 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | MECP2,ZNF14,RFX1,TTC14,ZBTB4,DZIP3,RBM5,ZFP62,ZNF44,ZFP28,NRF1,RBM23,AKAP8,ZNF17,ZNF91,KAT7,ZXDC,ZNF45,SUGP2,DDX42,DMTF1,RXRB,NFXL1,ZNF70,RBM28,DDX31,ZFP30,SALL2,ZFP3,ZMAT1,ZBTB5,THAP9,ZFP14,THAP6,ZNF25,DDX17,SIX5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF70,ZBTB4,MECP2,ZMAT1,DDX17,ZFP2,ZNF14,DDX31,ZNF45 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_347137 | ENSG00000266904.4 | chr19 | 19757382 | - | lincRNA | CTC-559E9.1 | ENST00000586645.4 | lincRNA | CTC-559E9.1-001 | | LncEditing_347180 | ENSG00000266904.4 | chr19 | 19759021 | - | lincRNA | CTC-559E9.1 | ENST00000590092.4 | lincRNA | CTC-559E9.1-007 | | LncEditing_347184 | ENSG00000266904.4 | chr19 | 19759031 | - | lincRNA | CTC-559E9.1 | ENST00000590092.4 | lincRNA | CTC-559E9.1-007 | | LncEditing_347188 | ENSG00000266904.4 | chr19 | 19759057 | - | lincRNA | CTC-559E9.1 | ENST00000590092.4 | lincRNA | CTC-559E9.1-007 | | LncEditing_347204 | ENSG00000266904.4 | chr19 | 19759066 | - | lincRNA | CTC-559E9.1 | ENST00000590092.4 | lincRNA | CTC-559E9.1-007 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000266904 | LncEditing_347137 | GBM | chr19_19757382_- | 1.810978e+00 | 1.290624e+00 | 2.046242e+00 | 3.297989e+00 | 9.737978e-04 | 1.204591e-03 | UP | | ENSG00000266904 | LncEditing_347184 | GBM | chr19_19759031_- | 1.935012e+00 | 1.244973e+00 | 1.571764e+00 | 4.967662e+00 | 6.776489e-07 | 1.340386e-06 | UP | | ENSG00000266904 | LncEditing_347188 | GBM | chr19_19759057_- | 1.674776e+00 | 1.229731e+00 | 2.244037e+00 | 4.472167e+00 | 7.743108e-06 | 1.302323e-05 | UP | | ENSG00000266904 | LncEditing_347204 | GBM | chr19_19759066_- | 1.930287e+00 | 1.236182e+00 | 1.555393e+00 | 5.228688e+00 | 1.707173e-07 | 3.804692e-07 | UP | | ENSG00000266904 | LncEditing_347180 | LGG | chr19_19759021_- | 2.104283e+00 | 1.641679e+00 | 2.792073e+00 | 7.790783e+00 | 6.659519e-15 | 1.343320e-14 | UP | | ENSG00000266904 | LncEditing_347184 | LGG | chr19_19759031_- | 2.080934e+00 | 1.641940e+00 | 2.925431e+00 | 7.599681e+00 | 2.968617e-14 | 5.726348e-14 | UP | | ENSG00000266904 | LncEditing_347188 | LGG | chr19_19759057_- | 2.099531e+00 | 1.690194e+00 | 3.196127e+00 | 6.008447e+00 | 1.873090e-09 | 2.687807e-09 | UP | | ENSG00000266904 | LncEditing_347180 | THCA | chr19_19759021_- | 1.645063e+00 | 1.184239e+00 | 2.108894e+00 | 6.609135e+00 | 3.865716e-11 | 7.594703e-11 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000266904 | LncEditing_347180 | -4.870475e-01 | 2.506444e-04 | 4.017797e-04 | | ENSG00000266904 | LncEditing_347188 | -3.439724e-01 | 8.425862e-04 | 1.059540e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000266904 | ENSG00000168152 | THAP9 | ENSG00000166432 | ZMAT1 | 5 | ACC,GBM,KIRP,LGG,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000266904.4 | ENST00000586645.4 | 106 | 619 | 936 | | ENSG00000266904.4 | ENST00000590092.4 | 124 | 241 | 615 | | ENSG00000266904.4 | ENST00000589910.4 | 124 | 324 | 698 | | ENSG00000266904.4 | ENST00000588223.4 | 113 | 393 | 731 | | ENSG00000266904.4 | ENST00000589508.1 | 91 | 223 | 498 | | ENSG00000266904.4 | ENST00000586816.1 | 80 | 430 | 188 | | ENSG00000266904.4 | ENST00000586885.1 | 35 | 201 | 305 |
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