 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TEAD4,NFKB2,KLF16 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000264575 | ENST00000581067 | exon_skip_322579 | chr19:55455635-55455845 | -34.68 | -0.1708 | ISOC2 | ENST00000425675 | In-frame | | ENSG00000264575 | ENST00000581067 | exon_skip_331103 | chr2:171712766-171712826 | -11.73 | -0.2213 | DYNC1I2 | ENST00000397119,ENST00000409773 | In-frame | | ENSG00000264575 | ENST00000581067 | exon_skip_150854 | chr17:32366664-32366757 | -10.21 | -0.1134 | ZNF207 | ENST00000321233 | In-frame | | ENSG00000264575 | ENST00000581067 | exon_skip_4279 | chr1:36174897-36175008 | -17.07 | -0.2276 | MAP7D1 | ENST00000373151 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000264575 | ENST00000581067 | exon_skip_287763 | chr17:28884224-28884315 | -23.56 | -0.2873 | FLOT2 | ENST00000394908 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237697-5237772 | 167.00 | -67.47 | 77 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237298-5237366 | 164.00 | -76.68 | 69 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237366-5237444 | 163.00 | -68.23 | 69 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5236725-5236789 | 160.00 | -75.32 | 65 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5238109-5238180 | 159.00 | -63.81 | 62 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5236974-5237049 | 152.00 | -73.03 | 74 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237942-5238012 | 148.00 | -69.56 | 69 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237859-5237935 | 147.00 | -71.54 | 75 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5238230-5238306 | 146.00 | -59.25 | 68 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237041-5237112 | 144.00 | -72.61 | 72 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5237120-5237188 | 144.00 | -64.08 | 63 | NA | | ENSG00000264575 | hsa-mir-21 | ENST00000581067 | chr18:5236883-5236964 | 142.00 | -71.58 | 78 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5236767-5236879 | 204.00 | -99.92 | 109 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237873-5238000 | 201.00 | -103.27 | 119 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237251-5237363 | 191.00 | -120.08 | 114 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5238245-5238357 | 188.00 | -81.27 | 109 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5238448-5238549 | 187.00 | -65.90 | 105 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237031-5237129 | 185.00 | -101.02 | 110 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237775-5237877 | 185.00 | -92.00 | 109 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237997-5238120 | 184.00 | -92.36 | 123 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5238116-5238237 | 182.00 | -90.80 | 121 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237532-5237635 | 170.00 | -90.92 | 100 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237137-5237257 | 168.00 | -104.12 | 121 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237411-5237510 | 152.00 | -104.61 | 106 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5236934-5237042 | 141.00 | -90.46 | 107 | NA | | ENSG00000264575 | hsa-mir-221 | ENST00000581067 | chr18:5237654-5237766 | 141.00 | -87.85 | 109 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5236972-5237077 | 229.00 | -117.54 | 110 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5238047-5238155 | 214.00 | -99.61 | 107 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237084-5237208 | 211.00 | -107.71 | 124 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237254-5237368 | 211.00 | -128.93 | 111 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237801-5237904 | 210.00 | -105.06 | 109 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5236804-5236905 | 197.00 | -104.30 | 110 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237417-5237521 | 196.00 | -118.98 | 110 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237656-5237759 | 184.00 | -92.12 | 102 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237892-5237998 | 177.00 | -98.80 | 104 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5238169-5238287 | 176.00 | -100.95 | 118 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5238333-5238446 | 160.00 | -84.90 | 111 | NA | | ENSG00000264575 | hsa-mir-222 | ENST00000581067 | chr18:5237535-5237656 | 153.00 | -98.71 | 118 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000264575 | LINC00526,hsa-mir-221,TCAIM | PCPG,KICH,CHOL,LGG,GBM | | ENSG00000264575 | LINC00526,hsa-mir-222,TCAIM | PCPG,KICH,CHOL,LGG,GBM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000264575.1 | ENST00000581067.1 | 153 | 976 | 515 |
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