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lncRNA: ENSG00000266601

Summary for RP11-6N17.3

Gene summary

Gene information	Ensembl ID	ENSG00000266601
	Gene symbol	RP11-6N17.3
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-6N17.3

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000266601	2.437589e+01	-1.390637e+00	7.544643e-02	-1.843211e+01	7.260000e-76	3.380000e-74	DOWN	BRCA
ENSG00000266601	2.389164e+01	-1.157642e+00	1.531337e-01	-7.559682e+00	4.040000e-14	1.030000e-12	DOWN	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000266601	-3.272976e-01	3.183343e-15	PRAD	2.671831e-14

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lncRNA-Protein interaction for RP11-6N17.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000100888	CHD8	55.15	92.0602	Q9HCK8	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000086758	HUWE1	48.18	96.0656	Q7Z6Z7	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000073614	KDM5A	47.84	91.0732	P29375	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000171988	JMJD1C	43.62	94.658	Q15652	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000164190	NIPBL	42.74	96.7382	Q6KC79	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000120733	KDM3B	41.77	90.0136	Q7LBC6	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000108799	EZH1	38.43	92.4848	Q92800	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000186532	SMYD4	37.85	90.3869	Q8IYR2	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000128908	INO80	64.32	94.3778	Q9ULG1	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000149311	ATM	62.85	93.6934	Q13315	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000116731	PRDM2	46.82	93.309	Q13029	TF,Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000139613	SMARCC2	40.65	95.038	Q8TAQ2	Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000198646	NCOA6	33.86	94.2397	Q14686	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000116731	PRDM2	46.82	92.1507	Q13029	TF,Epi	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000125812	GZF1	27.61	90.5436	Q9H116	TF	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000124459	ZNF45	27.08	91.9502	Q02386	TF	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000186272	ZNF17	18.44	91.0919	P17021	TF	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000065970	FOXJ2	7.89	90.1191	Q9P0K8	TF	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000175395	ZNF25	1.94	90.0321	P17030	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000159082	SYNJ1	54.23	92.9678	O43426	RBP	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000213079	SCAF8	49.48	93.5432	Q9UPN6	RBP	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000114127	XRN1	48.36	90.942	Q8IZH2	RBP	NA
ENSG00000266601	ENST00000584276	RP11-6N17.3	ENSG00000100461	RBM23	6.3	92.812	Q86U06	RBP	NA

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lncRNA-DNA interaction for RP11-6N17.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-6N17.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TMEM147,PUSL1,PSMB4,RNF181,TOMM40,LAMTOR2,NDUFA13,INAFM1,S100A11,UXT,MRPL51,AURKAIP1,BLOC1S1,THOC6,PET100,CIB1,ANAPC11,COX5B,ATP6V0B,MAD2L2,SCNM1,COX6A1,PPIH,CHMP2A,NME1,PTTG1,ARPC4,FAM50A,CLPP,AUP1,POLR2H,SERF2,SSR2,TIMM17B,CCNQ,RALY,OST4,YIF1A,KRTCAP2,FAM174C,STXBP2,MRPS34,TSR3,SCAND1,COX6B1,CAPNS1,MYDGF,TMEM208,MRPL55,ROMO1,COPE,TIMM10,MRPS12,NDUFB10,TAGLN2,PFN1,APRT,PSMA7,PPP4C,UBALD2,CCDC124,SDF2L1,PPDPF,LAGE3,DPM3,DYNLL1,MPST,GIPC1,MCRIP1,ELOB,EIF6,SLC50A1,CSNK2B,PPIB,PSME2,LYPLA2,SNRPB,GUK1,PSMD4,GSTO1,PPP1R14B,DTYMK,TXNDC17,AP2S1,NDUFB11,NDUFS6,VKORC1,PFDN2,SSR4,P4HB,NAXE,CIAO2B,NAA10,GFER,NCLN,TRMT112,CFL1,POLR2I,TMEM258,BRMS1,UBE2S,COX8A,C19orf53,NDUFAB1,YIF1B,LSM7,TXNL4A,TMEM219,PPIA,DUSP23,SLC52A2,METTL26,H2AX,FKBP2,NDUFA1,TMSB10

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000266601	ENST00000584276	exon_skip_313472	chr19:5216719-5216767	-9.84	-0.2589	PTPRS	ENST00000587303	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-6N17.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000266601	ENST00000584276	MRPS34	ENSG00000074071	ENST00000613089	-0.5825	2	BRCA	-
ENSG00000266601	ENST00000584276	MYDGF	ENSG00000074842	ENST00000599761	-0.1346	94	BRCA	-
ENSG00000266601	ENST00000584276	MYDGF	ENSG00000074842	ENST00000262947	-0.1013	1	BRCA	-
ENSG00000266601	ENST00000584276	MYDGF	ENSG00000074842	ENST00000599630	-0.1085	44	BRCA	-
ENSG00000266601	ENST00000584276	PSME2	ENSG00000100911	ENST00000560410	-0.1810	254	BRCA	-
ENSG00000266601	ENST00000584276	PSME2	ENSG00000100911	ENST00000216802	-0.1810	254	BRCA	-
ENSG00000266601	ENST00000584276	PSME2	ENSG00000100911	ENST00000615264	-0.1810	254	BRCA	-
ENSG00000266601	ENST00000584276	ELOB	ENSG00000103363	ENST00000262306	-0.2005	72	BRCA	-
ENSG00000266601	ENST00000584276	ELOB	ENSG00000103363	ENST00000494946	-0.1944	239	BRCA	-
ENSG00000266601	ENST00000584276	ELOB	ENSG00000103363	ENST00000572954	-0.1468	102	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000262812	-0.1099	19	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000614388	-0.1340	185	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000349893	-0.1340	187	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000600932	-0.1766	233	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000351079	-0.3002	211	BRCA	-
ENSG00000266601	ENST00000584276	COPE	ENSG00000105669	ENST00000593827	-0.1177	1	BRCA	-
ENSG00000266601	ENST00000584276	UBE2S	ENSG00000108106	ENST00000264552	-0.1131	1	BRCA,STAD	-
ENSG00000266601	ENST00000584276	UBE2S	ENSG00000108106	ENST00000589978	-0.2800	78	BRCA,STAD	-
ENSG00000266601	ENST00000584276	LAMTOR2	ENSG00000116586	ENST00000368305	-0.1515	1	BRCA	-
ENSG00000266601	ENST00000584276	LAMTOR2	ENSG00000116586	ENST00000368302	-0.1258	1	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000472174	-0.1369	1	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000236067	-0.1369	1	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000471859	-0.2650	174	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000461670	-0.1044	26	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000498208	-0.1155	1	BRCA	-
ENSG00000266601	ENST00000584276	ATP6V0B	ENSG00000117410	ENST00000498664	-0.1369	1	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000393028	-0.1018	1	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000393033	-0.1018	1	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000345425	-0.1018	1	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000589631	-0.1018	1	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000586027	-0.1473	39	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000591349	-0.1473	39	BRCA	-
ENSG00000266601	ENST00000584276	GIPC1	ENSG00000123159	ENST00000589497	-0.1053	1	BRCA	-
ENSG00000266601	ENST00000584276	SNRPB	ENSG00000125835	ENST00000438552	-0.1131	163	BRCA	-
ENSG00000266601	ENST00000584276	SNRPB	ENSG00000125835	ENST00000339610	-0.1131	172	BRCA	-
ENSG00000266601	ENST00000584276	SNRPB	ENSG00000125835	ENST00000474384	-0.1061	1	BRCA	-
ENSG00000266601	ENST00000584276	TIMM17B	ENSG00000126768	ENST00000465150	-0.1221	1	BRCA	-
ENSG00000266601	ENST00000584276	TIMM17B	ENSG00000126768	ENST00000376582	-0.1221	1	BRCA	-
ENSG00000266601	ENST00000584276	TIMM17B	ENSG00000126768	ENST00000396779	-0.1221	1	BRCA	-
ENSG00000266601	ENST00000584276	TIMM17B	ENSG00000126768	ENST00000466995	-0.1033	1	BRCA	-
ENSG00000266601	ENST00000584276	TIMM17B	ENSG00000126768	ENST00000495490	-0.1221	1	BRCA	-
ENSG00000266601	ENST00000584276	SDF2L1	ENSG00000128228	ENST00000248958	-0.2149	202	BRCA	-
ENSG00000266601	ENST00000584276	MRPS12	ENSG00000128626	ENST00000308018	-0.1093	5	BRCA	-
ENSG00000266601	ENST00000584276	MRPS12	ENSG00000128626	ENST00000402029	-0.1093	5	BRCA	-
ENSG00000266601	ENST00000584276	TXNDC17	ENSG00000129235	ENST00000570330	-0.1182	145	BRCA	-
ENSG00000266601	ENST00000584276	TOMM40	ENSG00000130204	ENST00000592041	-0.1248	1	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000614890	-0.1658	29	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000338401	-0.1658	31	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000397666	-0.1352	94	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000301686	-0.1658	32	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000397664	-0.1390	40	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000568077	-0.1414	68	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000456420	-0.1414	79	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000564039	-0.1767	1	BRCA	-
ENSG00000266601	ENST00000584276	METTL26	ENSG00000130731	ENST00000568773	-0.8867	17	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000571570	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000572639	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000579978	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000357385	-0.1722	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000584314	-0.1083	77	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000571874	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000578550	-0.1988	5	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000577747	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000392376	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000583839	-0.1182	1	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000578544	-0.1271	121	BRCA	-
ENSG00000266601	ENST00000584276	ANAPC11	ENSG00000141552	ENST00000575195	-0.1223	1	BRCA	-
ENSG00000266601	ENST00000584276	PFDN2	ENSG00000143256	ENST00000368010	-0.2807	1	BRCA	-
ENSG00000266601	ENST00000584276	PPP4C	ENSG00000149923	ENST00000566749	-0.1100	1	BRCA	-
ENSG00000266601	ENST00000584276	PPP4C	ENSG00000149923	ENST00000627746	-0.1100	1	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000459783	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366732	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366733	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366734	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366735	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366736	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366738	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366741	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366740	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366739	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366742	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366744	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000348259	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366747	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366746	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000366731	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000295008	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000336520	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000336300	-0.3339	133	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000391867	-0.3339	134	BRCA	-
ENSG00000266601	ENST00000584276	MRPL55	ENSG00000162910	ENST00000430433	-0.3339	134	BRCA	-
ENSG00000266601	ENST00000584276	S100A11	ENSG00000163191	ENST00000271638	-0.1090	1	BRCA	-
ENSG00000266601	ENST00000584276	NAXE	ENSG00000163382	ENST00000368234	-0.3094	5	BRCA	-
ENSG00000266601	ENST00000584276	POLR2H	ENSG00000163882	ENST00000452961	-0.1415	1	BRCA	-
ENSG00000266601	ENST00000584276	PTTG1	ENSG00000164611	ENST00000352433	-0.1047	12	BRCA	-
ENSG00000266601	ENST00000584276	PTTG1	ENSG00000164611	ENST00000520452	-0.7150	196	BRCA	-
ENSG00000266601	ENST00000584276	PTTG1	ENSG00000164611	ENST00000393964	-0.1538	193	BRCA	-
ENSG00000266601	ENST00000584276	DTYMK	ENSG00000168393	ENST00000445261	-0.4000	54	BRCA	-
ENSG00000266601	ENST00000584276	SLC50A1	ENSG00000169241	ENST00000484157	-0.2082	90	BRCA	-
ENSG00000266601	ENST00000584276	CFL1	ENSG00000172757	ENST00000534769	-0.3038	1	BRCA	-
ENSG00000266601	ENST00000584276	CFL1	ENSG00000172757	ENST00000531413	-0.3038	1	BRCA	-
ENSG00000266601	ENST00000584276	PPP1R14B	ENSG00000173457	ENST00000392210	-0.2139	1	BRCA	-
ENSG00000266601	ENST00000584276	PPP1R14B	ENSG00000173457	ENST00000309318	-0.2139	1	BRCA	-
ENSG00000266601	ENST00000584276	PPP1R14B	ENSG00000173457	ENST00000542235	-0.2139	1	BRCA	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000530047	-0.1171	139	BRCA,STAD	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000527078	-0.4875	236	BRCA,STAD	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000402965	-0.1171	139	BRCA,STAD	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000532887	-0.1240	1	BRCA,STAD	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000329994	-0.1171	137	BRCA,STAD	-
ENSG00000266601	ENST00000584276	SLC52A2	ENSG00000185803	ENST00000526752	-0.1005	1	BRCA,STAD	-
ENSG00000266601	ENST00000584276	H2AX	ENSG00000188486	ENST00000530167	-0.1119	1	BRCA	-
ENSG00000266601	ENST00000584276	H2AX	ENSG00000188486	ENST00000375167	-0.1011	1	BRCA	-
ENSG00000266601	ENST00000584276	LAGE3	ENSG00000196976	ENST00000357360	-0.1255	173	BRCA	-
ENSG00000266601	ENST00000584276	LAGE3	ENSG00000196976	ENST00000621786	-0.1151	1	BRCA	-
ENSG00000266601	ENST00000584276	FAM174C	ENSG00000228300	ENST00000469144	-0.4204	15	BRCA	-
ENSG00000266601	ENST00000584276	NME1	ENSG00000239672	ENST00000013034	-0.4033	4	BRCA,STAD	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000266601.1	ENST00000584276.1	74	904	680

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential