Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000265678

Summary for RP11-1376P16.2

Gene summary

Gene information	Ensembl ID	ENSG00000265678
	Gene symbol	RP11-1376P16.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-1376P16.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000265678	2.805126e+01	1.700054e+00	3.642748e-01	4.666956e+00	3.060000e-06	1.830000e-05	UP	CHOL
ENSG00000265678	6.946001e+01	1.875509e+00	2.337946e-01	8.022037e+00	1.040000e-15	1.580000e-14	UP	KIRP

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000265678	6.250684e-01	4.430879e-06	CHOL	4.839440e-05

Top

lncRNA-Protein interaction for RP11-1376P16.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000123636	BAZ2B	83.41	90.7312	Q9UIF8	TF,Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000005483	KMT2E	64.87	92.8332	Q8IZD2	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000168769	TET2	49.38	92.0426	Q6N021	TF,Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000183495	EP400	42.94	94.0357	Q96L91	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000118058	KMT2A	67.92	94.3782	Q03164	TF,Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000085224	ATRX	60.7	91.4395	P46100	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000185658	BRWD1	59.27	91.5448	Q9NSI6	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000141027	NCOR1	54.82	92.1099	O75376	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000131149	GSE1	49.75	92.0674	Q14687	Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000139613	SMARCC2	48.12	90.9178	Q8TAQ2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000118058	KMT2A	67.92	94.0739	Q03164	TF,Epi	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000168769	TET2	49.38	92.1659	Q6N021	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000106344	RBM28	55.04	91.0808	Q9NW13	RBP	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000137776	SLTM	53.75	91.9951	Q9NWH9	RBP	ENCODE
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000133226	SRRM1	25.42	92.5031	Q8IYB3	RBP	NA
ENSG00000265678	ENST00000579979	RP11-1376P16.2	ENSG00000167978	SRRM2	17.86	92.0386	Q9UQ35	RBP	NA

Top

lncRNA-DNA interaction for RP11-1376P16.2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-1376P16.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000265678	ENST00000579979	exon_skip_382458	chr3:38131595-38131638	-7.78	-0.2103	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP11-1376P16.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000265678.1	ENST00000579979.1	75	43	270

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential