 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | DNMT1,ILF3,GLI4,RBM39,CIRBP,MZF1,NRF1,AKAP8,SUGP2,MAFG,DMTF1,RBM27,DDX52,RBM28,TBP,ZBED4,DDX55,ZFP69,SNRPA,BARD1,SAFB2,THOC1,E2F2,LARP7,CHTOP,TFAP4,LSM5,PNO1,SCAF4,PA2G4,CENPT,PCBP2,MRM1,SUGP1,DDX54,SRSF4,RBMX,AGO2,RBM4B,U2AF2,CSTF3,RBM26,RNPS1,RBM14,ERAL1,ZBTB3,ADNP,NCBP1,PUS7L,SURF6,DHX34,SF3B6,TSN,CXXC1,E2F6,ZNF22,SRSF9,ZC3H8,TGIF2,SART3,NOL9,FOXM1,MEX3D,ZNF48,CENPA,WIZ,CELF1,PSPC1,KRR1,TIGD1,RBM45,RBM10,DDX51,E2F4,MBD3,SRSF2,DDX31,FIZ1,TFCP2,NSUN6,ZNF8,PCGF2,DDX11,SOX12,KDM2B,RBM6,HMGN3,NOP2,E2F1,GMEB2,XPO1,RBM5,BRCA1,NFYB,ZNF43,DOT1L,ZNF84,DDX42,TRA2A,RBM8A,NAIF1,SRSF7,HINFP,NR2C1,PCGF6,SFPQ,RALY,RBM33,NOL8,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RBM27,DOT1L,GMEB1,ZNF48,TBP,MZF1,MLXIP,AGO2,E2F2,E4F1,ZNF22,E2F6,XPO1,RBM5,CXXC1,MYB,DDX52,U2AF2,DKC1,RNPS1,TFCP2,TFAP4,RBMX,RBM10,PSPC1,FOXK1,DNMT1,ADNP,E2F4,CIRBP,RBM6,SRSF9,RBM39,CELF1,PCBP2,FOXK2,TRA2A,BPTF,CENPA | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CPEB4 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000263731 | ENST00000582866 | exon_skip_380242 | chr3:186784961-186785101 | -13.08 | -0.1147 | EIF4A2 | ENST00000323963 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_337750 | ENSG00000263731.1 | chr17 | 81879787 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337777 | ENSG00000263731.1 | chr17 | 81880199 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337779 | ENSG00000263731.1 | chr17 | 81880205 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337787 | ENSG00000263731.1 | chr17 | 81880276 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337789 | ENSG00000263731.1 | chr17 | 81880290 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337795 | ENSG00000263731.1 | chr17 | 81880335 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337796 | ENSG00000263731.1 | chr17 | 81880345 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337799 | ENSG00000263731.1 | chr17 | 81880371 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337800 | ENSG00000263731.1 | chr17 | 81880374 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337802 | ENSG00000263731.1 | chr17 | 81880381 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337806 | ENSG00000263731.1 | chr17 | 81880405 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337812 | ENSG00000263731.1 | chr17 | 81880732 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337821 | ENSG00000263731.1 | chr17 | 81880808 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337822 | ENSG00000263731.1 | chr17 | 81880815 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337823 | ENSG00000263731.1 | chr17 | 81880816 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337833 | ENSG00000263731.1 | chr17 | 81880905 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 | | LncEditing_337835 | ENSG00000263731.1 | chr17 | 81880936 | - | lincRNA | RP11-498C9.15 | ENST00000582866.1 | lincRNA | RP11-498C9.15-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000263731 | LncEditing_337779 | GBM | chr17_81880205_- | 2.630366e+00 | 1.567812e+00 | 1.339565e+00 | 5.386733e+00 | 7.174984e-08 | 1.687373e-07 | UP | | ENSG00000263731 | LncEditing_337750 | OV | chr17_81879787_- | 2.439641e+00 | 1.858480e+00 | 2.547473e+00 | 3.418269e+00 | 6.302068e-04 | 6.943980e-04 | UP | | ENSG00000263731 | LncEditing_337777 | OV | chr17_81880199_- | 2.890473e+00 | 1.714372e+00 | 1.326919e+00 | 7.964135e+00 | 1.663839e-15 | 4.833807e-15 | UP | | ENSG00000263731 | LncEditing_337779 | OV | chr17_81880205_- | 2.779073e+00 | 1.593300e+00 | 1.245972e+00 | 9.831118e+00 | 8.269554e-23 | 4.767307e-22 | UP | | ENSG00000263731 | LncEditing_337795 | OV | chr17_81880335_- | 3.044606e+00 | 1.810958e+00 | 1.334219e+00 | 5.605568e+00 | 2.075736e-08 | 3.063627e-08 | UP | | ENSG00000263731 | LncEditing_337800 | OV | chr17_81880374_- | 2.956230e+00 | 1.811254e+00 | 1.414889e+00 | 5.822783e+00 | 5.787580e-09 | 8.899130e-09 | UP | | ENSG00000263731 | LncEditing_337806 | OV | chr17_81880405_- | 2.867391e+00 | 1.672901e+00 | 1.286361e+00 | 8.229271e+00 | 1.883564e-16 | 5.931292e-16 | UP | | ENSG00000263731 | LncEditing_337822 | OV | chr17_81880815_- | 2.830632e+00 | 1.809080e+00 | 1.548304e+00 | 5.474732e+00 | 4.381744e-08 | 6.305186e-08 | UP | | ENSG00000263731 | LncEditing_337750 | STAD | chr17_81879787_- | 2.788211e+00 | 2.124241e+00 | 2.548470e+00 | 4.149288e+00 | 3.335108e-05 | 3.885984e-05 | UP | | ENSG00000263731 | LncEditing_337777 | STAD | chr17_81880199_- | 3.136520e+00 | 1.861302e+00 | 1.328281e+00 | 8.468192e+00 | 2.492320e-17 | 7.879876e-17 | UP | | ENSG00000263731 | LncEditing_337779 | STAD | chr17_81880205_- | 3.072542e+00 | 1.726073e+00 | 1.202010e+00 | 1.013874e+01 | 3.718490e-24 | 3.113964e-23 | UP | | ENSG00000263731 | LncEditing_337795 | STAD | chr17_81880335_- | 3.594786e+00 | 2.033667e+00 | 1.216808e+00 | 6.235652e+00 | 4.499000e-10 | 7.174352e-10 | UP | | ENSG00000263731 | LncEditing_337800 | STAD | chr17_81880374_- | 3.621590e+00 | 1.985153e+00 | 1.152907e+00 | 7.002348e+00 | 2.517073e-12 | 4.793150e-12 | UP | | ENSG00000263731 | LncEditing_337806 | STAD | chr17_81880405_- | 3.285871e+00 | 1.844693e+00 | 1.200631e+00 | 9.189603e+00 | 3.942945e-20 | 1.792475e-19 | UP | | ENSG00000263731 | LncEditing_337812 | STAD | chr17_81880732_- | 3.180992e+00 | 1.990176e+00 | 1.478020e+00 | 6.558415e+00 | 5.438270e-11 | 9.216097e-11 | UP | | ENSG00000263731 | LncEditing_337821 | STAD | chr17_81880808_- | 3.119567e+00 | 2.034126e+00 | 1.620912e+00 | 6.606351e+00 | 3.939077e-11 | 6.796094e-11 | UP | | ENSG00000263731 | LncEditing_337822 | STAD | chr17_81880815_- | 3.095880e+00 | 1.925563e+00 | 1.459706e+00 | 7.942398e+00 | 1.983086e-15 | 5.116720e-15 | UP | | ENSG00000263731 | LncEditing_337823 | STAD | chr17_81880816_- | 2.849866e+00 | 2.081790e+00 | 2.207165e+00 | 5.456632e+00 | 4.852512e-08 | 6.592787e-08 | UP | | ENSG00000263731 | LncEditing_337833 | STAD | chr17_81880905_- | 3.473867e+00 | 2.033056e+00 | 1.293841e+00 | 6.850168e+00 | 7.376337e-12 | 1.354220e-11 | UP | | ENSG00000263731 | LncEditing_337835 | STAD | chr17_81880936_- | 3.365416e+00 | 1.968048e+00 | 1.291958e+00 | 8.141429e+00 | 3.906409e-16 | 1.059465e-15 | UP | | ENSG00000263731 | LncEditing_337750 | ESCA | chr17_81879787_- | 2.875160e+00 | 2.317120e+00 | 3.212239e+00 | 2.004828e+00 | 4.498149e-02 | 4.517547e-02 | UP | | ENSG00000263731 | LncEditing_337777 | ESCA | chr17_81880199_- | 3.117872e+00 | 1.682684e+00 | 1.123851e+00 | 6.604895e+00 | 3.978002e-11 | 1.394296e-10 | UP | | ENSG00000263731 | LncEditing_337779 | ESCA | chr17_81880205_- | 2.994066e+00 | 1.459278e+00 | 9.644590e-01 | 7.193206e+00 | 6.328732e-13 | 3.211870e-12 | UP | | ENSG00000263731 | LncEditing_337787 | ESCA | chr17_81880276_- | 3.524525e+00 | 2.029208e+00 | 1.255473e+00 | 5.652047e+00 | 1.585480e-08 | 3.323166e-08 | UP | | ENSG00000263731 | LncEditing_337789 | ESCA | chr17_81880290_- | 3.497476e+00 | 2.312961e+00 | 1.676241e+00 | 3.485436e+00 | 4.913364e-04 | 5.766187e-04 | UP | | ENSG00000263731 | LncEditing_337795 | ESCA | chr17_81880335_- | 3.798788e+00 | 1.955236e+00 | 1.043627e+00 | 6.431124e+00 | 1.266635e-10 | 4.028629e-10 | UP | | ENSG00000263731 | LncEditing_337796 | ESCA | chr17_81880345_- | 3.853963e+00 | 2.124258e+00 | 1.163625e+00 | 5.747505e+00 | 9.056978e-09 | 1.973329e-08 | UP | | ENSG00000263731 | LncEditing_337799 | ESCA | chr17_81880371_- | 3.234801e+00 | 2.313817e+00 | 2.068671e+00 | 3.961344e+00 | 7.452900e-05 | 9.461708e-05 | UP | | ENSG00000263731 | LncEditing_337800 | ESCA | chr17_81880374_- | 3.615418e+00 | 2.034779e+00 | 1.205850e+00 | 6.095962e+00 | 1.087814e-09 | 2.875230e-09 | UP | | ENSG00000263731 | LncEditing_337802 | ESCA | chr17_81880381_- | 3.120440e+00 | 2.332740e+00 | 2.382517e+00 | 3.193549e+00 | 1.405356e-03 | 1.578577e-03 | UP | | ENSG00000263731 | LncEditing_337806 | ESCA | chr17_81880405_- | 3.192304e+00 | 1.875649e+00 | 1.303428e+00 | 5.703861e+00 | 1.171233e-08 | 2.482208e-08 | UP | | ENSG00000263731 | LncEditing_337812 | ESCA | chr17_81880732_- | 3.356960e+00 | 2.025369e+00 | 1.371798e+00 | 5.270467e+00 | 1.360774e-07 | 2.478004e-07 | UP | | ENSG00000263731 | LncEditing_337821 | ESCA | chr17_81880808_- | 3.442587e+00 | 1.972786e+00 | 1.244929e+00 | 5.417211e+00 | 6.053588e-08 | 1.161934e-07 | UP | | ENSG00000263731 | LncEditing_337822 | ESCA | chr17_81880815_- | 3.308664e+00 | 1.787114e+00 | 1.125344e+00 | 6.112971e+00 | 9.779334e-10 | 2.601204e-09 | UP | | ENSG00000263731 | LncEditing_337823 | ESCA | chr17_81880816_- | 3.319432e+00 | 1.982385e+00 | 1.344629e+00 | 6.007986e+00 | 1.878422e-09 | 4.698297e-09 | UP | | ENSG00000263731 | LncEditing_337833 | ESCA | chr17_81880905_- | 3.553177e+00 | 2.104841e+00 | 1.323805e+00 | 5.312433e+00 | 1.081713e-07 | 1.997596e-07 | UP | | ENSG00000263731 | LncEditing_337835 | ESCA | chr17_81880936_- | 3.840282e+00 | 1.874154e+00 | 9.662094e-01 | 7.169023e+00 | 7.553464e-13 | 3.725191e-12 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000263731 | LncEditing_337777 | -3.702056e-01 | 1.264978e-03 | 2.461885e-03 | | ENSG00000263731 | LncEditing_337806 | -3.149530e-01 | 3.326502e-03 | 5.230804e-03 | | ENSG00000263731 | LncEditing_337822 | -5.248815e-01 | 1.080282e-04 | 4.423043e-04 | | ENSG00000263731 | LncEditing_337750 | -4.242583e-01 | 1.005537e-03 | 2.075758e-03 | | ENSG00000263731 | LncEditing_337812 | -3.847913e-01 | 7.115570e-04 | 1.579746e-03 | | ENSG00000263731 | LncEditing_337822 | -3.141095e-01 | 1.829507e-03 | 3.135029e-03 | | ENSG00000263731 | LncEditing_337750 | -5.006233e-01 | 1.601312e-03 | 7.211090e-03 | | ENSG00000263731 | LncEditing_337777 | -4.189480e-01 | 5.953824e-05 | 2.780145e-03 | | ENSG00000263731 | LncEditing_337779 | -3.328832e-01 | 5.549108e-04 | 4.803891e-03 | | ENSG00000263731 | LncEditing_337787 | -5.345018e-01 | 1.554967e-04 | 2.900611e-03 | | ENSG00000263731 | LncEditing_337795 | -4.219883e-01 | 4.823482e-03 | 1.313320e-02 | | ENSG00000263731 | LncEditing_337799 | -4.578343e-01 | 2.803389e-02 | 3.587450e-02 | | ENSG00000263731 | LncEditing_337800 | -4.252656e-01 | 4.992634e-03 | 1.337805e-02 | | ENSG00000263731 | LncEditing_337802 | -5.132186e-01 | 1.226177e-02 | 2.258010e-02 | | ENSG00000263731 | LncEditing_337806 | -3.417526e-01 | 3.784919e-03 | 1.161826e-02 | | ENSG00000263731 | LncEditing_337812 | -4.150320e-01 | 2.459198e-03 | 9.435241e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000263731.1 | ENST00000582866.1 | 170 | 55 | 564 |
|
