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lncRNA: ENSG00000265962 |
Summary for GACAT2 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000265962 | Gene symbol | GACAT2 |
| Gene name | gastric cancer associated transcript 2 | |
| HGNC | 50516 | |
| Entrez ID | 100287082 | |
| Gene type | antisense | |
| Synonyms | 18p11.22|GACAT2 | |
| UniProtAcc |
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Structure and expression level for GACAT2 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000265962 | 4.488900e+01 | 4.990790e+00 | 9.618406e-01 | 5.188791e+00 | 2.120000e-07 | 1.580000e-06 | UP | CHOL |
| ENSG00000265962 | 1.021271e+02 | 4.973172e+00 | 2.524510e-01 | 1.969955e+01 | 2.180000e-86 | 1.950000e-84 | UP | KIRC |
| ENSG00000265962 | 8.508663e+01 | 5.507142e+00 | 1.017092e+00 | 5.414594e+00 | 6.140000e-08 | 2.980000e-06 | UP | PCPG |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000265962 | 4.421670e-01 | 2.356969e-03 | CHOL | 3.465404e-03 |
| ENSG00000265962 | 3.840171e-01 | 8.458683e-23 | KIRC | 1.057335e-21 |
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lncRNA-Protein interaction for GACAT2 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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