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lncRNA: ENSG00000267040

Summary for RP11-35G9.3

Gene summary

Gene information	Ensembl ID	ENSG00000267040
	Gene symbol	RP11-35G9.3
	Gene name
	HGNC
	Entrez ID	100505549
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-35G9.3

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267040	5.162948e-01	2.829028e-04	CHOL	6.430304e-04
ENSG00000267040	-3.051785e-01	1.152247e-13	THCA	1.159539e-12

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lncRNA-Protein interaction for RP11-35G9.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000032219	ARID4A	96.17	93.274	P29374	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000054267	ARID4B	95.78	94.0277	Q4LE39	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000009954	BAZ1B	94.78	91.3942	Q9UIG0	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000171681	ATF7IP	90.38	93.5906	Q6VMQ6	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000227345	PARG	86.59	92.9601	Q86W56	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000275023	MLLT6	86.15	93.6418	P55198	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000181555	SETD2	86.04	95.3027	Q9BYW2	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000145241	CENPC	85.03	92.1059	Q03188	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000114933	INO80D	82.31	91.6657	Q53TQ3	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000106443	PHF14	76.78	90.2984	O94880	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000055609	KMT2C	76.25	96.3513	Q8NEZ4	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000171988	JMJD1C	69.15	91.0562	Q15652	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000078403	MLLT10	69.1	94.7237	P55197	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000164190	NIPBL	67.91	96.8347	Q6KC79	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000143970	ASXL2	65.85	90.2998	Q76L83	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000204209	DAXX	65.19	90.4555	Q9UER7	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000106462	EZH2	63.59	93.6593	Q15910	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000084093	REST	60.42	90.053	Q13127	TF,Epi	NA
ENSG00000267040	ENST00000619899	RP11-35G9.3	ENSG00000009954	BAZ1B	55.29	92.0403	Q9UIG0	Epi	NA
ENSG00000267040	ENST00000619899	RP11-35G9.3	ENSG00000104517	UBR5	48.28	91.8577	O95071	RBP,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000124151	NCOA3	44.64	91.4476	Q9Y6Q9	TF,Epi	NA
ENSG00000267040	ENST00000619899	RP11-35G9.3	ENSG00000171988	JMJD1C	41.06	90.1239	Q15652	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000120071	KANSL1	38.66	90.2137	Q7Z3B3	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000165632	TAF3	91.44	91.5671	Q5VWG9	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000181090	EHMT1	86.24	93.3563	Q9H9B1	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000196199	MPHOSPH8	83.99	92.7964	Q99549	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000085224	ATRX	81.25	96.4544	P46100	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000067066	SP100	79.86	92.1831	P23497	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000116731	PRDM2	74.67	92.0204	Q13029	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000141027	NCOR1	73.79	95.3899	O75376	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000171634	BPTF	62.24	95.9013	Q12830	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000087206	UIMC1	56.76	90.3941	Q96RL1	Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000079263	SP140	56.56	91.67	Q13342	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000120616	EPC1	48.66	93.2971	Q9H2F5	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000144747	TMF1	96.0	91.542	P82094	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000067066	SP100	79.86	90.9607	P23497	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000181827	RFX7	77.56	91.1954	Q2KHR2	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000116731	PRDM2	74.67	91.8151	Q13029	TF,Epi	NA
ENSG00000267040	ENST00000592201	RP11-35G9.3	ENSG00000117000	RLF	69.73	91.9676	Q13129	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000125482	TTF1	68.12	91.4455	Q15361	TF	NA
ENSG00000267040	ENST00000592201	RP11-35G9.3	ENSG00000126804	ZBTB1	63.67	90.424	Q9Y2K1	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000171634	BPTF	62.24	95.6849	Q12830	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000084093	REST	60.42	91.1077	Q13127	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000167232	ZNF91	58.46	92.7088	Q05481	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000106948	AKNA	58.1	93.4581	Q7Z591	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000079263	SP140	56.56	91.2639	Q13342	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000117000	RLF	54.62	93.6599	Q13129	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000126804	ZBTB1	47.89	91.1332	Q9Y2K1	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000124151	NCOA3	44.64	91.1169	Q9Y6Q9	TF,Epi	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000168795	ZBTB5	35.75	92.0414	O15062	TF	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000256223	ZNF10	13.39	90.5533	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000004534	RBM6	81.4	90.7966	P78332	RBP	High-throughput data combine LncPro prediction
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000198000	NOL8	76.91	92.3885	Q76FK4	RBP	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000137776	SLTM	71.4	93.485	Q9NWH9	RBP	NA
ENSG00000267040	ENST00000591854	RP11-35G9.3	ENSG00000162775	RBM15	64.96	92.4728	Q96T37	RBP	NA
ENSG00000267040	ENST00000619899	RP11-35G9.3	ENSG00000104517	UBR5	48.28	93.1332	O95071	RBP,Epi	NA
ENSG00000267040	ENST00000619899	RP11-35G9.3	ENSG00000091009	RBM27	42.46	92.4021	Q9P2N5	RBP	NA

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lncRNA-DNA interaction for RP11-35G9.3

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,PPA1,KRCC1,MGAT4A,HELQ,XRN1,CEP76,SLC25A32,OXNAD1,TXNL1,AP3B1,ANAPC1,WDR89,CCDC88A,TAP2,N4BP2L2,DCLRE1C,L3HYPDH,DMTF1,ANKRD44,HSPA14,CACYBP,DCK,CD69,UTP18,MAK16,ZNF24,WDCP,SLC25A12,IRAK4,ZFP14,CENATAC,PUM3,WDR5B,MSANTD2,CCDC14,ARAP2,VIRMA,CLK4,POLR2K,GIMAP7,LBR,PARG,UBE2N,ZBED5,SETD2,CD37,RABGGTB,UBA2,TTC14,KLHL42,KNTC1,CREB1,MEX3C,PPIP5K2,DNTTIP2,ATR,GIT2,DAXX,ARHGAP19,SMAD2,SCYL3,DNAJC2,FAM220A,OGT,CCR7,ARIH1,CBX3,PDE7A,ARID4B,CNST,POLG2,TUT4,RBM15,ANAPC10,RPAP3,MBD2,BBIP1,THOC2,CLK1,ZBTB6,ATXN7,GABPB1,OFD1,MCMBP,VPS36,ACYP1,FBXO38,RFX7,TMEM243,VTI1A,PURA,MIS12,MIER1,RSRC2,TTF1,NPAT,FANCF,HERPUD2,RAB3GAP2,NAA25,PRMT9,MIS18BP1,GON4L,SOCS4,DOCK10,C9orf72,BIN2,NARS1,ORMDL1,YTHDC1,C18orf21,PIGN,BRIX1,MBD4,NKAPD1,AGO3,ORC2,UBE2E1,SBNO1,SRSF2,CDK11A,POGLUT1,BTF3L4,TFCP2,LRRC37B,ABHD16A,SUPT20H,CCDC191,USP33,TAOK3,TAF5L,SLU7,NR2C2,PAN2,BUB3,R3HDM1,RIOK1,SMARCAD1,CD72,ZNF14,FAM114A2,BRD2,LSM11,TMCO6,XPO1,STYX,METTL4,GLS,CIR1,GRK3,ZFC3H1,TAGAP,MBTD1,NFYB,DMAC2L,SP3,SEPSECS,ARHGEF7,ANKRD13C,VCPKMT,CEP192,EIF4A1,ABCE1,ATF7IP,PIP4K2A,SHOC2,SLF1,IKZF3,SWT1,CUL3,RNF214,MAPK1IP1L,ATM,TRMO,STK17B,SP140,CDK13,MED7,WBP4,HOOK3,NEMP2,METAP1,WDR53,PPWD1,DBF4,RC3H2,RELCH,HAUS2,RSBN1,MLLT6,RBM27,ATG12,PIBF1,INO80D,SPATA5L1,ICE2,CRLF3,CNOT6L,MOB1B,DDX55,SHQ1,CD19,GLMN,METTL21A,PARP11,GCFC2,THOC1,CCDC59,UBA6,TRNT1,ACAP2,AKNA,WAPL,SHLD2,KIAA1143,EZH2,ODR4,ZMYM5,TAMM41,OSBPL8,CD48,RASGRP2,RC3H1,ZNF44,AP1AR,SLC12A6,TRIM13,FGFR1OP2,LTO1,DNAJB14,PPM1B,ZCCHC9,PUS7L,MED6,CD47,CEP83,DDX20,GGNBP2,DDX6,RTF1,ABHD18,NEMF,RTTN,SMCHD1,CREBRF,AGTPBP1,ZC3H8,MS4A1,THAP1,RAB2B,ANKRD49,GANC,EPS15,MASTL,SGTB,KCTD18,TADA2A,FNBP4,MMS19,GTF2A1,SYNRG,BOD1L1,PHF11,CYB5R4,RSRP1,COP1,PPM1K,TMF1,SSH2,MLLT10,CHD2,ATG14,CLEC2D,PWWP2A,CHRAC1,MYNN,METTL14,VPS4B,OTUD4,ZNF720,LINS1,TMPO,SCAF11,HAUS1,DOCK8,C18orf32,GPBP1,WAC,CNOT7,MRE11,NDUFAF7,RBM6,DRAM2,EHMT1,TRMT13,PDS5B,CCDC82,ARID4A,ATP6V0A2,LYRM7,PAXIP1,TTC37,VCPIP1,NOM1,NSL1,SCAMP1,CHD1,HARS2,KHDC4,GNPTAB,NCK1,TPR,NOC3L,HPS4,SLC25A19,PNISR,GEN1,SFPQ,CEPT1,DNAJC9,CARD8,ATAD2B,ZNF10,SRSF7,FAM126B,ABCB10,ESCO1,CEP63,MTMR10,CEP120,TMX3,ANGEL2,PARP15,NAA15,ROCK1,CSPP1,POC5,INTS12,ADPGK,MYSM1,FAM214A,AKAP8,DARS1,UIMC1,UVRAG,TAF1D,WDR12,KATNBL1,CEP95,NUP153,LYSMD2,DBR1,TASP1,GABPA,SLX4IP,HEATR1,SUV39H2,SUGT1,PPP1R12A,AFTPH,BNIP2,MARCHF7,PRR14L,RNPC3,ANKRD10,RPS6KB1,PPP4R3B,LRCH3,NUSAP1,CNOT4,CCDC77,CHTOP,MSL3,KMT2C,DSCC1,DENND4A,CCDC32,TDP1,CCNT2,COX18,PTCD3,SP100,CENPQ,PHTF2,ZNF91,AGO2,NIN,CSTF3,RBM26,RBM25,C1orf131,FBXW7,RO60,SP4,SPRTN,MRPL50,ARL5A,UBR5,LNPEP,PRPF39,ITSN2,RESF1,ETNK1,HDHD2,HEATR5B,EPC1,ZNF22,LCOR,PABIR2,TMEM69,FBXL20,CEP44,CENPC,OTUD6B,ARGLU1,NEPRO,CCNL1,TLK1,C10orf88,ASB7,C2orf49,TGS1,TCL1A,NCOR1,FCHSD2,CELF1,MEAF6,BTK,RBM45,HSPBAP1,PRDM2,SPATA5,FAM149B1,HLA-DOB,PMS1,ATAD2,BAZ1B,GEMIN2,ABI1,TIA1,MED4,ZNF83,PPP4R3A,MOSMO,KANSL1,NSUN6,UBA3,PTPN2,PIM2,DDX5,USP48,GIN1,ZCCHC10,PARP8,LIPT1,CWF19L2,DYM,STK4,ARFGEF1,ELF2,PTBP3,PNN,CWF19L1,CCAR1,CENPJ,CASP8,TRA2A,MTREX,USP16,MAPKAPK5,TPP2,REV1,BROX,NR2C1,ABHD17B,SOS1,RBM33,RAD17,NOL8,TIMM21,AGAP6,BET1,GABPB2,DNAAF2,MPHOSPH10,MOB1A,RBM39,TADA1,TATDN3,MSL2,TMEM267,ZCCHC8,BLNK,RFX5,WASHC4,GNA13,NSRP1,PIGL,NEK3,AASDH,RABGAP1L,RINL,ATRX,RPRD1A,GPATCH2,RBM28,DCAF8,IKZF5,PHYKPL,SF3B1,ZBTB5,RUFY3,BCLAF1,OGA,ZFP69,NUP42,PAN3,LARP7,SELL,CLASP2,CWC22,DDX59,COPS5,MORC3,ARHGAP9,RICTOR,OSGEPL1,NOLC1,S100PBP,ITM2A,METTL25,CARD11,DPP8,USP24,WDR55,FAM76B,ANAPC7,YAF2,BRWD3,NUDCD1,AKAP10,CYTIP,PUS3,ADNP,WDSUB1,MAP3K12,FBXO33,TEFM,FUBP1,PRIMPOL,HVCN1,C2orf69,TENT4B,TRIM33,HMGB2,WDR20,STK17A,DHX15,DDX17,E2F5,GGPS1,PPP2R3C,INTS13,SENP7,AQR,RSBN1L,DCAF13,MTRF1,DHX33,DYRK1A,ASXL2,CTDSPL2,TAF2,GNPDA2,TRPM7,GTF2E1,SLC25A17,SMC6,TRAPPC8,RAD21,CNBP,FAM216A,ITGAL,ELK4,NMI,GPS2,TRIM52,NCBP3,DFFB,CWC25,TTC32,GOLGA8B,EIF3H,UTP6,HP1BP3,GIMAP6,ABHD3,SS18,NAF1,WASHC5,NKRF,TEX10,CYP2R1,PPHLN1,CNOT2,CHURC1,RBM48,PUM2,RBM5,NKTR,ZCCHC7,ZNF17,TTLL3,CRBN,SLC25A45,ETS1,CCP110,RCSD1,TUBD1,WDR33,SLAMF6,C17orf80,NEDD1,TRA2B,ZDHHC6,FRYL,PIAS2,JMJD1C,NGLY1,SPG11,LRRC40,PDCD7,USPL1,PRPF4B,KBTBD2,SNRPB2,CFAP97,ATF2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DCAF8,SUPT20H,E2F5,CCR7,TRIM33,ARHGAP19,ATF7IP,NSL1,SEH1L,DNAAF2,TASP1,FAM102B,FAM220A,NOC3L,UBA3,ZCCHC10,CD19,WAC,MEAF6,CTR9,OSGEPL1,SETD2,HAUS1,POC5,SMARCA5,ORC2,PPP1CC,CNST,REST,SLC12A6,CCDC18,GPS2,METTL14,NUDCD1,CHRAC1,BNIP2,ABCB10,BPTF,CEP63,EPC1,STX16,TAF3,NCK1,MAK16,NPEPPS,ZFP14,DDX17,FBXO33,C18orf32,TAF1B,TIA1,RBM5,MSL2,WDR48,WDR55,NCBP3,MOB1A,MBNL1,DIEXF,ZNF14,MASTL,ARHGAP9,FUBP1,ZNF720,MYNN,TAF2,ZNF83,CWC25,KIAA1551,ANKRD13C,FBXL20,ATG4C,TATDN3,MAT2B,PIK3C3,RIF1,TIPRL,CELF1,DCLRE1C,NCOR1,MED4,HERC4,DHX33,PIK3CD,MRPL50,PAN2,ZC3H11A,MCMBP,TMCO6,CNBP,CCDC66,DBR1,TRMT10C,RCSD1,MPHOSPH10,CENPJ,DPP8,FAM122B,METTL21A,TRMO,SEPSECS,DKC1,PAPD5,KIAA0907,SRSF5,MLLT10,OTUD6B,EZH2,TRAF5,FYB,DDX46,IKZF3,GIMAP6,NEK3,NARS,TLK1,SGTB,NFX1,MIS18BP1,FAM35A,BDP1,WAPL,GIT2,MRPL42,DHX15,PRMT9,ANGEL2,METTL8,MOB1B,PUS7L,TAF5,ARAP2,CDK13,TAGAP,COMMD3,CD48,UBA2,UBR5,CCNL1,CEP120,MAPK1IP1L,S100PBP,CEPT1,NUPL2,TFCP2,TUBD1,OSBPL8,CFLAR,TERF1,TMX3,SENP5,PAN3,GANC,RBM6,KRCC1,C18orf25,DRAM2,ARL5A,ARGLU1,PDCD7,CCL21,DHX9,FAM175B,ZBTB6,MDM4,ABHD16A,GNA13,COPS5,HLA-DOB

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-35G9.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PEX11G,GIPC1,BCL7C,TSR3,MAPK3,SH3GL1,CHMP1A,MPST,PPP2R1A,CLTB

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-35G9.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000102710	SUPT20H	5	CHOL,DLBC,LUAD,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000197323	TRIM33	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000171681	ATF7IP	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000128694	OSGEPL1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000152359	POC5	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000115942	ORC2	6	CHOL,DLBC,LAML,LUAD,TGCT,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000115942	ORC2	5	CHOL,DLBC,LUAD,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000145388	METTL14	5	DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000140299	BNIP2	5	CHOL,DLBC,LUAD,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000120616	EPC1	5	CHOL,DLBC,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000100201	DDX17	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000168795	ZBTB5	ENSG00000100201	DDX17	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000174579	MSL2	5	CHOL,DLBC,LUAD,TGCT,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000174579	MSL2	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000152601	MBNL1	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000162613	FUBP1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000197302	ZNF720	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000085274	MYNN	5	DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000273559	CWC25	5	CHOL,DLBC,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000174718	RESF1	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000125703	ATG4C	5	DLBC,LAML,LUAD,TGCT,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000125703	ATG4C	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000058673	ZC3H11A	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000180376	CCDC66	5	DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000074603	DPP8	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000132680	KHDC4	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000100650	SRSF5	5	CHOL,DLBC,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000198586	TLK1	5	CHOL,DLBC,LUAD,TGCT,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000198586	TLK1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000086102	NFX1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000129534	MIS18BP1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000109606	DHX15	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000174606	ANGEL2	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000174606	ANGEL2	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000168795	ZBTB5	ENSG00000174606	ANGEL2	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000129317	PUS7L	5	CHOL,DLBC,LUAD,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000163660	CCNL1	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000168795	ZBTB5	ENSG00000163660	CCNL1	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000116497	S100PBP	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000134255	CEPT1	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000108423	TUBD1	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000166479	TMX3	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000152520	PAN3	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000168795	ZBTB5	ENSG00000152520	PAN3	5	CHOL,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000152242	C18orf25	5	CHOL,DLBC,LUAD,TGCT,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000152242	C18orf25	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000134884	ARGLU1	5	CHOL,DLBC,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000186130	ZBTB6	5	CHOL,DLBC,LUAD,SKCM,THYM
ENSG00000267040	ENSG00000084093	REST	ENSG00000198625	MDM4	5	CHOL,DLBC,LAML,LUAD,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000198625	MDM4	6	CHOL,DLBC,LUAD,SKCM,THCA,THYM
ENSG00000267040	ENSG00000126804	ZBTB1	ENSG00000120063	GNA13	5	DLBC,LUAD,SKCM,THCA,THYM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267040.5	ENST00000591854.4	51	312	157
ENSG00000267040.5	ENST00000592201.1	154	12	476
ENSG00000267040.5	ENST00000619899.1	131	437	832

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential