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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000264107

Summary for MIR4733HG

check button Gene summary

Gene informationEnsembl ID

ENSG00000264107

Gene symbol

MIR4733HG

Gene nameMIR4733 host gene
HGNC

55332

Entrez ID
Gene typeantisense
SynonymsMIR4733HG|RP11-848P1.5|17q11.2
UniProtAcc

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Structure and expression level for MIR4733HG

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002641078.394330e+011.301337e+004.066769e-013.199928e+001.374621e-034.993584e-03UPGBM

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000264107-3.049955e-013.658126e-03KICH4.557109e-03

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lncRNA-Protein interaction for MIR4733HG

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for MIR4733HG

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MIR4733HG

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
TBC1D14,CNOT1,IDH3A,NEK4,INTS7,KDM4A,GSK3B,CBL,HEATR1,MNT,SLC36A1,EXOC5,BOD1L1,HCFC1,SUSD6,UHRF1BP1L,RNF123,HERC2,UHMK1,BECN1,SBNO1,USF3,SBNO2,NUP155,KPNA6,DNAJC16,QTRT2,UBR1,KLHL18,SPIRE1,PPP1R12A,GNL3L,PI4KA,NOP9,MBNL1,TAOK3,LARP1,UBXN7,FOXJ3,EDC4,RAB3GAP1,MEF2D,CEP104,KIAA1109,HPS3,EDEM1,MTREX,PLEKHB2,ARPP19,ARHGAP21,SMG1,SLAIN2,ANKFY1,CDV3,DNAJC14,ERBIN,ANKRD28,PSMC1,VPS13B,SGTB,NSUN2,SEC24B,ANKRD11,ITPRIPL2,CLTC,ZFYVE26,KCTD10,CSNK1G1,ATP2A2,CELF2,UBXN2B,ACAP2,KMT2D,MACF1,ATP11B,TOR1AIP1,BCL2L13,RIC1,PRRC2C,VTI1A,ZC3H13,PDPK1,DCAF6,NACC2,MCCC2,M6PR,PHF3,ANKRD27,WWP1,FBXO38,GBF1,TAF1,STRN,RNF111,HAUS6,TP53BP1,PCNX1,UBR4,CDC42SE2,PPIP5K2,VIRMA,ACO2,TMEM33,SEC24D,USP32,CYLD,IQGAP1,G3BP1,TMF1,ARHGEF6,SLMAP,RNF31,CLIP1,BMS1,AP4E1,VHL,RPS6KA3,PIAS1,DDX6,NRDC,SEC23A,CEP192,LACTB,NCOA2,UBE3B,RC3H2,WDR55,LUZP1,PDE7A,DDX3X,AFF4,ITSN2,CCSER2,ASXL2,PRR14L,ROCK1,MAPK1,NOM1,RB1CC1,KLF13,TARS1,UBN1,POLR2B,ABHD2,COPB2,FRYL,CLPX,TBC1D2B,AGFG1,MYCBP2,BAZ2A,PIKFYVE,LARP4,NIPA2,USP9X,TDP1,SRFBP1,XIAP,ZCCHC2,UBE4B,ASH1L,DYNC1LI2,NFX1,NDST1,BRPF3,KBTBD4,MIDEAS,ZNF106,RASA1,GNPTAB,ZWILCH,C16orf70,MYO1E,FOXN3,CERT1,WNK1,STK35,UVRAG,SSH1,SUN2,RP2,OSBPL8,MAN2B1,MED13L,EPG5,WDR12,SNX1,KIAA0232,NUP98,KIAA0586,ANKRD13A,SMCHD1,RLIM,MTF1,ACTR2,FBXW2,MTFR1,ZYG11B,NCOA3,PPARA,PLBD2,SRPK2,AQR,TRIP12,ATP9B,USP7,GTF2A1,MTHFD1,TFIP11,SNX2,PRKAA1,NFAT5,KIF2A,MYO18A,GTF2I,REST,TGOLN2,CNOT6L,HBP1,SLC12A6,PDE12,EIF4G2,SPTLC1,THRAP3,CSNK1A1,CS,TMOD3,CAB39,HUWE1,HEATR5B,AKAP13,BIRC6,POLK,TEP1,VCPIP1,SEC31A,TBC1D9B,AFF1,ZZEF1,MIEF1,TAF2,CAST,USP8,PICALM,TLK1,SMARCA5,PLAA,SNX27,RABEP1,SH3PXD2B,TAOK2,ELK4,ARFGEF1,STK4,HEATR5A,WDR3,USP10,DPP8,ATF1,FNDC3B,ARCN1,CELF1,SPG11,NEMF,INPP4A,SRCAP,GLYR1,DHX36,VPS13C,FYCO1,ZDHHC7,RAB8A,RAP1GDS1,RAPGEF1
Exist in public source
FNIP1

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000264107ENST00000583377exon_skip_81408chr12:32737864-32737942-14.16-0.1940DNM1LENST00000549701In-frame
ENSG00000264107ENST00000583377exon_skip_353171chr20:58898940-58898985-16.46-0.3919GNASENST00000371085,ENST00000371100In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000264107ENST00000583377exon_skip_111863chr14:23565815-23565892-18.16-0.2977AP1G2ENST00000308724,ENST00000397120Frame-shift
ENSG00000264107ENST00000583377exon_skip_339830chr2:69423581-69423717-15.26-0.1211NFU1ENST00000410022Frame-shift
ENSG00000264107ENST00000583377exon_skip_374375chr3:49675182-49675309-19.11-0.1606APEHENST00000296456Frame-shift
ENSG00000264107ENST00000583377exon_skip_23458chr1:26300925-26301024-16.61-0.1888UBXN11ENST00000374221,ENST00000374222In-frame
ENSG00000264107ENST00000583377exon_skip_81540chr12:42384939-42384996-10.11-0.4814PPHLN1ENST00000395568In-frame
ENSG00000264107ENST00000583377exon_skip_140232chr16:634888-634956-10.85-0.1722METTL26ENST00000301686Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for MIR4733HG

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name
LncEditing_321941ENSG00000264107.1chr1731093386-antisenseRP11-848P1.5ENST00000583377.1antisenseRP11-848P1.5-001

check buttonEdited-associated DElncRNAs in cancer.
Differentially expressed gene
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange
ENSG00000264107LncEditing_321941OVchr17_31093386_-3.425322e+002.466962e+002.111914e+004.162190e+003.152094e-053.751909e-05UP

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000264107ENST00000583377ATP2A2ENSG00000174437ENST00000553144-0.1842138-GBM
ENSG00000264107ENST00000583377UBE4BENSG00000130939ENST00000488228-0.1308125-GBM
ENSG00000264107ENST00000583377RLIMENSG00000131263ENST00000332687-0.18751-GBM
ENSG00000264107ENST00000583377KIAA1109ENSG00000138688ENST00000442707-0.3418240-GBM
ENSG00000264107ENST00000583377SBNO1ENSG00000139697ENST00000267176-0.12061-GBM
ENSG00000264107ENST00000583377SBNO1ENSG00000139697ENST00000420886-0.12061-GBM
ENSG00000264107ENST00000583377SLC12A6ENSG00000140199ENST00000290209-0.19621-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000342085-0.10371-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000441549-0.148025-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000268673-0.10371-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000474706-0.111555-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000492021-0.14461-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000389224-0.258563-GBM
ENSG00000264107ENST00000583377PDPK1ENSG00000140992ENST00000478708-0.111965-GBM
ENSG00000264107ENST00000583377ZCCHC2ENSG00000141664ENST00000588676-0.120965-GBM
ENSG00000264107ENST00000583377DCAF6ENSG00000143164ENST00000470721-0.1409248-GBM
ENSG00000264107ENST00000583377TAOK2ENSG00000149930ENST00000543033-0.128357-GBM
ENSG00000264107ENST00000583377TAOK2ENSG00000149930ENST00000279394-0.11451-GBM
ENSG00000264107ENST00000583377LARP1ENSG00000155506ENST00000336314-0.11831-GBM
ENSG00000264107ENST00000583377LARP1ENSG00000155506ENST00000518892-0.102571-GBM
ENSG00000264107ENST00000583377SMG1ENSG00000157106ENST00000446231-0.15131-GBM
ENSG00000264107ENST00000583377SMG1ENSG00000157106ENST00000565324-0.2146201-GBM
ENSG00000264107ENST00000583377SMG1ENSG00000157106ENST00000568038-0.1040294-GBM
ENSG00000264107ENST00000583377SMG1ENSG00000157106ENST00000561947-0.13291-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000327697-0.1430119-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000432042-0.177571-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000457726-0.10281-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000443204-0.131853-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000433785-0.1507119-GBM
ENSG00000264107ENST00000583377RNF123ENSG00000164068ENST00000444689-0.10114-GBM
ENSG00000264107ENST00000583377NEMFENSG00000165525ENST00000556672-0.1215322-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000378330-0.139070-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000301030-0.139070-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000330736-0.12621-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000562275-0.125843-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000378332-0.11101-GBM
ENSG00000264107ENST00000583377ANKRD11ENSG00000167522ENST00000563291-0.1726141-GBM
ENSG00000264107ENST00000583377KMT2DENSG00000167548ENST00000301067-0.10751-GBM
ENSG00000264107ENST00000583377KMT2DENSG00000167548ENST00000526209-0.193243-GBM
ENSG00000264107ENST00000583377LUZP1ENSG00000169641ENST00000314174-0.10241-GBM
ENSG00000264107ENST00000583377USP32ENSG00000170832ENST00000300896-0.1356114-GBM
ENSG00000264107ENST00000583377USP32ENSG00000170832ENST00000592339-0.135732-GBM
ENSG00000264107ENST00000583377USP32ENSG00000170832ENST00000593071-0.1356131-GBM
ENSG00000264107ENST00000583377USP32ENSG00000170832ENST00000589552-0.1182105-GBM
ENSG00000264107ENST00000583377USP32ENSG00000170832ENST00000590297-0.1196131-GBM
ENSG00000264107ENST00000583377KIAA0232ENSG00000170871ENST00000508423-0.175032-GBM
ENSG00000264107ENST00000583377VCPIP1ENSG00000175073ENST00000310421-0.16271-GBM
ENSG00000264107ENST00000583377USF3ENSG00000176542ENST00000316407-0.16771-GBM
ENSG00000264107ENST00000583377USF3ENSG00000176542ENST00000478658-0.2381125-GBM
ENSG00000264107ENST00000583377PRR14LENSG00000183530ENST00000330495-0.11171-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000533112-0.11421-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000531253-0.11421-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000527372-0.11421-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000628822-0.11421-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000530254-0.12331-GBM
ENSG00000264107ENST00000583377MYO18AENSG00000196535ENST00000588791-0.1166108-GBM
ENSG00000264107ENST00000583377ITSN2ENSG00000198399ENST00000449392-0.1405115-GBM
ENSG00000264107ENST00000583377RABEP1ENSG00000029725ENST00000572250-0.1527146-GBM
ENSG00000264107ENST00000583377MACF1ENSG00000127603ENST00000484793-0.1875123-GBM
ENSG00000264107ENST00000583377MACF1ENSG00000127603ENST00000530275-0.17461-GBM
ENSG00000264107ENST00000583377USP7ENSG00000187555ENST00000381886-0.148927-GBM
ENSG00000264107ENST00000583377USP7ENSG00000187555ENST00000563043-0.131535-GBM
ENSG00000264107ENST00000583377HEATR5BENSG00000008869ENST00000425467-0.1759145-GBM
ENSG00000264107ENST00000583377BOD1L1ENSG00000038219ENST00000482713-0.12691-GBM
ENSG00000264107ENST00000583377INPP4AENSG00000040933ENST00000409851-0.1885351-GBM
ENSG00000264107ENST00000583377INPP4AENSG00000040933ENST00000409540-0.1681327-GBM
ENSG00000264107ENST00000583377TP53BP1ENSG00000067369ENST00000382044-0.15911-GBM
ENSG00000264107ENST00000583377TP53BP1ENSG00000067369ENST00000434561-0.172958-GBM
ENSG00000264107ENST00000583377TP53BP1ENSG00000067369ENST00000467474-0.1148169-GBM
ENSG00000264107ENST00000583377CYLDENSG00000083799ENST00000564326-0.103892-GBM
ENSG00000264107ENST00000583377CYLDENSG00000083799ENST00000566206-0.133293-GBM
ENSG00000264107ENST00000583377CYLDENSG00000083799ENST00000562884-0.2855239-GBM
ENSG00000264107ENST00000583377MAPK1ENSG00000100030ENST00000398822-0.1020134-GBM
ENSG00000264107ENST00000583377SUN2ENSG00000100242ENST00000405510-0.14881-GBM
ENSG00000264107ENST00000583377SUN2ENSG00000100242ENST00000405018-0.14881-GBM
ENSG00000264107ENST00000583377SUN2ENSG00000100242ENST00000406622-0.137122-GBM
ENSG00000264107ENST00000583377SUN2ENSG00000100242ENST00000455125-0.16271-GBM
ENSG00000264107ENST00000583377SUN2ENSG00000100242ENST00000430185-1.3560332-GBM
ENSG00000264107ENST00000583377ACO2ENSG00000100412ENST00000216254-0.23511-GBM
ENSG00000264107ENST00000583377ACO2ENSG00000100412ENST00000396512-0.23511-GBM
ENSG00000264107ENST00000583377PCNX1ENSG00000100731ENST00000554691-0.103823-GBM
ENSG00000264107ENST00000583377PCNX1ENSG00000100731ENST00000555780-0.1611135-GBM
ENSG00000264107ENST00000583377CCSER2ENSG00000107771ENST00000359979-0.1192181-GBM
ENSG00000264107ENST00000583377CCSER2ENSG00000107771ENST00000372088-0.18321-GBM
ENSG00000264107ENST00000583377CCSER2ENSG00000107771ENST00000224756-0.18321-GBM
ENSG00000264107ENST00000583377CCSER2ENSG00000107771ENST00000543283-0.18321-GBM
ENSG00000264107ENST00000583377GBF1ENSG00000107862ENST00000369983-0.12601-GBM
ENSG00000264107ENST00000583377CERT1ENSG00000113163ENST00000261415-0.2492416-GBM
ENSG00000264107ENST00000583377CERT1ENSG00000113163ENST00000508809-0.3337339-GBM
ENSG00000264107ENST00000583377STRNENSG00000115808ENST00000379213-0.1381366-GBM
ENSG00000264107ENST00000583377RAB3GAP1ENSG00000115839ENST00000539493-0.12541-GBM
ENSG00000264107ENST00000583377ZC3H13ENSG00000123200ENST00000282007-0.10691-GBM
ENSG00000264107ENST00000583377C16orf70ENSG00000125149ENST00000219139-0.10781-GBM
ENSG00000264107ENST00000583377C16orf70ENSG00000125149ENST00000569277-0.1534148-GBM
ENSG00000264107ENST00000583377UBR4ENSG00000127481ENST00000375254-0.16771-GBM
ENSG00000264107ENST00000583377UBR4ENSG00000127481ENST00000375225-0.16771-GBM
ENSG00000264107ENST00000583377UBR4ENSG00000127481ENST00000375224-0.16771-GBM
ENSG00000264107ENST00000583377UBR4ENSG00000127481ENST00000375218-0.114386-GBM
ENSG00000264107ENST00000583377HERC2ENSG00000128731ENST00000564734-0.11241-GBM

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000264107.1ENST00000583377.1124474100