 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | EEF1AKMT3,C6orf89,ABCD1,SEC22B,USP22,CTF1,GPR108,SLC9A1,ILDR1,DHX38,MMRN2,TAP2,CCDC47,CYB561,PIGG,ARHGAP23,EPB41L1,STAT2,HS1BP3,PLEKHM1,RHOT1,SSH3,COMMD2,SLC18B1,USP30,ARL1,TSPAN3,ATXN7L3,CARD10,PPP1R3D,STT3A,SNX11,CYB5D2,POLDIP2,ERAL1,ACP2,CISD3,RING1,IL15RA,ZNFX1,RIPOR1,IKBKG,DHX58,BACE1,TMEM231,ORMDL3,CCDC149,TMEM79,MOV10,SLC48A1,TBCCD1,TBC1D9B,DUSP3,RASIP1,CBX1,HGS,PGAP3,COMT,ANKRD11,MYO1C,NBR1,ZBED8,DDOST,TMEM185B,TCN2,F2R,PLD2,DHX35,IPO13,AARS1,ARHGEF40,UBXN2A,SIX5,TMEM127,SLC39A11,PPP1R9B,PHC2,MBTPS1,PLS1,BRD2,ARSD,SNX4,COG7,DCLRE1A,B3GALNT1,ARL4D,GAS8,DDX42,TIFA,ARHGEF11,PEX10,RALBP1,ZFP3,RFFL,FAAP100,SLC26A11,SNX33,AMFR,NICN1,GALNS,NCSTN,TRIM65,IQSEC2,EFTUD2,COG8,SRP68,DCAF7,GBP3,ZDHHC7,CTDSP1,PML,PLD3,WARS1,ADD1,PHF12,MRPL10,PSMB9,SLC12A7,ARHGAP27,IFT140,NOTCH4,CSNK1D,MRM1,AP2B1,WIPI1,DCTD,RNF135,AGPAT1,C17orf75,SLC38A10,P4HTM,NAAA,HIP1,SP2,ABHD15,KLF3,ATE1,ANKRD65,MOGS,KCTD18,RHBDF2,PNPO,FLCN,USP40,SYNGR2,UCHL5,LRP3,GIMAP8,TMEM199,MED29,RAB11FIP3,C2orf68,HLA-B,CASKIN2,PIGK,ADPRH,FXR2,TEAD3,AP3D1,FRMD8,ST3GAL2,TKFC,FAM104A,SFXN3,CASP1,MPPE1,TMEM104,EXOC7,ANKFY1,DHRS11,CCDC51,PSMD12,MTCH1,ZDHHC1,CLCN7,FBXO9,IDH1,SPRYD4,PDGFB,EXO5,TAP1,STARD3,HES1,IGFBP7,RBM23,NLGN2,SMARCE1,MKS1,DBR1,STING1,ATF6B,COX11,TK2,SNX17,RUNDC1,TTC30B,DCAKD,IRF1,RPS6KB1,PPP4R3B,INCA1,SLC25A35,RFNG,ALG12,MLX,CPPED1,FKBP10,CHST14,STAT3,ZFAND3,DNM2,ACBD4,TIGD6,PDK2,TERF2,AFAP1L2,BBS10,MLH3,CPM,RBM43,TTC30A,TAPBP,AP2A1,KLHDC8B,TRIM26,BATF2,VPS53,SUOX,PSKH1,GOSR2,MEAK7,HEATR6,HEXIM2,C1RL,IRF2,MFSD11,NMT1,ANKRA2,CCDC121,ACTR1B,HOMEZ,MOB3C,ERAP1,ADCY6,SPOP,AAK1,RETREG3,TMUB2,SDF4,STAT1,PCGF2,DGKQ,PCYT1A,RUSF1,ERBB2,MYO18A,UBA7,GNS,BBS4,UXS1,ORAI2,SORT1,ATP6V0D1,GTF2H3,NDRG2,ADAT1,MED24,WBP1,MED1,SLC38A7,SCARB2,GGA3,LGALS3BP,FPGT,DAP,NPLOC4,TAF6L,PLA2G4C,TMEM167B,GPATCH8,LEPROT,PGS1,CHPF,CD99L2,ZXDC,GBA,VAC14,INTS3,NSRP1,NAGLU,PIP4K2C,EFCAB14,RILPL1,PIEZO1,TPMT,SLC25A43,TFE3,B4GAT1,BECN1,ADAM15,ZC3H4,FLOT2,HID1,NT5C3B,PEX12,RNH1,GSTM4,UBE2L6,BCAR1,G6PC3,HEXA,CALCOCO1,IGFBP4,CUEDC1,CHTF8,LMF2,CCDC43,PLXNB2,AKAP10,PSMD3,PPCS,TMEM99,N4BP1,CCDC102A,NOTCH1,SCARF2,PIP4K2B,LSM12,SPHK2,FTO,FBXL5,TRIM62,APOL3,KIF1C,ACLY,TMEM107,COIL,IL18BP,EPOP,TNFRSF1A,P4HB,VPS52,GGT5,SLC25A23,HEXIM1,PSME3,C6orf47,NLRX1,CWC25,ARSB,SPATA20,GRB2,SLCO2A1,LZTS2,EIF2D,EPN3,LMAN2,APPBP2,KCTD11,HLA-E,EMCN,TYSND1,VPS11,SH3BP5,GHDC,CNP,RILPL2,MTF1,SHISA5,PRPSAP1,GBP4,RXRB,AP5B1,IFI35,FBRS,TMEM35B,NGRN,DCAF11,WHAMM,ASB8,MED13,GAA | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RPSA,RPS8 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000266208 | ENST00000578774 | exon_skip_322579 | chr19:55455635-55455845 | -45.34 | -0.2212 | ISOC2 | ENST00000425675 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40362210-40362293 | 202.00 | -75.31 | 80 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40360772-40360848 | 198.00 | -65.74 | 75 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361561-40361636 | 187.00 | -79.31 | 73 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40360699-40360777 | 172.00 | -59.89 | 80 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361007-40361081 | 171.00 | -75.66 | 75 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40360865-40360936 | 160.00 | -63.66 | 75 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40360920-40361000 | 159.00 | -66.77 | 74 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361331-40361405 | 159.00 | -72.97 | 77 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40362415-40362492 | 154.00 | -72.11 | 81 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361693-40361780 | 151.00 | -75.71 | 84 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361961-40362031 | 151.00 | -70.30 | 74 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361226-40361297 | 150.00 | -70.23 | 70 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40361404-40361471 | 150.00 | -76.48 | 74 | NA | | ENSG00000266208 | hsa-mir-92a-1 | ENST00000578774 | chr17:40362036-40362119 | 140.00 | -79.10 | 79 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40360923-40361000 | 181.00 | -55.08 | 73 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40360807-40360887 | 180.00 | -61.75 | 76 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40361005-40361077 | 173.00 | -67.56 | 59 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40361935-40362017 | 167.00 | -70.69 | 78 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40361356-40361427 | 162.00 | -74.20 | 69 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40361804-40361885 | 160.00 | -71.33 | 79 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40362205-40362284 | 160.00 | -61.66 | 75 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40362351-40362421 | 149.00 | -51.59 | 68 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40362632-40362705 | 147.00 | -63.15 | 71 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40362095-40362175 | 144.00 | -64.34 | 75 | NA | | ENSG00000266208 | hsa-mir-92a-2 | ENST00000578774 | chr17:40361616-40361686 | 141.00 | -58.36 | 71 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000266208 | ENSG00000068079 | IFI35 | ACC,CHOL,GBM,KICH,KIRC,MESO,SKCM | GBM | | | ENSG00000266208 | ENSG00000117226 | GBP3 | ACC,DLBC,GBM,KICH,TGCT | GBM | | | ENSG00000266208 | ENSG00000134470 | IL15RA | ACC,DLBC,GBM,KIRC,TGCT,THYM | GBM | | | ENSG00000266208 | ENSG00000137752 | CASP1 | ACC,GBM,KICH,SARC,TGCT,THYM | GBM | | | ENSG00000266208 | ENSG00000141736 | ERBB2 | ACC,CHOL,COAD,GBM,PCPG,TGCT,THYM,UVM | GBM | | | ENSG00000266208 | ENSG00000145365 | TIFA | ACC,GBM,TGCT,THCA,THYM | GBM | | | ENSG00000266208 | ENSG00000156587 | UBE2L6 | ACC,DLBC,GBM,PAAD,SARC,TGCT | GBM | | | ENSG00000266208 | ENSG00000162654 | GBP4 | ACC,DLBC,GBM,KICH,MESO,PAAD,THYM | GBM | | | ENSG00000266208 | ENSG00000168394 | TAP1 | ACC,CHOL,DLBC,GBM,KIRC,PAAD,SARC | GBM | | | ENSG00000266208 | ENSG00000240065 | PSMB9 | ACC,GBM,KIRC,SARC,TGCT | GBM | | | ENSG00000266208 | ENSG00000167861 | HID1 | BLCA,BRCA,KICH,KIRP,PCPG,THCA | PCPG | | | ENSG00000266208 | ENSG00000141013 | GAS8 | BRCA,CHOL,HNSC,PCPG,THCA,THYM | PCPG | | | ENSG00000266208 | ENSG00000108679 | LGALS3BP | CHOL,DLBC,GBM,TGCT,THYM | GBM | | | ENSG00000266208 | ENSG00000204592 | HLA-E | CHOL,DLBC,GBM,KIRC,SARC,TGCT | GBM | | | ENSG00000266208 | ENSG00000205084 | TMEM231 | CHOL,KICH,PCPG,PRAD,THYM | PCPG | | | ENSG00000266208 | ENSG00000234745 | HLA-B | CHOL,DLBC,GBM,KIRC,TGCT | GBM | | | ENSG00000266208 | ENSG00000137496 | IL18BP | DLBC,GBM,KIRC,PAAD,SARC | GBM | | | ENSG00000266208 | ENSG00000139178 | C1RL | DLBC,GBM,KICH,TGCT,THYM | GBM | | | ENSG00000266208 | ENSG00000182179 | UBA7 | DLBC,GBM,KIRC,SARC,TGCT | GBM | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-1,GBP2 | TGCT,CHOL,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-1,GNA11 | TGCT,CHOL,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-1,STX12 | TGCT,CHOL,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-1,NPTN | TGCT,CHOL,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CD59 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,DSTN | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CALCOCO2 | TGCT,CHOL,PRAD,DLBC,SARC | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,SMIM10 | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,UEVLD | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,TMEM127 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,SFXN3 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CAST | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,TCN2 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,DNASE2 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CHMP3 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,VCL | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,GBP2 | TGCT,CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,TFE3 | CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,ZNF25 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,LEPROT | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,FBXO32 | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,SPRYD3 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,DUSP3 | CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,SDC3 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,GNA11 | TGCT,CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,LGALS3BP | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,STX12 | TGCT,CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CSF1R | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,FLNA | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,VWA5A | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,NPTN | TGCT,CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,MXRA7 | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,ZBTB4 | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,HSPB8 | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,CREBRF | CHOL,PRAD,DLBC,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,TSPAN2 | TGCT,CHOL,PRAD,SARC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,WBP1L | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,OPTN | TGCT,CHOL,PRAD,DLBC,THYM | | ENSG00000266208 | CTD-2267D19.3,hsa-mir-92a-2,PLXDC2 | TGCT,CHOL,PRAD,DLBC,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000266208.1 | ENST00000578774.1 | 219 | 1615 | 956 |
|
