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lncRNA: ENSG00000262692

Summary for CTD-3195I5.3

Gene summary

Gene information	Ensembl ID	ENSG00000262692
	Gene symbol	CTD-3195I5.3
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-3195I5.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000262692	1.649444e+01	1.885909e+00	4.669361e-01	4.038902e+00	5.370000e-05	2.489240e-04	UP	CHOL
ENSG00000262692	2.023790e+01	2.467294e+00	1.825172e-01	1.351815e+01	1.220000e-41	2.090000e-40	UP	KIRC
ENSG00000262692	1.898008e+01	1.276214e+00	2.499737e-01	5.105393e+00	3.300000e-07	3.300000e-06	UP	BLCA
ENSG00000262692	2.018402e+01	2.124990e+00	2.312712e-01	9.188303e+00	3.990000e-20	9.760000e-19	UP	KIRP

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000262692	5.956291e-01	1.586336e-05	CHOL	9.075567e-05

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lncRNA-Protein interaction for CTD-3195I5.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000146247	PHIP	62.43	93.1876	Q8WWQ0	Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000185658	BRWD1	52.6	93.1677	Q9NSI6	Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000166987	MBD6	37.74	90.6587	Q96DN6	TF,Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000120616	EPC1	31.95	91.8472	Q9H2F5	Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000170004	CHD3	54.32	90.2689	Q12873	Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000183495	EP400	36.67	93.1407	Q96L91	Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000120071	KANSL1	26.1	90.2591	Q7Z3B3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000167967	E4F1	56.54	90.3271	Q66K89	TF	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000181827	RFX7	50.76	90.8576	Q2KHR2	TF	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000166987	MBD6	37.74	91.1554	Q96DN6	TF,Epi	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000272333	KMT2B	31.5	90.5298	Q9UMN6	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000198000	NOL8	49.86	90.9913	Q76FK4	RBP	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000162775	RBM15	41.77	91.0046	Q96T37	RBP	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000129351	ILF3	25.33	91.5733	Q12906	RBP	ENCODE
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000133226	SRRM1	20.72	91.9022	Q8IYB3	RBP	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000167978	SRRM2	16.08	96.4971	Q9UQ35	RBP	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000111605	CPSF6	12.29	92.7764	Q16630	RBP	NA
ENSG00000262692	ENST00000571741	CTD-3195I5.3	ENSG00000149532	CPSF7	5.23	91.2693	Q8N684	RBP	NA

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lncRNA-DNA interaction for CTD-3195I5.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-3195I5.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PCYOX1,ILRUN,RNH1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000262692	ENST00000571741	exon_skip_370518	chr22:50247691-50247776	-12.28	-0.2117	HDAC10	ENST00000216271	Frame-shift
ENSG00000262692	ENST00000571741	exon_skip_382458	chr3:38131595-38131638	-5.67	-0.1718	ACAA1	ENST00000333167	Frame-shift
ENSG00000262692	ENST00000571741	exon_skip_470226	chr7:103307595-103307708	-17.79	-0.2093	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-3195I5.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000262692	ENST00000571741	PCYOX1	ENSG00000116005	ENST00000433351	-0.1035	1	-	CHOL,KIRP
ENSG00000262692	ENST00000571741	PCYOX1	ENSG00000116005	ENST00000264441	-0.1042	1	-	CHOL,KIRP

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000262692.1	ENST00000571741.1	109	235	564

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential