 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | AKNA,ELF4,SLIRP,ISG20,RNH1,CEBPA,JDP2,SP140,FOXP3,HLX,NR1H3,TLR8,HIC1,STAT4,IRF3,BATF3,EGR2,SP100,IRF2,ETV7,JAZF1,RBMS1,IMP3,PHF19,SNAI3,TFEB,KLF2,RUNX3,ETS1,MBD3,AHR,ZEB2,CENPB,FOXP1,RUNX1,MAFB,NFKB1,GLMP,MAF,MEF2C,BCL6B,STAT2,IKZF3,TEP1,MBD2,FLI1,DHX58,IRF7,HEYL,TFEC,USF1,SP110,QKI,IRF1,TFE3,SPI1,ZNF18,MOV10,BATF2,STAT1,CREM,STAT6 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | TFEC,RUNX3,GLMP,CENPB,ZNF18,MBNL1,PHF19,STAT2,KLF2,STAT4,IKZF3,HIC1,TEP1,ETV7,FOXS1,FLI1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | GTF2I,ZFR,SF3A1,ADNP,PPIL4,AKAP1 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ILF3,AKAP1,RBMX,SF3A1,TSN,KAT7 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000265743 | ENST00000579561 | exon_skip_75398 | chr11:72692752-72692785 | -8.33 | -4.1650 | ARAP1 | ENST00000393605 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_33516 | chr1:156938417-156938513 | -8.86 | -0.1737 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_96112 | chr12:109945259-109945349 | -9.84 | -0.1158 | GIT2 | ENST00000355312 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_368285 | chr22:29329711-29329720 | -2.79 | -1.3950 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_382356 | chr3:37091466-37091538 | -7.50 | -0.1293 | LRRFIP2 | ENST00000336686 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000265743 | ENST00000579561 | exon_skip_434332 | chr5:34813573-34813660 | -9.76 | -0.1375 | RAI14 | ENST00000265109,ENST00000428746,ENST00000503673 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_482403 | chr8:27445793-27445919 | -10.66 | -0.2600 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_484062 | chr8:73030335-73030395 | -6.91 | -0.1382 | TERF1 | ENST00000276603 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_48713 | chr10:34336198-34336243 | -5.42 | -0.2853 | PARD3 | ENST00000374789 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_146683 | chr16:85780378-85780473 | -9.89 | -0.1301 | EMC8 | ENST00000253457 | Frame-shift | | ENSG00000265743 | ENST00000579561 | exon_skip_378912 | chr3:152446703-152446757 | -5.51 | -0.1777 | MBNL1 | ENST00000282486,ENST00000463374 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_423795 | chr4:55888887-55888932 | -7.04 | -0.2347 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_456460 | chr6:17771113-17771218 | -9.61 | -0.1045 | KIF13A | ENST00000259711 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_499771 | chr9:128592982-128593042 | -7.13 | -0.1620 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_13507 | chr1:162592731-162592782 | -6.00 | -0.1765 | UAP1 | ENST00000271469,ENST00000367925 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_462673 | chr6:138926400-138926481 | -7.77 | -0.1126 | REPS1 | ENST00000450536 | In-frame | | ENSG00000265743 | ENST00000579561 | exon_skip_379903 | chr3:184180644-184180650 | -2.01 | -0.4020 | AP2M1 | ENST00000292807 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000265743 | ENSG00000169554 | ZEB2 | ENSG00000152601 | MBNL1 | 5 | COAD,KIRC,PAAD,STAD,TGCT | | ENSG00000265743 | ENSG00000169554 | ZEB2 | ENSG00000170581 | STAT2 | 5 | COAD,ESCA,KIRC,PAAD,STAD | | ENSG00000265743 | ENSG00000169554 | ZEB2 | ENSG00000161405 | IKZF3 | 5 | COAD,KIRC,LUAD,PAAD,THCA | | ENSG00000265743 | ENSG00000169554 | ZEB2 | ENSG00000177374 | HIC1 | 6 | BRCA,ESCA,LUSC,PAAD,STAD,TGCT | | ENSG00000265743 | ENSG00000114861 | FOXP1 | ENSG00000151702 | FLI1 | 5 | ACC,COAD,LUSC,PCPG,SKCM | | ENSG00000265743 | ENSG00000169554 | ZEB2 | ENSG00000151702 | FLI1 | 11 | BLCA,BRCA,COAD,ESCA,KIRC,LUSC,PAAD,PCPG,STAD,TGCT,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000265743.1 | ENST00000579561.1 | 110 | 195 | 527 |
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