 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | EEF1AKMT3,FKBP8,C6orf89,GIPC1,COPS7B,ABCD1,PUM1,TINF2,DOLK,TOMM20,MYCBP2,USP22,ZSWIM9,ARFIP2,THAP4,PRPSAP2,GPR108,BOD1,GBF1,MCRS1,GLYR1,CILK1,CIRBP,LIG3,NDST1,DAPK3,PHETA2,NEU1,MFAP1,DHX38,SIRT3,SLC50A1,DCP1A,CACFD1,NCAPD2,RHNO1,FKRP,SLC39A1,CCDC47,NUP62,RFC1,ARL2BP,CYB561,TMEM184C,NSD3,CRB3,UNKL,OPA3,MAP4,UTP18,ARHGAP23,APH1A,TRAPPC12,CENPB,LRRC61,NIBAN2,EPB41L1,TRAF7,ZNF622,ZBED4,PFKP,PIGW,RCE1,DAP3,CLUH,GSTCD,LRRC41,HARS1,HS1BP3,PLEKHM1,VMP1,STK16,PEA15,WDR5B,SMUG1,WDR54,MMADHC,KAT6A,SNX12,KDM5B,NOP9,SMARCC2,HIRIP3,ACAD8,SSH3,FAAP20,DPAGT1,EVPL,ARHGDIA,SUMF2,AMN1,COA3,TVP23B,SLC18B1,GNG10,KPNB1,EIF2B5,GMPR2,ATXN7L3,INPP5B,TPRN,SETD2,DOK1,RNF40,XXYLT1,MYBBP1A,INPP5K,CARD10,RAB34,ATP8B1,POGLUT2,RRP36,CDIP1,PPP1R3D,MOB3A,GATD1,GPRASP2,STT3A,ADSS2,ASB13,AFAP1,KDM5A,PCCA,FAM83H,THEM6,CNN2,RNF167,ANKS1A,EOLA2,SNX11,ACTG1,TRIP4,CLCN6,PJA1,CYB5D2,TMEM198,SDF2,POLDIP2,CPSF1,ERAL1,VPS35L,POLD1,CLK2,GZF1,ACP2,RNF187,RGP1,TARBP2,ERI3,EXOC3L1,CISD3,ASH1L,TRIM68,DHX34,CLSTN1,CASC3,GPATCH4,PRCC,RING1,ATG9A,DDB1,ADIPOR1,CEP89,MGRN1,TOP2B,CPSF7,MOCS3,GTF2F1,ZNFX1,NOP14,RIPOR1,DUSP8,PAQR7,DHX58,MORC2,IKBKG,SLC12A9,AGBL5,NCDN,TMEM79,CTNS,LLGL2,GTF3C2,NOC2L,ATP9A,GPR137,TBCCD1,SLC17A5,MAP2K4,MSH6,TBC1D9B,ELMO3,SUN2,DUSP3,SLC4A1AP,MBD5,CBX1,GMIP,B3GALT6,HGS,ANO8,NCOA6,PGAP3,YIPF2,LMAN2L,MFSD3,INO80E,ZNHIT6,FANCF,RAF1,HDAC3,ARID1A,MYO1C,NBR1,ILF2,JPT2,ERMP1,CTDSP2,APBA3,RHPN2,MAP3K14,SETD5,TM9SF1,CEP104,CAPN1,BORCS6,NARS1,TOPBP1,USP5,ACTR1A,PLEKHA6,MCAT,PIGN,DDX51,DDOST,FUZ,VGLL4,MCM3,TSC22D4,TECPR1,PTPN13,RNF121,CAMSAP1,GTF2H1,TSEN54,NAGPA,MLH1,AIDA,PLD2,ZZEF1,DHX35,IPO13,TOE1,ATG4B,INTS2,AARS1,VPS26C,MRPS27,UBE2O,SMC1A,PLCB3,SEZ6L2,NXF1,ZFPL1,MYH10,TSSK6,DBN1,RNF111,ALG8,TNKS,UQCC1,NR2C2,SIX5,LRTOMT,TMEM127,FBXW9,PPP1R9B,HROB,DUS3L,PARP10,PPIL1,KHNYN,PROB1,MAN2B1,TK1,YIPF3,WDR1,MBTPS1,PPT2,LRP10,PLS1,BRD2,AATF,SLC30A6,STK25,ARFGAP2,APEH,BTBD9,PAQR4,IPO9,RABL6,MPG,NIPAL3,TSPAN4,MTMR4,ZDHHC3,FRAT2,KLHL17,ATXN2L,B3GALNT1,FBXO21,SDE2,TUFM,DVL2,GAS8,IDH3B,DDX42,HIPK1,ARHGEF11,SIK3,GALK2,TOR2A,CCDC24,PAFAH1B1,GABARAP,SEC24C,LYSMD1,SEPHS1,ACACA,LAMB2,FDXR,PEX10,RTCB,TRIM27,BUD13,TSR1,GLMP,SF3A1,RAB1B,OTUD5,IGSF8,RALBP1,ZFP3,DNAJA3,NARS2,BRD3,RFFL,CYB561D2,PEX11B,ABHD8,ELAC2,DPP3,JMJD4,TUBG1,FAAP100,GTPBP1,ELOVL1,NOB1,HSPG2,ARHGEF2,SNX33,MBOAT1,USP27X,SNX19,TEDC2,MED16,DENND5A,ILF3,PES1,CIZ1,B4GALT2,TNFAIP1,SMURF2,NOA1,JMJD6,RANBP3,STK11,C1orf159,PRR3,FAM98C,NICN1,CNTNAP1,UBE2G2,AMOTL2,CEP68,RTKN,PPOX,BET1L,FAM168B,ARIH2,WDR81,PLEKHG2,PAPSS1,AZI2,NPRL3,MAZ,TNKS1BP1,MLLT6,NDRG3,CYB561A3,SLC37A4,RTL6,CLASP1,ZNF70,NCSTN,PHF23,SMCR8,MRPL49,RHOA,TMED4,KDM5C,ATP8B2,CNPPD1,C20orf96,INTS5,EFTUD2,IMMT,COG8,SMG5,ARFGAP1,CAPN10,DCAF7,GID8,SMARCB1,BANP,METTL21A,TMEM184B,APBB1,UNC45A,PROSER1,WDR59,CTDSP1,SCO1,OTUD7B,C8orf58,TRNT1,ELP3,MUL1,NUBP2,C11orf68,MTA2,NUMA1,ADD1,MRPL10,PHF12,CHD8,GPN2,EPN2,ACBD6,PIP5K1C,ARHGAP27,ACTR8,PELO,C2CD3,IFT140,UBR4,NDC1,CTDNEP1,HDGF,CSNK1D,GTPBP6,SPACA9,MRM1,PUF60,PCID2,DDX54,AP2B1,BCOR,PGAM5,MAN1B1,UBL7,BAP1,PKD1,WIPI1,PARS2,PIDD1,ZSWIM3,RAI1,NSD1,AP5Z1,MRPS24,MEPCE,TMEM43,NLE1,MFSD9,TCTA,SEC23B,SLC39A7,MTRR,SSRP1,CCDC106,NFYC,SLC25A24,CCDC137,ASCC1,IGSF3,ARNT2,TOLLIP,NUP210,DHRS13,NEK9,ATP11A,CPLANE2,NELFE,PRKAB1,DOCK6,NATD1,RMND5B,ISG20L2,AGPAT1,EXD3,METTL23,NOMO2,RTF1,GSDMD,C17orf75,TNFSF13,TBC1D10B,MAPKAPK2,CDH24,P4HTM,GET4,FBXO3,TMEM109,ABTB1,PRRT3,EVC,TUSC2,OSBP,EPN1,POLR2A,SLX4,C11orf98,SH3GL1,ELP5,SP2,FN3K,SRSF9,MTA3,KLF3,SLC25A22,PEX26,IKBKB,ABCA3,SPRYD3,UBAP2L,RPRD1B,BRF1,UBL4A,DOCK7,ARHGAP17,TNRC18,SART3,RAB17,LAPTM4B,WDR82,FOXM1,UBOX5,CYB561D1,RITA1,LEMD2,SCAMP3,APPL2,MEX3A,TMEM186,CAMK1,ZNF48,MOGS,C6orf120,MRPS23,JADE2,DENND6B,TOR4A,LRRC56,SYNRG,HIP1,RNF20,SCAP,TRADD,KATNB1,RHBDF2,SLC35C2,REXO4,SSH2,NEK8,TBCD,SUFU,DNPEP,BHLHB9,CENPO,MBD3,FLCN,USP40,MED23,MARK4,MGAT4B,SYNGR2,FIZ1,PGAP6,C6orf132,MRPS18B,LRP3,RPE,NIT1,SPTAN1,TRIM8,HEMK1,MFSD12,PRKD1,TMCO3,PFKL,POMGNT2,ILK,CD2BP2,KIAA0319L,ROCK2,TMEM218,BCL9L,PLEKHM2,ALKBH4,ANKEF1,POLR1A,CCDC127,NADK,MYH9,ARHGAP39,SZRD1,C2orf68,FBXL8,ZSWIM8,SLC10A3,SLC41A3,PITPNA,MANSC1,TXNDC5,CASKIN2,TP53BP1,FAM171A1,PRMT1,PIGF,SBF2,CDIPT,FXR2,PPM1G,CCT7,TEAD3,CRMP1,LRBA,OSBPL5,AP3D1,AASDHPPT,TRAP1,UBXN6,KIF18B,FRMD8,CUEDC2,WASF2,MGAT2,GGT7,TGOLN2,ST3GAL2,CIAPIN1,PYCR1,TOMM40L,SYNGAP1,MLLT1,ANKMY2,ZHX2,TCF25,SRR,MAML1,RBM8A,FAM104A,CSTF2,MPPE1,HECTD4,HSPBP1,VAT1,TMEM104,CCDC71,NAIF1,DDX41,EXOC7,ANKFY1,DTNBP1,BCAR3,FARS2,ITGA3,CROCC,PLXNB1,R3HDM4,DISP1,DHRS11,TTLL12,PPP1R26,ATPAF2,AKR7A2,B3GNT9,CORO1B,TMEM63A,ACAP3,SNRNP40,CCDC51,UNC119B,PANK4,TAF6,EMC10,TMEM187,MTCH1,ZDHHC1,VPS72,SINHCAF,LRRC14,FBXO9,DET1,CLCN7,CCDC97,ATAT1,ESYT1,PRKCZ,INVS,PREPL,EXO5,PLCG1,PBX2,MYO9B,FGD6,PPP2R5D,ZBTB4,CTBP1,TGFBRAP1,PKP4,NIPSNAP1,B4GALT3,ZNF598,STARD3,DALRD3,MED13L,RBM23,VPS51,FANCG,CEP250,FBXO41,SMARCAL1,UBTF,SMG6,MSTO1,VPS13B,POMGNT1,TJAP1,NEK4,MKS1,TAF4,C1orf35,C9orf64,NME2,NUP153,TTI1,DBR1,MCM2,HELZ2,LYPLA2,TMEM150A,TASP1,MTX1,ATF6B,STARD7,TBP,IRF2BPL,EML3,EIPR1,PBRM1,SNX17,RUNDC1,TET3,TTC30B,TTYH2,DCAKD,XPC,ZC4H2,PDPK1,EXOC3,CLK3,TOM1L2,INCA1,HDAC11,USP10,HS6ST1,UBXN7,ZER1,MTMR12,SON,CHTOP,TFAP4,SPNS2,ZDHHC8,KANSL3,RFNG,DHX57,USP11,SGSM3,SEMA4C,ALG12,MLX,EHBP1L1,TP53I13,RGL1,B4GALT7,TYK2,CCDC32,GMPPB,INTS1,FKBP10,CHST14,STAT3,POM121C,OSBPL7,PTGFRN,UBA1,SCRIB,ZFAND3,PI4KB,EDC4,C1QBP,DHX37,PHLDB3,NDE1,RNF123,NFRKB,UBALD1,FTSJ3,DNM2,NUP160,AGO2,CNOT1,U2AF2,ARL13B,ANKS6,CHD3,DFFA,PDK2,SVIL,NR2F6,ZBTB3,TERF2,PDIA6,C1orf131,CYBC1,DCP1B,TRPC4AP,SLC7A6OS,SLC4A2,AFAP1L2,TBC1D16,BBS10,POLR3H,FAM207A,SLC25A44,RARG,CLSTN3,RBM43,SMARCC1,CHMP1A,UBR5,CDK4,PGAP2,PNPLA6,AP2A1,ARHGEF5,CDC23,CCDC22,TRAPPC9,CDK16,TRAM1L1,ZNF34,HDHD2,KIAA0753,HYOU1,MAD2L1BP,TRIM26,SGSH,NDOR1,SRRM2,CHD4,BTN2A1,VPS53,MIB2,DOK4,TBL2,GOSR2,PARP3,PHF1,HIRA,SPNS1,TMEM128,TMC4,DLG5,HEATR6,CNOT11,DYNLL2,SCRN2,HERC2,ATRAID,WBP11,CBX4,MAPK7,CIAO1,TUBGCP4,TTI2,FBXW11,MFSD11,IRF2,PIGQ,HECTD3,PTPN23,NMT1,USP19,MEX3D,SGSM2,TMEM201,RASSF7,PRRC2A,UBE2G1,PGAP4,POMT2,RAD51C,WIZ,VMAC,TGS1,SMARCD2,RPS6KA4,NCOR1,TUBA1B,SOGA1,DBNL,PPP4R1,NUP88,CCDC121,MADD,ZSWIM4,NFKBIL1,PGAM1,LRPAP1,ACTR1B,PKMYT1,LBHD1,OGG1,QRICH1,B3GALT4,HOMEZ,FAM160A2,APEX1,GEMIN2,AMBRA1,VIPAS39,ADCY6,ZGPAT,METTL6,HDHD5,NUP98,DNAAF5,HOOK2,MAIP1,TMUB2,FCF1,ARFRP1,FAM161B,STAU1,ZMYM3,DNMT3A,SDF4,SUSD1,FTH1,HNF1B,PCGF2,DPH1,SNRNP200,SLC35B2,GPAA1,DMWD,PELP1,PARP1,MEN1,PLPP2,CAD,ERCC3,DGKQ,EXT1,TNK1,RUSF1,DEPDC1B,USP32,SMARCD1,ERBB2,MYO18A,MYG1,VPS33B,G3BP2,PRKDC,GRIPAP1,DTX3,RNF215,MARK2,WWP2,MRPS10,AAMP,NAT9,HELZ,GTF3C1,BRCA1,RFT1,PDE6D,SRRD,NKIRAS2,MRTFA,WDR6,TPGS1,PTPRK,TRMT61A,URGCP,DSE,IRF2BP2,BTBD2,TMCC1,SEMA4G,CHAF1A,C14orf93,UXS1,LRSAM1,XRCC1,CBX8,PMS2,RECQL,TMEM131,RAB35,RIC8A,MRPL43,CEP131,DUS1L,FARSA,BAIAP2,SORT1,NEURL4,FZD6,APEX2,HINFP,PHOSPHO2,SLC19A1,ATP6V0D1,BRD9,IP6K1,MFAP3,CRELD1,GPS1,TLN1,TM7SF3,ADAT1,FBXL14,CNTROB,CYTH2,RAB5B,TBC1D22A,WDR74,SEC14L1,APPL1,MED24,IRF2BP1,WBP1,TLCD1,HCFC1,MED1,TONSL,WDR37,SEC22C,TMEM250,NUP133,PRMT5,COA7,CDC42BPB,GLB1,DSTYK,FN3KRP,TMEM97,EEF2KMT,NELFB,NPLOC4,USP34,TAF6L,AP3M1,NUDT16L1,GTPBP2,MAPKBP1,TICAM1,SLC29A2,CYB5R3,INTS14,KIAA0100,GPATCH8,TRIM25,TMEM115,PGS1,POLR1B,COPS7A,TMEM161A,GPANK1,STAG1,ATN1,MAP3K4,KDF1,FAM120B,C1orf122,COQ8B,RCC1L,RNF4,KAT7,ZXDC,GBA,VAC14,AIMP2,INTS3,EIF6,SLC25A11,IL17RA,PEX6,FZR1,PPP5C,BIN3,PPAT,SLC5A6,DUSP7,ANXA11,YWHAQ,NAGLU,PHLDB1,KIAA0895L,PIP4K2C,USP39,MIF4GD,RILPL1,ADCY9,ZNHIT2,FOXRED2,SAMD10,GEMIN5,YARS2,MUTYH,PIEZO1,ZNF74,MAML2,RPTOR,OBSL1,MFN2,CALHM2,SLC25A1,MFSD10,MRPS18A,BABAM2,ZBTB5,PIK3CB,SNX29,PYCR2,B4GAT1,PTK7,GORASP1,BECN1,AKT1S1,RECQL5,PITPNM1,PIGM,RRP1B,ASB6,PTCD2,AKT2,SENP3,SARM1,ZC3H4,KIF3C,PLIN3,SUPT7L,ERCC2,MYC,FLOT2,HID1,PEX12,NT5C3B,RNH1,DLG4,BCAR1,C1orf216,TIMP2,KEAP1,G6PC3,PACS2,RIN1,CUL7,RBM4,TRIM3,SHC2,CALCOCO1,ANKRD52,VAMP2,APAF1,FBXW8,PANK2,GTPBP3,CHTF8,LMF2,CCDC43,UBE2Q1,PLXNB2,C2CD2L,PSMD3,RBM4B,TECPR2,TSC2,DNAJB2,TMEM99,ANAPC2,TAF1C,RBM14,NOTCH1,TRAF3,CAVIN1,TMEM143,NCOA5,GPKOW,MBD1,DCTN2,SURF6,JARID2,C12orf43,ARID1B,OGFOD3,AAAS,ARSA,PIP4K2B,ARRB1,NF1,ANKRD40,LSM12,GET3,ERC1,GID4,COPA,LAD1,CAPN15,DENND1A,TADA2B,VPS26B,TIRAP,SPHK2,LRP6,FTO,POLR2B,KIDINS220,DHX15,SLC35B1,DCAF1,CYFIP1,FBH1,TTLL1,CSTF1,TRIM62,LMNB2,ING4,BRF2,HSF1,MED15,NAGA,SENP7,SPRING1,STK24,M6PR,NINL,C8orf33,FBXL12,CERS2,TELO2,ACLY,CDAN1,HAUS4,KCTD20,MAPKAP1,CARMIL1,LRFN4,STK19,HTRA2,PFAS,SF3B4,POLL,P4HB,PPP6R1,VPS52,SLC25A23,MED22,NCKIPSD,SLC39A6,USP21,RWDD2B,ZDHHC16,DOCK9,HEXIM1,CDC26,E2F4,NCBP3,PCBP4,PPP1R21,ARHGAP1,PSME3,WDR45B,SPIN2B,C6orf47,NLRX1,MAP7D1,ATP6V1E2,TRAF4,SALL2,ANKRD16,TUBA1C,PATL1,BAHCC1,GANAB,CUL4A,SPATA2L,PRPF19,UMPS,SPATA20,GRB2,COASY,MCM3AP,ELK1,HP1BP3,ZW10,EEF1D,STRADA,LRATD2,RAB3D,VPS35,CSNK2A1,IRAK1,TIMM29,LZTS2,EIF2D,DIDO1,TEX10,BAG6,CYREN,LMBRD2,KCTD11,FLOT1,TGIF1,RNF157,LRRC59,XPNPEP1,C1orf109,RFX1,POLR2E,HTT,TP53BP2,KLHDC3,BLMH,PSMC5,GOLPH3L,PSMC3IP,RAB25,TRIM35,CARM1,PUM2,FTSJ1,VPS11,PLXND1,DNAJC11,AXIN1,TSR3,DNAJC5,DTD1,DHX36,GHDC,IPO5,SAP30BP,CNP,MTF1,FARP2,C19orf71,TRMT61B,SRCAP,SHISA5,RNF169,SF3B2,CEP170,SLC35B3,SAMM50,PIN1,LDB1,RXRB,RHBDD3,ADCY3,TUBD1,GNL1,WDR26,PEX5,AP5B1,PTPRA,NUDT17,BSCL2,CCDC86,IFI35,NACC1,KATNIP,ASXL1,TMEM185A,KIF13A,MAP4K2,DENND4B,NGRN,FBXO42,NOTCH2,MAPK3,MAN2C1,NCAPD3,SUCLA2,DPP9,TMC6,LZTR1,WHAMM,NELFA,INTS4,RABL2B,PPME1,GAA,PIP5K1A,SIRT7,AAR2,USP13 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLIRP,MRPS15,BLOC1S1,NDUFB1,COX7C,ATP5MF,NDUFA7,ATP5MK,TPT1,NDUFA1,SEM1,RPL36A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000266962 | ENST00000590513 | exon_skip_120741 | chr15:34228428-34228589 | -20.11 | -0.1972 | EMC4 | ENST00000267750 | Frame-shift | | ENSG00000266962 | ENST00000590513 | exon_skip_326741 | chr2:73946718-73946906 | -23.38 | -0.1426 | DGUOK | ENST00000264093 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553420-42553518 | 193.00 | -89.92 | 98 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553161-42553248 | 187.00 | -96.42 | 83 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553086-42553158 | 169.00 | -67.09 | 75 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42552628-42552709 | 167.00 | -81.08 | 78 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42552521-42552604 | 166.00 | -89.53 | 87 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553344-42553426 | 165.00 | -79.89 | 84 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553679-42553783 | 164.00 | -95.10 | 103 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42554039-42554121 | 164.00 | -84.18 | 72 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42554586-42554669 | 164.00 | -72.33 | 84 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42552696-42552782 | 162.00 | -89.54 | 81 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42554210-42554284 | 161.00 | -82.92 | 82 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42554499-42554582 | 161.00 | -86.25 | 87 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42552437-42552488 | 158.00 | -67.44 | 51 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553818-42553895 | 158.00 | -88.84 | 82 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553586-42553680 | 156.00 | -75.08 | 85 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42552880-42552973 | 154.00 | -89.81 | 94 | NA | | ENSG00000266962 | hsa-mir-22 | ENST00000590513 | chr17:42553001-42553088 | 152.00 | -83.54 | 82 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,ANKRD16 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,C1orf35 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,PRR14 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,ILKAP | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,KAT2A | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,H1-10 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,PAGR1 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,ING5 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,MRPL53 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,TSEN54 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,MRPL38 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,C11orf98 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,FBXO46 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,SNRPA | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,SUGP1 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,CDK5RAP3 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,TUBGCP2 | KICH,CHOL,LGG,PAAD,LIHC | | ENSG00000266962 | HSD17B1-AS1,hsa-mir-22,WBP1 | KICH,CHOL,LGG,PAAD,LIHC |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000266962.2 | ENST00000590513.2 | 181 | 50 | 592 |
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