 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | FLII,STIM1,MACF1,PRRC2C,IRAK1,ADCY3,FLNA,NEK7,MYH9,LMNA,PLEKHM1,TMEM127,SLFN5,EPS8,DUSP3,ARHGAP26,LRP10,LRP1,CAST,STAT6,MVP,NCEH1,MKNK2,RNF213,KIAA0100,HEPH,TICAM1,KLHL5,FNDC3B,MMP14,MCFD2,SLC10A3,SLC12A4,PRICKLE3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000266916 | ENST00000587060 | exon_skip_111863 | chr14:23565815-23565892 | -14.15 | -0.2482 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000266916 | ENST00000587060 | exon_skip_23135 | chr1:23796508-23796586 | -12.65 | -0.1860 | GALE | ENST00000374497 | In-frame | | ENSG00000266916 | ENST00000587060 | exon_skip_324294 | chr2:27774423-27774530 | -12.40 | -0.1292 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000266916 | ENST00000587060 | exon_skip_303809 | chr19:18431352-18431418 | -11.66 | -0.2915 | SSBP4 | ENST00000270061 | In-frame | | ENSG00000266916 | ENST00000587060 | exon_skip_16568 | chr1:201989382-201989531 | -14.77 | -0.1172 | RNPEP | ENST00000295640 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000266916 | hsa-mir-511 | ENST00000588845 | chr19:37497434-37497517 | 163.00 | -56.32 | 75 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000588845 | chr19:37497598-37497676 | 163.00 | -53.54 | 84 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000588845 | chr19:37497317-37497397 | 156.00 | -55.60 | 76 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000588845 | chr19:37497520-37497603 | 145.00 | -59.36 | 85 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497295-37497383 | 167.00 | -53.53 | 88 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497480-37497563 | 163.00 | -56.32 | 75 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497644-37497722 | 163.00 | -53.54 | 84 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497376-37497467 | 153.00 | -69.85 | 92 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497566-37497649 | 145.00 | -59.36 | 85 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585890 | chr19:37497165-37497239 | 141.00 | -54.97 | 72 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000589025 | chr19:37497728-37497808 | 156.00 | -55.60 | 76 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000589025 | chr19:37497510-37497591 | 155.00 | -66.21 | 82 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585397 | chr19:37497628-37497708 | 156.00 | -55.60 | 76 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000585397 | chr19:37497410-37497491 | 155.00 | -66.21 | 82 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000587060 | chr19:37506119-37506211 | 159.00 | -68.44 | 82 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000587060 | chr19:37505811-37505892 | 155.00 | -66.21 | 82 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000587060 | chr19:37505943-37506022 | 149.00 | -55.36 | 85 | NA | | ENSG00000266916 | hsa-mir-511 | ENST00000587060 | chr19:37505620-37505709 | 143.00 | -70.01 | 87 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000588845 | chr19:37497160-37497272 | 197.00 | -103.73 | 117 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000588845 | chr19:37497382-37497509 | 187.00 | -87.44 | 122 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000588845 | chr19:37497568-37497661 | 143.00 | -74.93 | 104 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585890 | chr19:37497202-37497323 | 191.00 | -95.03 | 120 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585890 | chr19:37497428-37497555 | 187.00 | -87.44 | 122 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585890 | chr19:37497614-37497707 | 143.00 | -74.93 | 104 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000589025 | chr19:37497442-37497557 | 216.00 | -98.32 | 117 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000589025 | chr19:37497572-37497688 | 213.00 | -101.17 | 108 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000589025 | chr19:37497728-37497826 | 165.00 | -90.02 | 111 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000589025 | chr19:37497358-37497423 | 146.00 | -78.99 | 60 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585397 | chr19:37497472-37497588 | 213.00 | -101.17 | 108 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585397 | chr19:37497364-37497457 | 176.00 | -83.84 | 95 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000585397 | chr19:37497628-37497726 | 165.00 | -90.02 | 111 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000587060 | chr19:37505743-37505858 | 216.00 | -98.32 | 117 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000587060 | chr19:37505873-37505988 | 175.00 | -97.09 | 106 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000587060 | chr19:37505622-37505724 | 163.00 | -91.28 | 108 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000587060 | chr19:37506128-37506247 | 154.00 | -93.52 | 118 | NA | | ENSG00000266916 | hsa-mir-766 | ENST00000587060 | chr19:37505993-37506109 | 140.00 | -71.40 | 116 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000588845 | chr19:37497160-37497284 | 172.00 | -123.26 | 126 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000588845 | chr19:37497483-37497612 | 147.00 | -111.92 | 125 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000585890 | chr19:37497165-37497298 | 157.00 | -114.71 | 138 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000585890 | chr19:37497529-37497658 | 147.00 | -111.92 | 125 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000589025 | chr19:37497453-37497584 | 217.00 | -128.43 | 135 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000589025 | chr19:37497358-37497444 | 168.00 | -107.17 | 89 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000589025 | chr19:37497584-37497727 | 147.00 | -122.07 | 141 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000585397 | chr19:37497364-37497484 | 211.00 | -122.84 | 123 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000585397 | chr19:37497484-37497627 | 147.00 | -122.07 | 141 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000587060 | chr19:37505607-37505745 | 222.00 | -126.39 | 146 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000587060 | chr19:37505754-37505885 | 217.00 | -128.43 | 135 | NA | | ENSG00000266916 | hsa-mir-1247 | ENST00000587060 | chr19:37505885-37506028 | 172.00 | -122.08 | 142 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000588845 | chr19:37497237-37497332 | 171.00 | -79.78 | 93 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000588845 | chr19:37497414-37497497 | 171.00 | -67.65 | 84 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000588845 | chr19:37497512-37497610 | 163.00 | -73.65 | 94 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585890 | chr19:37497460-37497543 | 171.00 | -67.65 | 84 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585890 | chr19:37497166-37497258 | 169.00 | -68.74 | 92 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585890 | chr19:37497346-37497432 | 166.00 | -66.75 | 87 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585890 | chr19:37497558-37497656 | 163.00 | -73.65 | 94 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000589025 | chr19:37497522-37497611 | 210.00 | -84.78 | 89 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000589025 | chr19:37497825-37497908 | 171.00 | -67.65 | 84 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000589025 | chr19:37497711-37497797 | 166.00 | -66.75 | 87 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000589025 | chr19:37497358-37497442 | 143.00 | -80.50 | 84 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585397 | chr19:37497422-37497511 | 210.00 | -84.78 | 89 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585397 | chr19:37497725-37497808 | 171.00 | -67.65 | 84 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000585397 | chr19:37497611-37497697 | 166.00 | -66.75 | 87 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000587060 | chr19:37505823-37505912 | 210.00 | -84.78 | 89 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000587060 | chr19:37506107-37506191 | 200.00 | -68.69 | 88 | NA | | ENSG00000266916 | hsa-mir-708 | ENST00000587060 | chr19:37505612-37505695 | 160.00 | -78.29 | 88 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000266916 | ZNF793-AS1,hsa-mir-766,LRCH3 | KICH,TGCT,LGG,UVM,GBM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000266916.4 | ENST00000588845.2 | 172 | 714 | 196 | | ENSG00000266916.4 | ENST00000585890.1 | 52 | 366 | 524 | | ENSG00000266916.4 | ENST00000589025.4 | 58 | 79 | 255 | | ENSG00000266916.4 | ENST00000585397.1 | 41 | 23 | 148 | | ENSG00000266916.4 | ENST00000587060.1 | 41 | 164 | 39 |
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