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lncRNA: ENSG00000262766

Summary for RP11-196G11.4

Gene summary

Gene information	Ensembl ID	ENSG00000262766
	Gene symbol	RP11-196G11.4
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_intronic
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-196G11.4

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000262766	8.174121e+01	1.518683e+00	1.494979e-01	1.015856e+01	3.040000e-24	7.190000e-23	UP	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000262766	4.820790e-01	1.723120e-06	KICH	4.614068e-06

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lncRNA-Protein interaction for RP11-196G11.4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP11-196G11.4

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RPAP2,SPAG9,PMM2,VAMP1,HELQ,CPLANE1,PUM1,MYCBP2,ERI2,OXNAD1,MFSD8,DNAJC27,BRD1,MZF1,DHX38,MAPK8IP3,DCP1A,SUGP2,VAMP4,N4BP2L2,DMTF1,SLF2,ANKRD44,ZDHHC23,TMEM184C,FAM193A,UNKL,PIGG,UBE4A,USP36,VPS39,IRAK4,ZFP14,CENATAC,WDR5B,ST7L,KAT6A,KLHL28,KCTD13,TUBGCP6,CCDC14,RSF1,SMARCC2,NUP58,AFF4,MYO9A,CLK4,ZBED5,RPAP1,SETD2,RNF40,TTC14,KNTC1,SIN3A,CREB1,GPRIN3,SLC2A11,SPG7,KDM5A,PPIP5K2,CAPN7,STRN3,SIAH1,PPIP5K1,CLCN6,OGT,SCML1,ARIH1,C20orf194,GZF1,NCBP1,MYEF2,PPTC7,FAM219B,ARID4B,ASH1L,CLOCK,PTAR1,TUT4,RBM15,METTL17,FAN1,RIC8B,UBE3A,MGRN1,CPSF7,BBIP1,THOC2,ACAD10,ATXN7,MRRF,RABL2A,RPAIN,OFD1,VPS36,PEAK1,FBXO38,RFX7,TMEM39A,HCFC2,PURA,XPNPEP3,NCOA6,ANO8,RSRC2,TTC21B,NPAT,NAPB,AP1G1,ANKRD11,ARID1A,NAA25,SETD5,ZFP62,SOCS4,MDN1,CHIC1,KLHL11,CHD9,BRAF,RALGAPA2,YTHDC1,COQ7,AGO3,SECISBP2L,ORC2,GUF1,SBNO1,PHC3,PRRC1,PASK,LRRC37B,ZZEF1,DHX35,INTS2,TAOK3,NXF1,RNF111,TNKS,ANKRD28,NR2C2,PAN2,SMARCAD1,GIGYF1,KHNYN,RMI1,FAM193B,COG7,CCDC186,NRDE2,ATG2B,ZFC3H1,MBTD1,ATXN2L,DNASE1,SEPSECS,ARHGEF7,AP4E1,DDX42,CCNT1,HIPK1,CEP192,TTC3,ARHGEF11,EIF4A1,PIK3C2A,RINT1,MRPS25,VPS13A,PALB2,GOLGA2,DNAJC24,PGGT1B,ATF7IP,ZFP3,MARCHF6,LTN1,RNF214,IQCC,PIK3R4,ATM,MED14,TTC17,CDK13,LENG8,SH2B1,KLF7,PHKA2,LCORL,TRAF6,CSNK1G1,CEP57,UBE2G2,HOOK3,FGD4,ARIH2,SPICE1,PPWD1,RELCH,MLLT6,RBM27,ATG12,ZNF70,INO80D,NHLRC3,ICE2,SMCR8,RORA,CNOT6L,DDX55,PHF7,KRIT1,AP1G2,FAM111A,COG5,THOC1,ANKMY1,WDR59,UBA6,UBR1,DENND6A,RALGPS2,UGGT2,ZMYM5,C2CD3,TAMM41,PDP2,TMED8,AP5M1,PDCD6IP,SNRNP48,RC3H1,CBLB,XPO4,SETX,ZNF44,AP1AR,SLC12A6,SMG1,DENND11,PKD1,RIMKLB,XIAP,BCLAF3,DNAJB14,PUS7L,BBS2,IFT80,ZCCHC14,CEP83,NEK9,GGNBP2,EP400,LIN54,UBN2,BMP2K,ERCC6L2,KIAA0586,LRIG2,ABHD18,SESTD1,NEMF,SMCHD1,SLX4,CREBRF,MECP2,SMYD4,NBPF11,RPRD1B,CYP4V2,ACIN1,ZNF41,ZC3H8,LATS1,ARHGAP17,DGKE,MAU2,PAXBP1,SLC38A9,APPL2,GANC,COA1,FNBP4,KMT2D,SYNRG,BOD1L1,RSRP1,TMF1,CHD2,TSTD2,RNF31,GOLGA4,FLCN,USP40,MED23,ATG14,GOLGB1,FOXP1,PWWP2A,NBPF15,METTL14,OTUD4,NSUN2,ZNF720,CBLL1,HEMK1,LINS1,HERC1,ANKRD26,GSAP,SCAF11,GGA2,PUS10,TMEM167A,FBXL8,MRE11,GK5,RBM6,TRMT13,RAD50,ZNF862,TTBK2,TP53BP1,ZFHX3,CCDC82,ARID4A,SBF2,NT5C2,LPP,RNF115,LRBA,NCR3LG1,CCDC142,ELP1,PAXIP1,TTC37,RRN3,SYNE2,CBX5,EPM2AIP1,UCKL1,TGOLN2,TMEM144,CHD1,PSME3IP1,MAML1,WDR27,HECTD4,EME2,EXOC7,ANKFY1,KHDC4,TPR,EP400P1,MIDEAS,HPS4,PNISR,SFPQ,AMT,CEPT1,USP45,UBE3B,CARD8,DMXL2,LMLN,ATAD2B,ZNF10,EVI5,NCOA2,CLCN7,FAM126B,PREPL,PLCG1,PRKAB2,RALGAPA1,CEP120,KLF12,B3GALNT2,WDR11,ROCK1,KDM3B,MYSM1,FAM214A,N4BP2,MED13L,AKAP8,ARID2,SMG6,SEC24B,VPS13B,RNF44,TAF4,PLEKHH1,SPIN3,TBRG1,SLX4IP,PPP1R12A,KLHDC1,GATAD1,PBRM1,TET3,XPC,PDPK1,PRR14L,FAM160A1,PPM1A,CLK3,RNPC3,RPS6KB1,TENT4A,INCA1,UBXN7,LRCH3,MNT,CNOT4,SON,BTBD19,N6AMT1,KIAA2026,KANSL3,KMT2C,FBXO22,SCAF4,DENND4A,MPHOSPH9,CCNT2,HECTD1,MAGI1,EDC4,LPIN1,RNF123,NFRKB,ZFP91,ZNF91,CHD6,NBEAL1,AGO2,BRWD1,CNOT1,DDI2,RBM26,TRAPPC11,OPHN1,NAPEPLD,PCSK7,ZBTB3,TUBGCP5,RBM25,FBXW7,RO60,SLC7A6OS,TBCK,MLH3,SP4,SETD6,KANSL1L,POLI,UBR5,PRPF39,ETNK1,WDFY3,ATP8A1,NDOR1,SMC5,SRRM2,DCAF17,HEATR5B,LCOR,PANK3,DDHD1,PABIR2,ZNF717,MAP4K5,CMTR2,FBXL20,CEP44,CENPC,HSF4,RBM41,PROSER3,HERC2,OTUD6B,ANKS3,YJEFN3,TUBGCP4,CCNL1,SRPK2,USP28,USP19,ANKRA2,SGSM2,C2orf49,POLK,PLEKHA3,VMAC,NCOR1,CELF1,TMEM161B,EPG5,KRR1,RBM45,HSPBAP1,NFXL1,WRN,SPATA5,R3HDM2,PMS1,FAM160A2,ADCY6,WDR36,HOOK2,RANBP10,PPP4R3A,ZNF83,MOSMO,KANSL1,NSUN6,ZNF8,ZMYM3,DPH1,UHRF1BP1L,ERCC3,RUSF1,KDM2B,SZT2,IDH3A,FAM13B,DDX5,USP48,GRIPAP1,STX17,PARP8,HELZ,ARFGEF1,ELF2,CRAMP1,LUC7L,SPOPL,ZNF43,WDR6,PNN,MICAL3,CDC14B,BRD8,GAPVD1,SACM1L,UBE2V1,ARHGAP5,SNX13,PMS2,USP16,MAPKAPK5,KMT2A,REV1,PCBD2,NR2C1,APBB3,FAM135A,DYNC1LI2,SOS1,RUFY2,JMY,RBM33,HCFC1,AVL9,ADAL,ZDHHC21,NOL8,LRCH4,AGAP6,RBM19,GGA3,GABPB2,ATXN7L1,TRIM66,MAPKBP1,RBM39,GPATCH8,SLC25A27,MSL2,CLEC16A,NRF1,WASHC4,ZXDC,ESF1,GAK,KAT8,NSRP1,FNDC3A,PDS5A,PIGL,ZC3H7A,GBA2,CSAD,PLA2G12A,KIAA0895L,BAZ2A,ATRX,MAP3K2,RBM28,C2CD5,ABCA5,PHYKPL,NHLRC2,ZBTB5,RUFY3,ZFYVE26,OGA,CEP350,PHKG2,MED28,PTCD2,KMT2E,CLASP2,DCAF16,GOLGA1,NUMB,MORC3,ITPRIPL2,MINDY2,RICTOR,PEX1,CHORDC1,RAB11FIP2,DPP8,MTG1,KAT6B,APAF1,SOS2,FBXW8,TOGARAM1,FAM76B,INPP4B,USP7,YAF2,BRWD3,AKAP10,RBM4B,DTWD1,TSC2,EXOG,PCNT,N4BP1,TAF1C,ADNP,MAP3K12,MBD1,IKZF4,MYO19,TCEANC2,FUBP1,DCAF5,NF1,THAP9,TENT4B,TRIM33,RAB22A,WDR20,SCAPER,LRP6,MRNIP,THAP6,KIDINS220,SS18L1,ELMOD3,DCAF1,DHX15,DDX17,FBXW2,SENP7,AQR,MTRF1,RSBN1L,FMR1,RAD52,DYRK1A,ASXL2,CTDSPL2,MARF1,GOLGA3,GNPDA2,INO80,CEP290,SDR39U1,TRIP11,TRPM7,NEK1,PXK,SMC6,SLC24A1,GPALPP1,MKLN1,C12orf76,ABCC5,ELK4,KLC1,NSD2,TRIM52,NCBP3,DEPDC5,USF3,SLC22A5,FBXO11,CCDC93,LMBR1,TTC32,MTX3,ZMAT1,GOLGA8B,YOD1,UBAP2,MCM3AP,HP1BP3,ALPK1,ACP6,STRADA,VPS13C,ZFX,CBR4,DIDO1,GOLGA8A,LMBRD2,RABGAP1,FKTN,SETD4,CREBBP,PIKFYVE,AARSD1,DUSP28,PUM2,TYW5,RBM5,USP3,CPEB3,DHX36,NKTR,FARP2,C19orf71,ZNF17,SRCAP,DOT1L,TTLL3,TUBE1,RNF169,ZNF84,CCP110,PARP6,ARHGEF12,BICRAL,WDR26,LONP2,TRA2B,PRPF40B,FRYL,PCMTD1,PIAS2,KATNIP,JMJD1C,ASXL1,ARHGAP21,FBRS,TSC1,DENND4B,NSUN3,SPG11,TEP1,MAN2C1,TAB3,CLIP1,USPL1,TBC1D5,WHAMM,PRPF4B,TET2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-196G11.4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MZT2B,BAD,SNRPC,KIAA2013,NDUFB7,COX6B1,CAPNS1,PSMB6,PSMC3,RHOC,UBA52,GSTO1,FKBP8,RNF181,LAMTOR2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-196G11.4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000262766	ENSG00000010318	PHF7	ACC,GBM,KICH,KIRC,KIRP,LGG,LUSC	KICH
ENSG00000262766	ENSG00000018189	RUFY3	ACC,BRCA,COAD,KICH,KIRC,KIRP,LUAD,OV,STAD	KICH
ENSG00000262766	ENSG00000033178	UBA6	ACC,COAD,GBM,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000038532	CLEC16A	ACC,BRCA,ESCA,GBM,KICH,KIRC,LGG,LUAD	KICH
ENSG00000262766	ENSG00000047634	SCML1	ACC,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000054690	PLEKHH1	ACC,COAD,ESCA,KICH,KIRC,KIRP,OV	KICH
ENSG00000262766	ENSG00000071189	SNX13	ACC,BRCA,COAD,ESCA,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000077454	LRCH4	ACC,ESCA,GBM,KICH,KIRC,KIRP,LGG,OV	KICH
ENSG00000262766	ENSG00000092098	RNF31	ACC,GBM,KICH,KIRC,KIRP,LGG,OV	KICH
ENSG00000262766	ENSG00000100099	HPS4	ACC,GBM,KICH,KIRC,LGG,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000100614	PPM1A	ACC,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000102910	LONP2	ACC,COAD,ESCA,KICH,KIRC,LGG,LUAD	KICH
ENSG00000262766	ENSG00000103249	CLCN7	ACC,GBM,KICH,LUSC,OV	KICH
ENSG00000262766	ENSG00000103365	GGA2	ACC,GBM,KICH,KIRC,OV	KICH
ENSG00000262766	ENSG00000103932	RPAP1	ACC,GBM,KICH,KIRP,LGG	KICH
ENSG00000262766	ENSG00000123739	PLA2G12A	ACC,ESCA,KICH,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000128923	MINDY2	ACC,COAD,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000130779	CLIP1	ACC,COAD,KICH,KIRC,KIRP,LAML	KICH
ENSG00000262766	ENSG00000138593	SECISBP2L	ACC,COAD,KICH,KIRC,KIRP	KICH
ENSG00000262766	ENSG00000139132	FGD4	ACC,COAD,ESCA,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000139163	ETNK1	ACC,COAD,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000140948	ZCCHC14	ACC,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD	KICH
ENSG00000262766	ENSG00000146083	RNF44	ACC,GBM,KICH,KIRC,KIRP,LGG,OV	KICH
ENSG00000262766	ENSG00000154814	OXNAD1	ACC,BRCA,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000157259	GATAD1	ACC,BRCA,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000163257	DCAF16	ACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000164124	TMEM144	ACC,ESCA,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000164180	TMEM161B	ACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000164327	RICTOR	ACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD	KICH
ENSG00000262766	ENSG00000166411	IDH3A	ACC,KICH,KIRC,KIRP,OV	KICH
ENSG00000262766	ENSG00000167548	KMT2D	ACC,BRCA,COAD,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000168488	ATXN2L	ACC,GBM,KICH,KIRC,KIRP,LGG,LUSC,OV	KICH
ENSG00000262766	ENSG00000168781	PPIP5K1	ACC,ESCA,KICH,KIRC,KIRP	KICH
ENSG00000262766	ENSG00000172840	PDP2	ACC,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000178188	SH2B1	ACC,ESCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV,STAD	KICH
ENSG00000262766	ENSG00000178950	GAK	ACC,GBM,KICH,KIRC,OV	KICH
ENSG00000262766	ENSG00000184307	ZDHHC23	ACC,COAD,KICH,KIRC,KIRP,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000187555	USP7	ACC,GBM,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000188559	RALGAPA2	ACC,ESCA,GBM,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000188827	SLX4	ACC,BRCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,OV	KICH
ENSG00000262766	ENSG00000198001	IRAK4	ACC,ESCA,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000205730	ITPRIPL2	ACC,COAD,KICH,KIRC,KIRP,LUAD,OV	KICH
ENSG00000262766	ENSG00000211456	SACM1L	ACC,ESCA,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000015153	YAF2	BRCA,COAD,KICH,KIRC,LAML,LUAD	KICH
ENSG00000262766	ENSG00000100150	DEPDC5	BRCA,COAD,GBM,KICH,KIRC,LUAD,LUSC,OV,STAD	KICH
ENSG00000262766	ENSG00000109452	INPP4B	BRCA,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000138756	BMP2K	BRCA,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000151276	MAGI1	BRCA,COAD,GBM,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000165288	BRWD3	BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC	KICH
ENSG00000262766	ENSG00000168297	PXK	BRCA,COAD,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000186532	SMYD4	BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC	KICH
ENSG00000262766	ENSG00000082269	FAM135A	COAD,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000107863	ARHGAP21	COAD,GBM,KICH,KIRC,KIRP	KICH
ENSG00000262766	ENSG00000124406	ATP8A1	COAD,ESCA,KICH,KIRC,KIRP,LUAD	KICH
ENSG00000262766	ENSG00000164142	FAM160A1	COAD,KICH,KIRC,LUAD,OV	KICH
ENSG00000262766	ENSG00000165392	WRN	COAD,GBM,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000184445	KNTC1	COAD,GBM,KICH,KIRC,KIRP,LUAD,LUSC	KICH
ENSG00000262766	ENSG00000185477	GPRIN3	COAD,ESCA,KICH,KIRC,LUAD	KICH
ENSG00000262766	ENSG00000188211	NCR3LG1	COAD,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000048028	USP28	GBM,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000090615	GOLGA3	GBM,KICH,KIRC,LUAD,OV	KICH
ENSG00000262766	ENSG00000141084	RANBP10	GBM,KICH,KIRC,KIRP,LGG,LUSC,OV	KICH
ENSG00000262766	ENSG00000166532	RIMKLB	GBM,KICH,KIRC,KIRP,LGG	KICH
ENSG00000262766	ENSG00000171456	ASXL1	GBM,KICH,KIRC,KIRP,LGG,LUAD	KICH
ENSG00000262766	ENSG00000278259	MYO19	GBM,KICH,KIRC,KIRP,LGG,LUSC,OV	KICH
ENSG00000262766	ENSG00000131368	MRPS25	KICH,KIRC,KIRP,LUAD,LUSC,OV	KICH

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000262766	ENST00000576336	RHOC	ENSG00000155366	ENST00000369636	-0.1107	266	-	KICH
ENSG00000262766	ENST00000576336	RHOC	ENSG00000155366	ENST00000369632	-0.7033	316	-	KICH
ENSG00000262766	ENST00000576336	RHOC	ENSG00000155366	ENST00000528831	-0.1135	32	-	KICH

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000262766.1	ENST00000576336.1	193	1011	430

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential