 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000265458 | ENST00000578344 | exon_skip_156308 | chr17:75671815-75671863 | -7.39 | -0.1945 | SAP30BP | ENST00000584667 | In-frame | | ENSG00000265458 | ENST00000578344 | exon_skip_120741 | chr15:34228428-34228589 | -16.63 | -0.1498 | EMC4 | ENST00000267750 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000265458 | ENST00000578344 | exon_skip_484062 | chr8:73030335-73030395 | -4.91 | -0.1116 | TERF1 | ENST00000276603 | In-frame | | ENSG00000265458 | ENST00000578344 | exon_skip_114214 | chr14:73284080-73284374 | -15.37 | -0.1114 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000265458 | ENST00000578344 | exon_skip_494079 | chr8:144099080-144099205 | -13.82 | -0.1133 | SHARPIN | ENST00000398712 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000265458 | hsa-mir-221 | ENST00000579095 | chr17:82454444-82454571 | 178.00 | -99.02 | 125 | NA | | ENSG00000265458 | hsa-mir-221 | ENST00000579095 | chr17:82454323-82454451 | 167.00 | -100.30 | 121 | NA | | ENSG00000265458 | hsa-mir-221 | ENST00000578344 | chr17:82457405-82457513 | 183.00 | -84.78 | 117 | NA | | ENSG00000265458 | hsa-mir-222 | ENST00000579095 | chr17:82454481-82454589 | 185.00 | -93.84 | 100 | NA | | ENSG00000265458 | hsa-mir-222 | ENST00000579095 | chr17:82454364-82454475 | 176.00 | -102.33 | 109 | NA | | ENSG00000265458 | hsa-mir-222 | ENST00000579095 | chr17:82454274-82454372 | 173.00 | -108.17 | 93 | NA | | ENSG00000265458 | hsa-mir-222 | ENST00000578344 | chr17:82457377-82457490 | 175.00 | -104.62 | 112 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000265458 | NARF-AS2,hsa-mir-221,BLOC1S5 | KICH,THCA,GBM,THYM,KIRP | | ENSG00000265458 | NARF-AS2,hsa-mir-221,FAAH | KICH,THCA,GBM,THYM,KIRP | | ENSG00000265458 | NARF-AS2,hsa-mir-222,BLOC1S5 | KICH,THCA,GBM,THYM,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000265458.1 | ENST00000579095.1 | 126 | 645 | 1025 | | ENSG00000265458.1 | ENST00000578344.1 | 111 | 335 | 0 |
|
