044.307717e-03
ENSG00000267121LncEditing_326970-5.623597e-014.544174e-024.788484e-02
ENSG00000267121LncEditing_326994-4.622658e-014.015836e-024.639433e-02
ENSG00000267121LncEditing_326721-9.629947e-013.700526e-024.491217e-02
ENSG00000267121LncEditing_326767-4.352168e-013.537093e-031.142212e-02

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000267121ENSG00000089012SIRPGCESC,CHOL,DLBC,LUAD,MESO,PAAD,TGCT,THYMLUAD
ENSG00000267121ENSG00000105639JAK3CESC,CHOL,DLBC,LAML,LUAD,MESO,PAAD,TGCT,THCA,THYMLUAD
ENSG00000267121ENSG00000138834MAPK8IP3CHOL,DLBC,LUAD,MESO,PAAD,THCA,THYMLUAD
ENSG00000267121ENSG00000140511HAPLN3CHOL,LUAD,MESO,TGCT,THCALUAD
ENSG00000267121ENSG00000167393PPP2R3BCHOL,LAML,LUAD,THCA,THYMLUAD
ENSG00000267121ENSG00000187961KLHL17CHOL,DLBC,LUAD,THCA,THYMLUAD
ENSG00000267121ENSG00000196684HSH2DCHOL,LUAD,MESO,PAAD,TGCT,THCALUAD
ENSG00000267121ENSG00000221978CCNL2CHOL,DLBC,LUAD,TGCT,THCA,THYMLUAD

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000267121.4ENST00000586376.4111509174
ENSG00000267121.4ENST00000585471.114040462
ENSG00000267121.4ENST00000591365.164830636
ENSG00000267121.4ENST00000590522.130817943
ENSG00000267121.4ENST00000590495.111733383